@COMMENT
IDNUMBER = MTX
SOURCE = PDB_LIGAND
SUPPLIER = PDB_LIGAND
LIGANDBOX_ID = PDB_LIGAND-00009065-02
MOLECULAR_FORMULA = C20H22N8O5
MOLECULAR_WEIGHT = 454.447
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 9
NUM_OF_CHIRAL_ATOMS = 1
TPSA = 210.5400
HOMO = -2.0165
LUMO = 3.2597
LOGP = 0.200
LOGS = -3.910
@MOLECULE
PDB_LIGAND-00009065-02
53 55 0 0 0
SMALL
USER_CHARGES
@ATOM
1 N1 2.4067 3.3823 -0.6028 N.ar 1 LGD -0.8259
2 C1 2.8776 3.0192 -1.8029 C.ar 1 LGD 0.9076
3 N2 4.2249 3.0771 -1.9815 N.pl3 1 LGD -0.9155
4 N3 2.1443 2.6152 -2.8459 N.ar 1 LGD -0.8684
5 C2 0.8202 2.5570 -2.6590 C.ar 1 LGD 0.6999
6 N4 0.0652 2.1381 -3.7213 N.pl3 1 LGD -0.8487
7 C3 0.2104 2.9128 -1.4353 C.ar 1 LGD 0.0383
8 N5 -1.1354 2.8478 -1.2741 N.ar 1 LGD -0.5408
9 C4 -1.6301 3.1887 -0.0697 C.ar 1 LGD 0.1755
10 C5 -0.7868 3.6092 0.9693 C.ar 1 LGD 0.3328
11 N6 0.5469 3.6869 0.8121 N.ar 1 LGD -0.6729
12 C6 1.0774 3.3383 -0.3817 C.ar 1 LGD 0.6214
13 C7 -3.1352 3.0549 0.1344 C.3 1 LGD 0.1506
14 N7 -3.4643 2.0243 1.1456 N.pl3 1 LGD -0.6269
15 C8 -4.3448 2.4731 2.2391 C.3 1 LGD 0.1670
16 C9 -1.2398 -1.5792 1.3491 C.ar 1 LGD -0.1110
17 C10 -1.7298 -1.1035 0.1155 C.ar 1 LGD -0.0757
18 C11 -2.4774 0.0825 0.0562 C.ar 1 LGD -0.1646
19 C12 -2.7473 0.8238 1.2221 C.ar 1 LGD 0.1019
20 C13 -2.2596 0.3471 2.4545 C.ar 1 LGD -0.1646
21 C14 -1.5155 -0.8417 2.5172 C.ar 1 LGD -0.0757
22 C15 -0.4292 -2.8483 1.4296 C.2 1 LGD 0.6567
23 O1 -0.1606 -3.3642 2.5023 O.2 1 LGD -0.6947
24 N8 0.0155 -3.4395 0.2557 N.am 1 LGD -0.4869
25 C16 0.8806 -4.6332 0.2192 C.3 1 LGD -0.0296
26 C17 0.8094 -5.3225 -1.1607 C.2 1 LGD 0.9139
27 O2 0.4229 -4.6621 -2.1121 O.co2 1 LGD -0.8494
28 O3 1.1163 -6.5014 -1.2022 O.co2 1 LGD -0.8494
29 C18 2.3427 -4.2660 0.6075 C.3 1 LGD -0.0609
30 C19 2.9892 -3.1894 -0.3044 C.3 1 LGD -0.1751
31 C20 4.3958 -2.8153 0.1764 C.2 1 LGD 0.9051
32 O4 5.3398 -3.2739 -0.4433 O.co2 1 LGD -0.8818
33 O5 4.4755 -2.0669 1.1352 O.co2 1 LGD -0.8818
34 H1 4.7536 3.5875 -1.2918 H 1 LGD 0.3979
35 H2 4.5619 3.0381 -2.9302 H 1 LGD 0.3979
36 H3 0.5169 2.1268 -4.6223 H 1 LGD 0.5102
37 H4 -0.9283 2.3060 -3.6695 H 1 LGD 0.5102
38 H5 -1.1807 3.8794 1.9481 H 1 LGD 0.0067
39 H6 -3.5267 4.0311 0.4484 H 1 LGD 0.0571
40 H7 -3.6195 2.7991 -0.8167 H 1 LGD 0.0571
41 H8 -3.7760 3.0677 2.9648 H 1 LGD 0.0266
42 H9 -5.1652 3.0840 1.8417 H 1 LGD 0.0266
43 H10 -4.7853 1.6086 2.7517 H 1 LGD 0.0266
44 H11 -1.5410 -1.6471 -0.8054 H 1 LGD 0.1511
45 H12 -2.8472 0.4264 -0.9054 H 1 LGD 0.1186
46 H13 -2.4379 0.9045 3.3692 H 1 LGD 0.1186
47 H14 -1.1424 -1.1815 3.4794 H 1 LGD 0.1511
48 H15 -0.2357 -3.0174 -0.6262 H 1 LGD 0.3559
49 H16 0.5042 -5.3620 0.9484 H 1 LGD 0.0630
50 H17 2.3601 -3.9117 1.6459 H 1 LGD 0.0300
51 H18 2.9591 -5.1739 0.5836 H 1 LGD 0.0300
52 H19 3.0466 -3.5556 -1.3378 H 1 LGD 0.0472
53 H20 2.3760 -2.2793 -0.3183 H 1 LGD 0.0472
@BOND
1 1 2 ar
2 1 12 ar
3 2 3 1
4 2 4 ar
5 4 5 ar
6 5 6 1
7 5 7 ar
8 7 8 ar
9 7 12 ar
10 8 9 ar
11 9 10 ar
12 9 13 1
13 10 11 ar
14 11 12 ar
15 13 14 1
16 14 15 1
17 14 19 1
18 16 17 ar
19 16 21 ar
20 16 22 1
21 17 18 ar
22 18 19 ar
23 19 20 ar
24 20 21 ar
25 22 23 2
26 22 24 am
27 24 25 1
28 25 26 1
29 25 29 1
30 26 27 2
31 26 28 1
32 29 30 1
33 30 31 1
34 31 32 2
35 31 33 1
36 3 34 1
37 3 35 1
38 6 36 1
39 6 37 1
40 10 38 1
41 13 39 1
42 13 40 1
43 15 41 1
44 15 42 1
45 15 43 1
46 17 44 1
47 18 45 1
48 20 46 1
49 21 47 1
50 24 48 1
51 25 49 1
52 29 50 1
53 29 51 1
54 30 52 1
55 30 53 1