@COMMENT
LIGANDBOX_ID = PDB_LIGAND-00016309-05
SOURCE = PDB_LIGAND
SUPPLIER = PDB_LIGAND
IDNUMBER = VLB
MOLECULAR_FORMULA = C46H60N4O9
MOLECULAR_WEIGHT = 813.005
MOLECULAR_CHARGE = 2
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 9
HOMO = -13.0890
LUMO = -5.1805
NUM_OF_CHIRAL_ATOMS = 11
LOGS = -7.2060
LOGP = 4.0225
NOTE =
@MOLECULE
PDB_LIGAND-00016309-05
119 127 0 0 0
SMALL
USER_CHARGES
@ATOM
1 C1 6.2440 3.5820 3.1350 C.3 1 UNK -0.2196
2 H1 6.6750 4.5630 2.9400 H 1 UNK 0.0912
3 H2 5.9370 3.5470 4.1800 H 1 UNK 0.0912
4 H3 7.0030 2.8170 2.9810 H 1 UNK 0.0912
5 C2 5.0170 3.3380 2.2380 C.3 1 UNK -0.2048
6 H4 4.6120 2.3580 2.4870 H 1 UNK 0.0982
7 H5 4.2610 4.0760 2.5100 H 1 UNK 0.0982
8 C3 5.2820 3.4290 0.7090 C.3 1 UNK 0.0792
9 O1 5.8000 4.7240 0.4050 O.3 1 UNK -0.2974
10 H6 6.4390 5.0050 1.0680 H 1 UNK 0.2305
11 C4 6.3730 2.3850 0.2660 C.3 1 UNK -0.1445
12 H7 6.8470 2.7350 -0.6690 H 1 UNK 0.1469
13 H8 7.1430 2.2650 1.0450 H 1 UNK 0.1469
14 C5 3.8990 3.3030 -0.0510 C.3 1 UNK -0.1421
15 H9 3.1090 3.8050 0.5080 H 1 UNK 0.1189
16 H10 3.9630 3.7920 -1.0250 H 1 UNK 0.1189
17 C6 3.5290 1.8160 -0.2490 C.3 1 UNK -0.1479
18 H11 3.5200 1.3960 0.7570 H 1 UNK 0.1033
19 C7 2.2400 1.2650 -0.8900 C.3 1 UNK -0.1266
20 H12 1.4380 1.5630 -0.2140 H 1 UNK 0.1035
21 H13 2.0670 1.7720 -1.8390 H 1 UNK 0.1035
22 C8 4.7170 1.3350 -1.0510 C.3 1 UNK -0.1366
23 H14 4.4860 0.4260 -1.6090 H 1 UNK 0.1538
24 H15 5.0880 2.1050 -1.7520 H 1 UNK 0.1538
25 N1 5.7310 1.0500 -0.0170 N.4 1 UNK -0.0119
26 H59 5.2150 0.7990 0.8420 H 1 UNK 0.2491
27 C9 6.4920 -0.2030 -0.3650 C.3 1 UNK -0.1072
28 H16 7.1000 -0.0250 -1.2690 H 1 UNK 0.1408
29 H17 7.1470 -0.4460 0.4900 H 1 UNK 0.1408
30 C10 5.4910 -1.3800 -0.6080 C.3 1 UNK -0.1068
31 H18 5.1890 -1.3710 -1.6510 H 1 UNK 0.1221
32 H19 6.0300 -2.3190 -0.4920 H 1 UNK 0.1221
33 C11 4.2600 -1.3730 0.3280 C.ar 1 UNK -0.1907
34 C12 4.3560 -1.7450 1.6020 C.ar 1 UNK -0.0871
35 C13 5.3880 -2.2450 2.2840 C.ar 1 UNK -0.1097
36 H20 6.3450 -2.4200 1.8160 H 1 UNK 0.1280
37 C14 5.2240 -2.5510 3.5730 C.ar 1 UNK -0.1245
38 H21 6.0490 -2.9630 4.1370 H 1 UNK 0.1476
39 C15 4.0450 -2.3610 4.1730 C.ar 1 UNK -0.0878
40 H22 3.9240 -2.6190 5.2160 H 1 UNK 0.1503
41 C16 3.0160 -1.8600 3.4910 C.ar 1 UNK -0.1433
42 H23 2.0570 -1.7030 3.9650 H 1 UNK 0.1399
43 C17 3.2010 -1.5560 2.2140 C.ar 1 UNK 0.0080
44 N2 2.3270 -1.0390 1.3140 N.ar 1 UNK -0.1869
45 H24 1.3330 -1.0260 1.4240 H 1 UNK 0.2623
46 C18 2.9900 -0.9560 0.1190 C.ar 1 UNK 0.0111
47 C19 2.1970 -0.3200 -1.0640 C.3 1 UNK 0.0743
48 C20 2.7460 -0.7450 -2.4360 C.2 1 UNK 0.3005
49 O2 2.9980 0.0530 -3.3810 O.2 1 UNK -0.3643
50 O3 2.9390 -2.0840 -2.5360 O.3 1 UNK -0.2337
51 C21 3.3890 -2.6830 -3.7750 C.3 1 UNK -0.0590
52 H25 3.4810 -3.7610 -3.6370 H 1 UNK 0.1004
53 H26 2.6640 -2.4830 -4.5650 H 1 UNK 0.1004
54 H27 4.3590 -2.2720 -4.0560 H 1 UNK 0.1004
55 C22 0.7210 -0.8510 -1.0690 C.ar 1 UNK -0.1721
56 C23 -0.2560 -0.0250 -1.4900 C.ar 1 UNK -0.0456
57 H28 -0.0470 0.9690 -1.8450 H 1 UNK 0.1180
58 C24 -1.5210 -0.4230 -1.4890 C.ar 1 UNK -0.2237
59 C25 -2.7640 0.3950 -1.8050 C.3 1 UNK -0.0119
60 C26 -2.7560 1.7200 -0.9770 C.3 1 UNK -0.0477
61 H29 -1.7020 1.8150 -0.6710 H 1 UNK 0.1188
62 C27 -2.7800 0.8730 -3.2800 C.3 1 UNK -0.1682
63 H30 -3.7880 0.8260 -3.6930 H 1 UNK 0.1396
64 H31 -2.1100 0.2900 -3.9140 H 1 UNK 0.1396
65 C28 -2.3560 2.3430 -3.2130 C.3 1 UNK -0.1257
66 H32 -2.7350 2.9200 -4.0750 H 1 UNK 0.1424
67 H33 -1.2560 2.4040 -3.1540 H 1 UNK 0.1424
68 N3 -2.9230 2.8760 -1.9330 N.4 1 UNK -0.0074
69 H60 -2.3800 3.6890 -1.6020 H 1 UNK 0.2483
70 C29 -4.3550 3.3060 -2.1070 C.3 1 UNK -0.0833
71 H34 -4.9210 2.4800 -2.5710 H 1 UNK 0.1558
72 H35 -4.3830 4.1970 -2.7580 H 1 UNK 0.1558
73 C30 -4.9680 3.6330 -0.7660 C.2 1 UNK -0.2029
74 H36 -5.7340 4.3940 -0.7030 H 1 UNK 0.1811
75 C31 -4.6340 2.9620 0.3260 C.2 1 UNK -0.1087
76 H37 -5.1570 3.2100 1.2400 H 1 UNK 0.1763
77 C32 -3.5680 1.8580 0.3550 C.3 1 UNK -0.0056
78 C33 -2.4820 2.3010 1.3900 C.3 1 UNK -0.1578
79 H38 -1.6800 1.5640 1.4300 H 1 UNK 0.0776
80 H39 -2.0250 3.2290 1.0450 H 1 UNK 0.0776
81 C34 -2.9670 2.5480 2.8320 C.3 1 UNK -0.2080
82 H40 -3.5290 1.7010 3.2140 H 1 UNK 0.0921
83 H41 -2.1050 2.7060 3.4800 H 1 UNK 0.0921
84 H42 -3.5910 3.4380 2.8840 H 1 UNK 0.0921
85 C35 -4.2190 0.4860 0.7370 C.3 1 UNK 0.0433
86 H43 -4.9640 0.6720 1.5120 H 1 UNK 0.1464
87 O4 -3.1780 -0.3860 1.2730 O.3 1 UNK -0.2840
88 C36 -3.3060 -0.9930 2.4840 C.2 1 UNK 0.3041
89 C37 -2.1180 -1.8800 2.7730 C.3 1 UNK -0.2077
90 H44 -1.1990 -1.3070 2.6600 H 1 UNK 0.1238
91 H45 -2.1840 -2.2610 3.7910 H 1 UNK 0.1238
92 H46 -2.1100 -2.7130 2.0730 H 1 UNK 0.1238
93 O5 -4.2810 -0.8320 3.2660 O.2 1 UNK -0.3336
94 C38 -4.9360 -0.2110 -0.4660 C.3 1 UNK 0.0975
95 C39 -5.8610 -1.3640 -0.0420 C.2 1 UNK 0.2700
96 O6 -7.0750 -1.4520 -0.3840 O.2 1 UNK -0.3138
97 O7 -5.2520 -2.2950 0.7340 O.3 1 UNK -0.2504
98 C40 -6.0030 -3.4340 1.2230 C.3 1 UNK -0.0578
99 H47 -5.3540 -4.0510 1.8430 H 1 UNK 0.1006
100 H48 -6.8490 -3.0870 1.8180 H 1 UNK 0.1006
101 H49 -6.3670 -4.0230 0.3800 H 1 UNK 0.1006
102 O8 -5.7960 0.7400 -1.1240 O.3 1 UNK -0.3328
103 H50 -6.7130 0.5060 -0.9350 H 1 UNK 0.2491
104 C41 -3.9180 -0.6410 -1.5530 C.3 1 UNK 0.0440
105 H51 -4.4670 -0.8310 -2.4780 H 1 UNK 0.1361
106 N4 -3.1690 -1.8600 -1.2160 N.pl3 1 UNK -0.2628
107 C42 -3.7200 -3.1140 -1.7350 C.3 1 UNK -0.0844
108 H52 -3.6210 -3.8930 -0.9780 H 1 UNK 0.0973
109 H53 -4.7750 -3.0050 -1.9860 H 1 UNK 0.0973
110 H54 -3.1730 -3.4160 -2.6290 H 1 UNK 0.0973
111 C43 -1.8250 -1.6440 -1.1450 C.ar 1 UNK 0.1647
112 C44 -0.8820 -2.4960 -0.7790 C.ar 1 UNK -0.2548
113 H55 -1.1840 -3.5000 -0.5270 H 1 UNK 0.1640
114 C45 0.4090 -2.1290 -0.7230 C.ar 1 UNK 0.2003
115 O9 1.3610 -3.0380 -0.3670 O.3 1 UNK -0.2231
116 C46 1.1140 -4.3200 0.2640 C.3 1 UNK -0.0457
117 H56 0.5540 -4.9670 -0.4130 H 1 UNK 0.0968
118 H57 2.0700 -4.7910 0.4930 H 1 UNK 0.0968
119 H58 0.5560 -4.1740 1.1890 H 1 UNK 0.0968
@BOND
1 1 5 1
2 1 2 1
3 1 3 1
4 1 4 1
5 5 8 1
6 5 6 1
7 5 7 1
8 8 9 1
9 8 11 1
10 8 14 1
11 9 10 1
12 11 25 1
13 11 12 1
14 11 13 1
15 14 17 1
16 14 15 1
17 14 16 1
18 17 19 1
19 17 22 1
20 17 18 1
21 19 47 1
22 19 20 1
23 19 21 1
24 22 25 1
25 22 23 1
26 22 24 1
27 25 27 1
28 27 30 1
29 27 28 1
30 27 29 1
31 30 33 1
32 30 31 1
33 30 32 1
34 33 34 ar
35 33 46 ar
36 34 35 ar
37 34 43 ar
38 35 37 ar
39 35 36 1
40 37 39 ar
41 37 38 1
42 39 41 ar
43 39 40 1
44 41 43 ar
45 41 42 1
46 43 44 ar
47 44 46 ar
48 44 45 1
49 46 47 1
50 47 48 1
51 47 55 1
52 48 49 2
53 48 50 1
54 50 51 1
55 51 52 1
56 51 53 1
57 51 54 1
58 55 56 ar
59 55 114 ar
60 56 58 ar
61 56 57 1
62 58 59 1
63 58 111 ar
64 59 60 1
65 59 62 1
66 59 104 1
67 60 68 1
68 60 77 1
69 60 61 1
70 62 65 1
71 62 63 1
72 62 64 1
73 65 68 1
74 65 66 1
75 65 67 1
76 68 70 1
77 70 73 1
78 70 71 1
79 70 72 1
80 73 75 2
81 73 74 1
82 75 77 1
83 75 76 1
84 77 78 1
85 77 85 1
86 78 81 1
87 78 79 1
88 78 80 1
89 81 82 1
90 81 83 1
91 81 84 1
92 85 87 1
93 85 94 1
94 85 86 1
95 87 88 1
96 88 89 1
97 88 93 2
98 89 90 1
99 89 91 1
100 89 92 1
101 94 95 1
102 94 102 1
103 94 104 1
104 95 96 2
105 95 97 1
106 97 98 1
107 98 99 1
108 98 100 1
109 98 101 1
110 102 103 1
111 104 106 1
112 104 105 1
113 106 107 1
114 106 111 1
115 107 108 1
116 107 109 1
117 107 110 1
118 111 112 ar
119 112 114 ar
120 112 113 1
121 114 115 1
122 115 116 1
123 116 117 1
124 116 118 1
125 116 119 1
126 25 26 1
127 68 69 1