@COMMENT
IDNUMBER = MTX
SOURCE = PDB_LIGAND
SUPPLIER = PDB_LIGAND
LIGANDBOX_ID = PDB_LIGAND-00009065-01
MOLECULAR_FORMULA = C20H22N8O5
MOLECULAR_WEIGHT = 454.447
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 9
NUM_OF_CHIRAL_ATOMS = 1
TPSA = 210.5400
HOMO = -2.0165
LUMO = 3.2597
LOGP = 0.200
LOGS = -3.910
@MOLECULE
PDB_LIGAND-00009065-01
53 55 0 0 0
SMALL
USER_CHARGES
@ATOM
1 N1 -0.1392 -4.4357 -1.5250 N.ar 1 LGD -0.8204
2 C1 1.1958 -4.5127 -1.6720 C.ar 1 LGD 0.9146
3 N2 1.6698 -5.0037 -2.8620 N.pl3 1 LGD -0.9185
4 N3 2.1048 -4.1517 -0.7490 N.ar 1 LGD -0.8598
5 C2 1.6368 -3.6727 0.4170 C.ar 1 LGD 0.7070
6 N4 2.5598 -3.2987 1.3680 N.pl3 1 LGD -0.8485
7 C3 0.2488 -3.5507 0.6690 C.ar 1 LGD 0.0355
8 N5 -0.2082 -3.0607 1.8470 N.ar 1 LGD -0.5468
9 C4 -1.5382 -2.9637 2.0120 C.ar 1 LGD 0.1730
10 C5 -2.4242 -3.3657 1.0030 C.ar 1 LGD 0.3343
11 N6 -1.9832 -3.8567 -0.1680 N.ar 1 LGD -0.6687
12 C6 -0.6482 -3.9587 -0.3680 C.ar 1 LGD 0.6240
13 C7 -2.0422 -2.3517 3.3150 C.3 1 LGD 0.1472
14 N7 -2.7472 -1.0707 3.0830 N.pl3 1 LGD -0.6251
15 C8 -4.1042 -0.9887 3.6520 C.3 1 LGD 0.1618
16 C9 -1.3382 1.6233 0.1240 C.ar 1 LGD -0.1396
17 C10 -0.4572 1.0733 1.0770 C.ar 1 LGD -0.0848
18 C11 -0.9322 0.1963 2.0650 C.ar 1 LGD -0.1570
19 C12 -2.2942 -0.1567 2.1220 C.ar 1 LGD 0.1019
20 C13 -3.1762 0.4003 1.1750 C.ar 1 LGD -0.1570
21 C14 -2.7042 1.2803 0.1890 C.ar 1 LGD -0.0848
22 C15 -0.8412 2.5603 -0.9490 C.2 1 LGD 0.6522
23 O1 -1.6152 3.1373 -1.6950 O.2 1 LGD -0.6245
24 N8 0.5258 2.7713 -1.0850 N.am 1 LGD -0.4939
25 C16 1.1008 3.6643 -2.1020 C.3 1 LGD -0.0215
26 C17 1.0438 3.0043 -3.4930 C.2 1 LGD 0.8864
27 O2 0.5168 3.6433 -4.3870 O.co2 1 LGD -0.8632
28 O3 1.5078 1.8823 -3.6070 O.co2 1 LGD -0.8632
29 C18 2.5508 4.0263 -1.6850 C.3 1 LGD -0.0570
30 C19 3.1928 5.0993 -2.5990 C.3 1 LGD -0.1817
31 C20 4.5828 5.5163 -2.0990 C.2 1 LGD 0.9044
32 O4 5.5448 5.1523 -2.7520 O.co2 1 LGD -0.8714
33 O5 4.6308 6.1983 -1.0900 O.co2 1 LGD -0.8714
34 H1 1.0168 -5.4637 -3.4790 H 1 LGD 0.4049
35 H2 2.6458 -5.2577 -2.9140 H 1 LGD 0.4049
36 H3 3.5198 -3.5827 1.2340 H 1 LGD 0.5046
37 H4 2.2318 -3.1307 2.3080 H 1 LGD 0.5046
38 H5 -3.5032 -3.2797 1.1230 H 1 LGD 0.0085
39 H6 -2.7152 -3.0727 3.7950 H 1 LGD 0.0600
40 H7 -1.2002 -2.1837 3.9990 H 1 LGD 0.0600
41 H8 -4.8142 -1.5437 3.0260 H 1 LGD 0.0293
42 H9 -4.1192 -1.4107 4.6650 H 1 LGD 0.0293
43 H10 -4.4272 0.0573 3.7170 H 1 LGD 0.0293
44 H11 0.6008 1.3193 1.0630 H 1 LGD 0.1483
45 H12 -0.2322 -0.2127 2.7880 H 1 LGD 0.1254
46 H13 -4.2302 0.1393 1.1840 H 1 LGD 0.1254
47 H14 -3.4062 1.6863 -0.5340 H 1 LGD 0.1483
48 H15 1.1548 2.2823 -0.4650 H 1 LGD 0.2969
49 H16 0.5108 4.5893 -2.1380 H 1 LGD 0.0782
50 H17 2.5388 4.4033 -0.6540 H 1 LGD 0.0519
51 H18 3.1758 3.1243 -1.6850 H 1 LGD 0.0519
52 H19 3.2778 4.7183 -3.6250 H 1 LGD 0.0274
53 H20 2.5528 5.9903 -2.6380 H 1 LGD 0.0274
@BOND
1 1 2 ar
2 1 12 ar
3 2 3 1
4 2 4 ar
5 4 5 ar
6 5 6 1
7 5 7 ar
8 7 8 1
9 7 12 ar
10 8 9 2
11 9 10 1
12 9 13 1
13 10 11 2
14 11 12 1
15 13 14 1
16 14 15 1
17 14 19 1
18 16 17 ar
19 16 21 ar
20 16 22 1
21 17 18 ar
22 18 19 ar
23 19 20 ar
24 20 21 ar
25 22 23 2
26 22 24 am
27 24 25 1
28 25 26 1
29 25 29 1
30 26 27 2
31 26 28 1
32 29 30 1
33 30 31 1
34 31 32 2
35 31 33 1
36 3 34 1
37 3 35 1
38 6 36 1
39 6 37 1
40 10 38 1
41 13 39 1
42 13 40 1
43 15 41 1
44 15 42 1
45 15 43 1
46 17 44 1
47 18 45 1
48 20 46 1
49 21 47 1
50 24 48 1
51 25 49 1
52 29 50 1
53 29 51 1
54 30 52 1
55 30 53 1