@COMMENT
LIGANDBOX_ID = PDB_LIGAND-00012825-25
SOURCE = PDB_LIGAND
SUPPLIER = PDB_LIGAND
IDNUMBER = NT1
MOLECULAR_FORMULA = C55H92O54S6
MOLECULAR_WEIGHT = 1809.677
MOLECULAR_CHARGE = -6
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 54
HOMO = 1.3604
LUMO = 8.7686
NUM_OF_CHIRAL_ATOMS = 33
LOGS =
LOGP = -8.7260
NOTE =
@MOLECULE
PDB_LIGAND-00012825-25
207 213 0 0 0
SMALL
USER_CHARGES
@ATOM
1 C1 -1.5410 -12.6520 5.9920 C.3 1 UNK -0.1817
2 H1 -0.5500 -12.9190 6.3600 H 1 UNK 0.0988
3 H2 -2.2770 -12.9170 6.7490 H 1 UNK 0.0988
4 C2 -1.5960 -11.1430 5.7180 C.3 1 UNK 0.0546
5 H3 -2.5820 -10.8530 5.3550 H 1 UNK 0.1023
6 O1 -0.6100 -10.8580 4.7110 O.3 1 UNK -0.2990
7 C3 -1.2410 -10.3080 6.9570 C.3 1 UNK -0.0027
8 H4 -0.2290 -10.5480 7.2880 H 1 UNK 0.0899
9 H5 -1.2850 -9.2480 6.7000 H 1 UNK 0.0899
10 O2 -2.1790 -10.5830 8.0280 O.3 1 UNK -0.3169
11 C4 -1.9940 -9.8000 9.2280 C.3 1 UNK -0.0566
12 H6 -2.7470 -10.0850 9.9620 H 1 UNK 0.0835
13 H7 -0.9990 -9.9850 9.6360 H 1 UNK 0.0835
14 H8 -2.0990 -8.7400 8.9930 H 1 UNK 0.0835
15 C5 -1.8410 -13.4290 4.6990 C.3 1 UNK 0.0471
16 H9 -2.8740 -13.2330 4.4120 H 1 UNK 0.0890
17 O3 -1.7000 -14.8420 5.0360 O.3 1 UNK -0.3099
18 C6 -2.1470 -15.8380 4.0860 C.3 1 UNK -0.0497
19 H10 -1.4870 -15.8480 3.2200 H 1 UNK 0.0614
20 H11 -3.1670 -15.6130 3.7710 H 1 UNK 0.0614
21 H12 -2.1210 -16.8170 4.5630 H 1 UNK 0.0614
22 C7 -0.9070 -13.0160 3.5280 C.3 1 UNK 0.0010
23 H13 0.0760 -13.4630 3.6790 H 1 UNK 0.1005
24 O4 -1.5070 -13.5350 2.3020 O.3 1 UNK -0.3169
25 C8 -0.7140 -13.5350 1.0900 C.3 1 UNK -0.0526
26 H14 0.2300 -14.0500 1.2680 H 1 UNK 0.0729
27 H15 -1.2660 -14.0510 0.3050 H 1 UNK 0.0729
28 H16 -0.5170 -12.5140 0.7660 H 1 UNK 0.0729
29 C9 -0.7560 -11.4760 3.4130 C.3 1 UNK 0.1620
30 H17 -1.6500 -11.0410 2.9270 H 1 UNK 0.0938
31 O5 0.4150 -11.1570 2.6220 O.3 1 UNK -0.2975
32 C10 0.7330 -9.7510 2.3990 C.3 1 UNK -0.0067
33 H18 0.2100 -9.1130 3.1140 H 1 UNK 0.1507
34 C11 0.2820 -9.4010 0.9610 C.3 1 UNK 0.0414
35 H19 0.5640 -10.2100 0.2870 H 1 UNK 0.0730
36 O6 0.9120 -8.1970 0.4780 O.3 1 UNK -0.2714
37 C12 -1.2350 -9.1590 0.8780 C.3 1 UNK -0.0084
38 H20 -1.6020 -8.7520 1.8210 H 1 UNK 0.0987
39 H21 -1.4380 -8.4340 0.0890 H 1 UNK 0.0987
40 C13 2.2520 -9.5530 2.6100 C.3 1 UNK 0.0145
41 H22 2.8050 -10.3180 2.0650 H 1 UNK 0.0770
42 O7 2.5550 -9.6480 4.0320 O.3 1 UNK -0.2703
43 C14 2.8550 -10.9460 4.5890 C.3 1 UNK -0.0490
44 H23 3.7080 -11.3760 4.0650 H 1 UNK 0.0579
45 H24 3.1020 -10.8240 5.6430 H 1 UNK 0.0579
46 H25 1.9930 -11.6050 4.4970 H 1 UNK 0.0579
47 C15 2.7200 -8.1690 2.1090 C.3 1 UNK 0.0250
48 H26 2.2420 -7.3780 2.6930 H 1 UNK 0.1716
49 O8 4.1670 -8.1110 2.2600 O.3 1 UNK -0.2882
50 C16 4.7190 -6.7980 2.5420 C.3 1 UNK -0.0525
51 H27 4.5160 -6.1150 1.7170 H 1 UNK 0.0727
52 H28 5.7960 -6.8830 2.6790 H 1 UNK 0.0727
53 H29 4.2690 -6.3990 3.4530 H 1 UNK 0.0727
54 C17 2.3400 -8.0420 0.6180 C.3 1 UNK 0.1859
55 H30 2.8410 -8.8310 0.0250 H 1 UNK 0.0463
56 O9 -1.9340 -10.3880 0.5580 O.3 1 UNK -0.3185
57 C18 -3.3720 -10.2960 0.5020 C.3 1 UNK -0.0492
58 H31 -3.7830 -11.2760 0.2610 H 1 UNK 0.0597
59 H32 -3.7540 -9.9690 1.4700 H 1 UNK 0.0597
60 H33 -3.6610 -9.5790 -0.2670 H 1 UNK 0.0597
61 O10 2.7630 -6.7620 0.0890 O.3 1 UNK -0.1860
62 C19 2.2340 -6.2830 -1.1770 C.3 1 UNK -0.0074
63 H34 1.7160 -7.1040 -1.6670 H 1 UNK 0.0591
64 C20 3.4640 -5.9170 -2.0580 C.3 1 UNK -0.0076
65 H35 4.3050 -5.6440 -1.4180 H 1 UNK 0.1540
66 O11 3.1660 -4.7990 -2.9410 O.3 1 UNK -0.2921
67 C21 3.8220 -7.1720 -2.8840 C.3 1 UNK 0.0569
68 H36 3.0170 -7.3790 -3.5880 H 1 UNK 0.0853
69 H37 3.9240 -8.0200 -2.2070 H 1 UNK 0.0853
70 O12 5.0640 -7.0310 -3.6200 O.3 1 UNK -0.7255
71 S1 5.4350 -8.2460 -4.5280 S.o2 1 UNK 2.6464
72 O13 6.7650 -7.8810 -5.0910 O.co2 1 UNK -1.0409
73 O14 4.3400 -8.3060 -5.5390 O.co2 1 UNK -1.0409
74 O15 5.4590 -9.4220 -3.6110 O.co2 1 UNK -1.0409
75 C22 1.2000 -5.1530 -0.8740 C.3 1 UNK 0.0254
76 H38 1.4750 -4.7090 0.0840 H 1 UNK 0.2093
77 O16 -0.1400 -5.7450 -0.7280 O.3 1 UNK -0.2119
78 C23 -0.8400 -6.3310 -1.8530 C.3 1 UNK -0.0604
79 H39 -1.0370 -5.5740 -2.6100 H 1 UNK 0.0455
80 H40 -0.2600 -7.1460 -2.2840 H 1 UNK 0.0455
81 H41 -1.7910 -6.7250 -1.4980 H 1 UNK 0.0455
82 C24 1.1680 -4.0090 -1.9250 C.3 1 UNK 0.0002
83 H42 0.6730 -4.3590 -2.8270 H 1 UNK 0.0475
84 O17 0.5010 -2.7830 -1.4910 O.3 1 UNK -0.2526
85 C25 -0.6740 -2.8330 -0.6470 C.3 1 UNK -0.0500
86 H43 -1.4550 -3.4180 -1.1330 H 1 UNK 0.0695
87 H44 -0.4210 -3.2790 0.3150 H 1 UNK 0.0695
88 H45 -1.0300 -1.8170 -0.4780 H 1 UNK 0.0695
89 C26 2.5990 -3.6260 -2.3140 C.3 1 UNK 0.1712
90 H46 2.5920 -2.7880 -3.0380 H 1 UNK 0.1025
91 O18 3.3390 -3.2440 -1.1240 O.3 1 UNK -0.2689
92 C27 4.2430 -2.1140 -1.2230 C.3 1 UNK 0.0375
93 H47 4.7280 -2.1990 -2.1970 H 1 UNK 0.0931
94 C28 5.3420 -2.2730 -0.1500 C.3 1 UNK 0.0607
95 H48 5.4090 -3.3320 0.1020 H 1 UNK 0.1109
96 O19 5.0780 -1.5660 1.0900 O.3 1 UNK -0.2695
97 C29 6.7220 -1.8580 -0.7130 C.3 1 UNK 0.1822
98 H49 7.0040 -2.5650 -1.5170 H 1 UNK 0.0684
99 O20 7.7230 -1.9240 0.3040 O.3 1 UNK -0.3197
100 H50 7.5190 -1.2350 0.9510 H 1 UNK 0.1955
101 O21 6.7060 -0.5440 -1.2760 O.3 1 UNK -0.3197
102 H51 6.6320 0.0880 -0.5480 H 1 UNK 0.1955
103 C30 3.4350 -0.7890 -1.1950 C.3 1 UNK 0.0382
104 H52 2.3800 -1.0590 -1.2170 H 1 UNK 0.0828
105 O22 3.7180 -0.0830 -2.4460 O.3 1 UNK -0.2777
106 C31 3.0420 1.1690 -2.7050 C.3 1 UNK -0.0469
107 H53 1.9650 1.0310 -2.6070 H 1 UNK 0.0516
108 H54 3.3810 1.9250 -1.9950 H 1 UNK 0.0516
109 H55 3.2800 1.4990 -3.7160 H 1 UNK 0.0516
110 C32 3.6250 0.1170 0.0520 C.3 1 UNK 0.0176
111 H56 4.4630 0.7980 -0.0980 H 1 UNK 0.1174
112 O23 2.3770 0.8760 0.1840 O.3 1 UNK -0.3019
113 C33 2.3180 1.9750 1.1260 C.3 1 UNK -0.0493
114 H57 2.2640 1.5950 2.1460 H 1 UNK 0.0756
115 H58 1.4250 2.5660 0.9290 H 1 UNK 0.0756
116 H59 3.2020 2.6040 1.0160 H 1 UNK 0.0756
117 C34 3.8960 -0.7530 1.2990 C.3 1 UNK 0.1653
118 H60 3.0290 -1.4170 1.4830 H 1 UNK 0.1094
119 O24 4.1110 0.0940 2.4660 O.3 1 UNK -0.2437
120 C35 4.8130 -0.3800 3.6580 C.3 1 UNK 0.0112
121 H61 5.5490 -1.1350 3.3860 H 1 UNK 0.1126
122 C36 3.7580 -1.0190 4.6120 C.3 1 UNK -0.0200
123 H62 2.9210 -0.3270 4.7170 H 1 UNK 0.1168
124 O25 4.3470 -1.2310 5.9220 O.3 1 UNK -0.3216
125 C37 3.2210 -2.3930 4.1390 C.3 1 UNK 0.0585
126 H63 3.7280 -3.1880 4.6840 H 1 UNK 0.0890
127 H64 3.4050 -2.5480 3.0820 H 1 UNK 0.0890
128 O26 1.7910 -2.4920 4.3880 O.3 1 UNK -0.7313
129 S2 1.0670 -3.7690 3.8640 S.o2 1 UNK 2.6318
130 O27 1.1250 -3.6260 2.3840 O.co2 1 UNK -1.0231
131 O28 1.8570 -4.9190 4.3900 O.co2 1 UNK -1.0231
132 O29 -0.3050 -3.6570 4.4350 O.co2 1 UNK -1.0231
133 C38 5.6010 0.8140 4.3050 C.3 1 UNK 0.1019
134 H65 4.9640 1.6930 4.4000 H 1 UNK 0.1331
135 O30 6.7970 1.1250 3.5120 O.3 1 UNK -0.7079
136 S3 6.7340 2.0110 2.2230 S.o2 1 UNK 2.6359
137 O31 7.9650 2.8460 2.3090 O.co2 1 UNK -1.0362
138 O32 6.7990 1.0190 1.1180 O.co2 1 UNK -1.0362
139 O33 5.4670 2.7940 2.2750 O.co2 1 UNK -1.0362
140 C39 6.1010 0.4000 5.7170 C.3 1 UNK 0.0887
141 H66 6.7870 -0.4340 5.5770 H 1 UNK 0.1252
142 O34 6.8250 1.4590 6.4310 O.3 1 UNK -0.6935
143 S4 7.5520 1.1110 7.7800 S.o2 1 UNK 2.6459
144 O35 6.5230 1.3480 8.8330 O.co2 1 UNK -1.0474
145 O36 8.6840 2.0770 7.8390 O.co2 1 UNK -1.0474
146 O37 7.9780 -0.3150 7.6850 O.co2 1 UNK -1.0474
147 C40 4.9210 -0.0810 6.5780 C.3 1 UNK 0.1273
148 H67 5.3090 -0.4120 7.5590 H 1 UNK 0.1520
149 O38 3.9370 0.9810 6.7750 O.3 1 UNK -0.2863
150 C41 3.2900 1.0180 8.0820 C.3 1 UNK 0.0309
151 H68 3.8230 0.3290 8.7360 H 1 UNK 0.1065
152 C42 3.4140 2.4510 8.6610 C.3 1 UNK -0.0233
153 H69 4.4180 2.8220 8.4490 H 1 UNK 0.1877
154 O39 2.4580 3.3430 8.0080 O.3 1 UNK -0.2832
155 C43 3.2010 2.4840 10.1970 C.3 1 UNK 0.1581
156 H70 2.1550 2.2300 10.4540 H 1 UNK 0.0943
157 O40 3.5000 3.7820 10.7180 O.3 1 UNK -0.3606
158 H71 2.7090 4.3300 10.6970 H 1 UNK 0.2569
159 O41 4.0660 1.5450 10.8450 O.3 1 UNK -0.3606
160 H72 4.9550 1.6600 10.4880 H 1 UNK 0.2569
161 C44 1.8210 0.5440 7.9960 C.3 1 UNK 0.0345
162 H73 1.4150 0.4750 9.0050 H 1 UNK 0.1180
163 O42 1.8540 -0.8040 7.4430 O.3 1 UNK -0.2717
164 C45 0.6510 -1.5570 7.1660 C.3 1 UNK -0.0451
165 H74 0.1520 -1.1440 6.2900 H 1 UNK 0.0596
166 H75 0.9260 -2.5890 6.9460 H 1 UNK 0.0596
167 H76 -0.0140 -1.5290 8.0280 H 1 UNK 0.0596
168 C46 0.9700 1.5620 7.1950 C.3 1 UNK -0.0191
169 H77 1.3470 1.6310 6.1730 H 1 UNK 0.0935
170 O43 -0.4290 1.1540 7.2120 O.3 1 UNK -0.3085
171 C47 -1.1740 1.3950 5.9960 C.3 1 UNK -0.0520
172 H78 -0.7050 0.8550 5.1710 H 1 UNK 0.0592
173 H79 -1.1880 2.4610 5.7710 H 1 UNK 0.0592
174 H80 -2.1950 1.0380 6.1260 H 1 UNK 0.0592
175 C48 1.0730 2.9300 7.9140 C.3 1 UNK 0.1549
176 H81 0.6750 2.8330 8.9420 H 1 UNK 0.1038
177 O44 0.2750 3.9360 7.2270 O.3 1 UNK -0.3260
178 C49 0.3950 5.3500 7.5820 C.3 1 UNK 0.0034
179 H82 1.4460 5.6350 7.5230 H 1 UNK 0.1044
180 C50 -0.1340 5.5510 9.0320 C.3 1 UNK -0.0040
181 H83 -0.3990 4.5810 9.4510 H 1 UNK 0.1681
182 O45 -1.3620 6.3270 9.0060 O.3 1 UNK -0.2716
183 C51 0.9430 6.1680 9.9610 C.3 1 UNK 0.0306
184 H84 1.9270 5.9410 9.5530 H 1 UNK 0.0912
185 H85 0.8560 7.2510 10.0160 H 1 UNK 0.0912
186 O46 0.9220 5.5730 11.2920 O.3 1 UNK -0.6667
187 S5 0.1050 6.2560 12.4330 S.o2 1 UNK 2.6341
188 O47 0.6440 5.6200 13.6670 O.co2 1 UNK -1.0429
189 O48 -1.3080 5.8890 12.1430 O.co2 1 UNK -1.0429
190 O49 0.3970 7.7140 12.3300 O.co2 1 UNK -1.0429
191 C52 -0.3810 6.1680 6.5050 C.3 1 UNK 0.0439
192 H86 -1.2830 5.6150 6.2440 H 1 UNK 0.0915
193 O50 0.4460 6.3180 5.3080 O.3 1 UNK -0.2847
194 C53 0.8630 5.1390 4.5750 C.3 1 UNK -0.0493
195 H87 1.5880 4.5710 5.1580 H 1 UNK 0.0547
196 H88 1.3300 5.4480 3.6410 H 1 UNK 0.0547
197 H89 -0.0050 4.5150 4.3580 H 1 UNK 0.0547
198 C54 -0.8170 7.5950 6.9400 C.3 1 UNK 0.0739
199 H90 0.0340 8.2680 6.8320 H 1 UNK 0.1167
200 O51 -1.8910 8.0400 6.0500 O.3 1 UNK -0.7297
201 S6 -2.0920 9.5730 5.8060 S.o2 1 UNK 2.6392
202 O52 -2.2440 10.1960 7.1510 O.co2 1 UNK -1.0424
203 O53 -3.3270 9.6330 4.9730 O.co2 1 UNK -1.0424
204 O54 -0.8570 10.0010 5.0930 O.co2 1 UNK -1.0424
205 C55 -1.3210 7.6440 8.4000 C.3 1 UNK -0.0395
206 H91 -2.3310 8.0510 8.4290 H 1 UNK 0.1204
207 H92 -0.6790 8.3000 8.9860 H 1 UNK 0.1204
@BOND
1 1 4 1
2 1 15 1
3 1 2 1
4 1 3 1
5 4 6 1
6 4 7 1
7 4 5 1
8 6 29 1
9 7 10 1
10 7 8 1
11 7 9 1
12 10 11 1
13 11 12 1
14 11 13 1
15 11 14 1
16 15 17 1
17 15 22 1
18 15 16 1
19 17 18 1
20 18 19 1
21 18 20 1
22 18 21 1
23 22 24 1
24 22 29 1
25 22 23 1
26 24 25 1
27 25 26 1
28 25 27 1
29 25 28 1
30 29 31 1
31 29 30 1
32 31 32 1
33 32 34 1
34 32 40 1
35 32 33 1
36 34 36 1
37 34 37 1
38 34 35 1
39 36 54 1
40 37 56 1
41 37 38 1
42 37 39 1
43 40 42 1
44 40 47 1
45 40 41 1
46 42 43 1
47 43 44 1
48 43 45 1
49 43 46 1
50 47 49 1
51 47 54 1
52 47 48 1
53 49 50 1
54 50 51 1
55 50 52 1
56 50 53 1
57 54 61 1
58 54 55 1
59 56 57 1
60 57 58 1
61 57 59 1
62 57 60 1
63 61 62 1
64 62 64 1
65 62 75 1
66 62 63 1
67 64 66 1
68 64 67 1
69 64 65 1
70 66 89 1
71 67 70 1
72 67 68 1
73 67 69 1
74 70 71 1
75 71 72 1
76 71 73 2
77 71 74 2
78 75 77 1
79 75 82 1
80 75 76 1
81 77 78 1
82 78 79 1
83 78 80 1
84 78 81 1
85 82 84 1
86 82 89 1
87 82 83 1
88 84 85 1
89 85 86 1
90 85 87 1
91 85 88 1
92 89 91 1
93 89 90 1
94 91 92 1
95 92 94 1
96 92 103 1
97 92 93 1
98 94 96 1
99 94 97 1
100 94 95 1
101 96 117 1
102 97 99 1
103 97 101 1
104 97 98 1
105 99 100 1
106 101 102 1
107 103 105 1
108 103 110 1
109 103 104 1
110 105 106 1
111 106 107 1
112 106 108 1
113 106 109 1
114 110 112 1
115 110 117 1
116 110 111 1
117 112 113 1
118 113 114 1
119 113 115 1
120 113 116 1
121 117 119 1
122 117 118 1
123 119 120 1
124 120 122 1
125 120 133 1
126 120 121 1
127 122 124 1
128 122 125 1
129 122 123 1
130 124 147 1
131 125 128 1
132 125 126 1
133 125 127 1
134 128 129 1
135 129 130 1
136 129 131 2
137 129 132 2
138 133 135 1
139 133 140 1
140 133 134 1
141 135 136 1
142 136 137 1
143 136 138 2
144 136 139 2
145 140 142 1
146 140 147 1
147 140 141 1
148 142 143 1
149 143 144 1
150 143 145 2
151 143 146 2
152 147 149 1
153 147 148 1
154 149 150 1
155 150 152 1
156 150 161 1
157 150 151 1
158 152 154 1
159 152 155 1
160 152 153 1
161 154 175 1
162 155 157 1
163 155 159 1
164 155 156 1
165 157 158 1
166 159 160 1
167 161 163 1
168 161 168 1
169 161 162 1
170 163 164 1
171 164 165 1
172 164 166 1
173 164 167 1
174 168 170 1
175 168 175 1
176 168 169 1
177 170 171 1
178 171 172 1
179 171 173 1
180 171 174 1
181 175 177 1
182 175 176 1
183 177 178 1
184 178 180 1
185 178 191 1
186 178 179 1
187 180 182 1
188 180 183 1
189 180 181 1
190 182 205 1
191 183 186 1
192 183 184 1
193 183 185 1
194 186 187 1
195 187 188 1
196 187 189 2
197 187 190 2
198 191 193 1
199 191 198 1
200 191 192 1
201 193 194 1
202 194 195 1
203 194 196 1
204 194 197 1
205 198 200 1
206 198 205 1
207 198 199 1
208 200 201 1
209 201 202 1
210 201 203 2
211 201 204 2
212 205 206 1
213 205 207 1