@COMMENT
LIGANDBOX_ID = PDB_LIGAND-00016309-03
SOURCE = PDB_LIGAND
SUPPLIER = PDB_LIGAND
IDNUMBER = VLB
MOLECULAR_FORMULA = C46H60N4O9
MOLECULAR_WEIGHT = 813.005
MOLECULAR_CHARGE = 2
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 9
HOMO = -13.0890
LUMO = -5.1805
NUM_OF_CHIRAL_ATOMS = 11
LOGS = -7.2060
LOGP = 4.0225
NOTE =
@MOLECULE
PDB_LIGAND-00016309-03
119 127 0 0 0
SMALL
USER_CHARGES
@ATOM
1 C1 1.6490 1.5680 -0.3150 C.3 1 UNK -0.2196
2 H1 1.2580 2.1940 -1.1160 H 1 UNK 0.0912
3 H2 0.8200 1.2960 0.3380 H 1 UNK 0.0912
4 H3 2.0590 0.6530 -0.7390 H 1 UNK 0.0912
5 C2 2.7090 2.3280 0.5030 C.3 1 UNK -0.2048
6 H4 3.0440 1.6700 1.3030 H 1 UNK 0.0982
7 H5 2.2130 3.1780 0.9730 H 1 UNK 0.0982
8 C3 3.9310 2.8440 -0.3080 C.3 1 UNK 0.0792
9 O1 3.4680 3.7080 -1.3450 O.3 1 UNK -0.2974
10 H6 2.6780 3.3530 -1.7640 H 1 UNK 0.2305
11 C4 4.6830 1.6520 -1.0090 C.3 1 UNK -0.1445
12 H7 5.2420 2.0410 -1.8780 H 1 UNK 0.1469
13 H8 3.9720 0.8810 -1.3450 H 1 UNK 0.1469
14 C5 4.8350 3.7240 0.6490 C.3 1 UNK -0.1421
15 H9 4.2150 4.3020 1.3340 H 1 UNK 0.1189
16 H10 5.4150 4.4370 0.0610 H 1 UNK 0.1189
17 C6 5.7960 2.8210 1.4540 C.3 1 UNK -0.1479
18 H11 5.1460 2.1200 1.9770 H 1 UNK 0.1033
19 C7 6.7940 3.2750 2.5370 C.3 1 UNK -0.1266
20 H12 6.1740 3.6560 3.3490 H 1 UNK 0.1035
21 H13 7.3800 4.1110 2.1580 H 1 UNK 0.1035
22 C8 6.5620 2.1530 0.3340 C.3 1 UNK -0.1366
23 H14 7.5240 1.7690 0.6770 H 1 UNK 0.1538
24 H15 6.7280 2.8330 -0.5220 H 1 UNK 0.1538
25 N1 5.6810 1.0370 -0.0600 N.4 1 UNK -0.0119
26 H59 5.1420 0.7750 0.7830 H 1 UNK 0.2491
27 C9 6.4990 -0.1910 -0.3640 C.3 1 UNK -0.1072
28 H16 7.1030 -0.0150 -1.2720 H 1 UNK 0.1408
29 H17 5.8000 -1.0290 -0.5300 H 1 UNK 0.1408
30 C10 7.4300 -0.5190 0.8500 C.3 1 UNK -0.1068
31 H18 8.3580 0.0310 0.7370 H 1 UNK 0.1221
32 H19 7.7260 -1.5650 0.7830 H 1 UNK 0.1221
33 C11 6.7890 -0.2530 2.2320 C.ar 1 UNK -0.1907
34 C12 5.8710 -1.0720 2.7390 C.ar 1 UNK -0.0871
35 C13 5.3990 -2.2340 2.2850 C.ar 1 UNK -0.1097
36 H20 5.7580 -2.6700 1.3640 H 1 UNK 0.1280
37 C14 4.4710 -2.8780 2.9970 C.ar 1 UNK -0.1245
38 H21 4.0830 -3.8230 2.6430 H 1 UNK 0.1476
39 C15 4.0230 -2.3700 4.1480 C.ar 1 UNK -0.0878
40 H22 3.2770 -2.9060 4.7180 H 1 UNK 0.1503
41 C16 4.4940 -1.2080 4.6000 C.ar 1 UNK -0.1433
42 H23 4.1410 -0.7890 5.5310 H 1 UNK 0.1399
43 C17 5.4100 -0.5810 3.8750 C.ar 1 UNK 0.0080
44 N2 6.0380 0.5980 4.1110 N.ar 1 UNK -0.1869
45 H24 6.0760 1.0550 5.0010 H 1 UNK 0.2623
46 C18 6.9300 0.7850 3.0900 C.ar 1 UNK 0.0111
47 C19 7.7340 2.1210 3.1130 C.3 1 UNK 0.0743
48 C20 9.0500 2.0280 2.3230 C.2 1 UNK 0.3005
49 O2 9.4340 2.8810 1.4750 O.2 1 UNK -0.3643
50 O3 9.7700 0.9200 2.6270 O.3 1 UNK -0.2337
51 C21 11.0680 0.6850 2.0290 C.3 1 UNK -0.0590
52 H25 11.4680 -0.2580 2.4050 H 1 UNK 0.1004
53 H26 11.7480 1.4950 2.2960 H 1 UNK 0.1004
54 H27 10.9730 0.6280 0.9440 H 1 UNK 0.1004
55 C22 8.1930 2.4470 4.5780 C.ar 1 UNK -0.1721
56 C23 8.2730 3.7380 4.9540 C.ar 1 UNK -0.0456
57 H28 8.0670 4.5440 4.2700 H 1 UNK 0.1180
58 C24 8.6230 4.0580 6.1920 C.ar 1 UNK -0.2237
59 C25 8.6740 5.4380 6.8280 C.3 1 UNK -0.0119
60 C26 7.3000 6.1440 6.6380 C.3 1 UNK -0.0477
61 H29 6.8450 5.5790 5.8090 H 1 UNK 0.1188
62 C27 9.6860 6.3790 6.1230 C.3 1 UNK -0.1682
63 H30 10.2060 7.0020 6.8510 H 1 UNK 0.1396
64 H31 10.4220 5.8310 5.5340 H 1 UNK 0.1396
65 C28 8.8210 7.2890 5.2470 C.3 1 UNK -0.1257
66 H32 9.3130 8.2580 5.0500 H 1 UNK 0.1424
67 H33 8.5880 6.7700 4.3020 H 1 UNK 0.1424
68 N3 7.5410 7.4900 5.9970 N.4 1 UNK -0.0074
69 H60 6.7700 7.7120 5.3470 H 1 UNK 0.2483
70 C29 7.6440 8.6110 6.9920 C.3 1 UNK -0.0833
71 H34 8.5160 8.4350 7.6450 H 1 UNK 0.1558
72 H35 7.7650 9.5630 6.4460 H 1 UNK 0.1558
73 C30 6.3860 8.6550 7.8250 C.2 1 UNK -0.2029
74 H36 6.0050 9.6090 8.1650 H 1 UNK 0.1811
75 C31 5.7560 7.5440 8.1800 C.2 1 UNK -0.1087
76 H37 4.8830 7.6530 8.8080 H 1 UNK 0.1763
77 C32 6.2180 6.1350 7.7730 C.3 1 UNK -0.0056
78 C33 5.0350 5.3850 7.0810 C.3 1 UNK -0.1578
79 H38 5.3600 4.3800 6.8090 H 1 UNK 0.0776
80 H39 4.7940 5.9050 6.1520 H 1 UNK 0.0776
81 C34 3.7050 5.2430 7.8450 C.3 1 UNK -0.2080
82 H40 3.8200 4.6130 8.7210 H 1 UNK 0.0921
83 H41 2.9700 4.7680 7.1960 H 1 UNK 0.0921
84 H42 3.3090 6.2120 8.1420 H 1 UNK 0.0921
85 C35 6.7140 5.3160 9.0120 C.3 1 UNK 0.0433
86 H43 6.6390 4.2530 8.7750 H 1 UNK 0.1464
87 O4 5.8640 5.6150 10.1620 O.3 1 UNK -0.2840
88 C36 5.2840 4.6340 10.9060 C.2 1 UNK 0.3041
89 C37 4.6190 5.2080 12.1350 C.3 1 UNK -0.2077
90 H44 5.3680 5.6900 12.7610 H 1 UNK 0.1238
91 H45 4.1340 4.4110 12.6980 H 1 UNK 0.1238
92 H46 3.8750 5.9450 11.8370 H 1 UNK 0.1238
93 O5 5.2880 3.4100 10.6020 O.2 1 UNK -0.3336
94 C38 8.1930 5.5970 9.4050 C.3 1 UNK 0.0975
95 C39 8.5660 4.9740 10.7550 C.2 1 UNK 0.2700
96 O6 9.1380 5.5980 11.6920 O.2 1 UNK -0.3138
97 O7 8.2110 3.6660 10.8410 O.3 1 UNK -0.2504
98 C40 8.4510 2.9300 12.0650 C.3 1 UNK -0.0578
99 H47 8.0910 1.9080 11.9450 H 1 UNK 0.1006
100 H48 7.9190 3.4060 12.8890 H 1 UNK 0.1006
101 H49 9.5200 2.9150 12.2810 H 1 UNK 0.1006
102 O8 8.3960 7.0190 9.5230 O.3 1 UNK -0.3328
103 H50 8.1720 7.2820 10.4230 H 1 UNK 0.2491
104 C41 9.1520 5.1190 8.2870 C.3 1 UNK 0.0440
105 H51 10.1320 5.5650 8.4700 H 1 UNK 0.1361
106 N4 9.3190 3.6590 8.2440 N.pl3 1 UNK -0.2628
107 C42 10.4830 3.1390 8.9670 C.3 1 UNK -0.0844
108 H52 10.2200 2.1960 9.4480 H 1 UNK 0.0973
109 H53 10.8180 3.8380 9.7340 H 1 UNK 0.0973
110 H54 11.3040 2.9630 8.2700 H 1 UNK 0.0973
111 C43 8.9460 3.1270 7.0460 C.ar 1 UNK 0.1647
112 C44 8.9320 1.8520 6.6890 C.ar 1 UNK -0.2548
113 H55 9.2440 1.1230 7.4200 H 1 UNK 0.1640
114 C45 8.5590 1.4750 5.4560 C.ar 1 UNK 0.2003
115 O9 8.5990 0.1580 5.1030 O.3 1 UNK -0.2231
116 C46 8.7120 -0.9610 6.0200 C.3 1 UNK -0.0457
117 H56 9.6730 -0.9270 6.5330 H 1 UNK 0.0968
118 H57 8.6450 -1.8890 5.4530 H 1 UNK 0.0968
119 H58 7.8990 -0.9250 6.7460 H 1 UNK 0.0968
@BOND
1 1 5 1
2 1 2 1
3 1 3 1
4 1 4 1
5 5 8 1
6 5 6 1
7 5 7 1
8 8 9 1
9 8 11 1
10 8 14 1
11 9 10 1
12 11 25 1
13 11 12 1
14 11 13 1
15 14 17 1
16 14 15 1
17 14 16 1
18 17 19 1
19 17 22 1
20 17 18 1
21 19 47 1
22 19 20 1
23 19 21 1
24 22 25 1
25 22 23 1
26 22 24 1
27 25 27 1
28 27 30 1
29 27 28 1
30 27 29 1
31 30 33 1
32 30 31 1
33 30 32 1
34 33 34 ar
35 33 46 ar
36 34 35 ar
37 34 43 ar
38 35 37 ar
39 35 36 1
40 37 39 ar
41 37 38 1
42 39 41 ar
43 39 40 1
44 41 43 ar
45 41 42 1
46 43 44 ar
47 44 46 ar
48 44 45 1
49 46 47 1
50 47 48 1
51 47 55 1
52 48 49 2
53 48 50 1
54 50 51 1
55 51 52 1
56 51 53 1
57 51 54 1
58 55 56 ar
59 55 114 ar
60 56 58 ar
61 56 57 1
62 58 59 1
63 58 111 ar
64 59 60 1
65 59 62 1
66 59 104 1
67 60 68 1
68 60 77 1
69 60 61 1
70 62 65 1
71 62 63 1
72 62 64 1
73 65 68 1
74 65 66 1
75 65 67 1
76 68 70 1
77 70 73 1
78 70 71 1
79 70 72 1
80 73 75 2
81 73 74 1
82 75 77 1
83 75 76 1
84 77 78 1
85 77 85 1
86 78 81 1
87 78 79 1
88 78 80 1
89 81 82 1
90 81 83 1
91 81 84 1
92 85 87 1
93 85 94 1
94 85 86 1
95 87 88 1
96 88 89 1
97 88 93 2
98 89 90 1
99 89 91 1
100 89 92 1
101 94 95 1
102 94 102 1
103 94 104 1
104 95 96 2
105 95 97 1
106 97 98 1
107 98 99 1
108 98 100 1
109 98 101 1
110 102 103 1
111 104 106 1
112 104 105 1
113 106 107 1
114 106 111 1
115 107 108 1
116 107 109 1
117 107 110 1
118 111 112 ar
119 112 114 ar
120 112 113 1
121 114 115 1
122 115 116 1
123 116 117 1
124 116 118 1
125 116 119 1
126 25 26 1
127 68 69 1