@COMMENT
LIGANDBOX_ID = D00142-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00142
NAME = Methotrexate_(JP18/USP/INN)_Otrexup_(TN)_Xatmep_(TN)
MOLECULAR_FORMULA = C20H22N8O5
MOLECULAR_WEIGHT = 454.447
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 9
NUM_OF_CHIRAL_ATOMS = 1
TPSA = 210.5400
HOMO = -1.0659
LUMO = 1.7890
mLOGS = -1.653
mLOGD = -1.051
mLOGPA = -6.271
@MOLECULE
D00142-01
53 55 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 13.6970 -29.3470 -2.1200 C.ar 1 LGD 0.9572
2 N1 14.9400 -29.0480 -1.7110 N.ar 1 LGD -0.8568
3 C2 15.4550 -29.7990 -0.7220 C.ar 1 LGD 0.7106
4 C3 14.7270 -30.8620 -0.1330 C.ar 1 LGD 0.0398
5 C4 13.4090 -31.1100 -0.6340 C.ar 1 LGD 0.6473
6 N2 12.9260 -30.3330 -1.6280 N.ar 1 LGD -0.8290
7 N3 15.2620 -31.6120 0.8620 N.ar 1 LGD -0.5679
8 C5 14.5100 -32.6080 1.3650 C.ar 1 LGD 0.2136
9 C6 13.2190 -32.8570 0.8810 C.ar 1 LGD 0.3586
10 N4 12.6780 -32.1180 -0.1040 N.ar 1 LGD -0.6657
11 N5 13.1680 -28.5850 -3.1270 N.pl3 1 LGD -0.9560
12 N6 16.7290 -29.4990 -0.2980 N.pl3 1 LGD -0.9264
13 C7 15.1280 -33.4600 2.4660 C.3 1 LGD 0.1990
14 N7 15.9680 -34.5420 1.9100 N.pl3 1 LGD -0.7358
15 C8 17.3310 -34.3420 1.6820 C.ar 1 LGD 0.1558
16 C9 15.2320 -35.6410 1.2570 C.3 1 LGD 0.2244
17 C10 18.1760 -33.9470 2.7350 C.ar 1 LGD -0.1830
18 C11 19.5490 -33.7500 2.5160 C.ar 1 LGD -0.0810
19 C12 20.1060 -33.9390 1.2350 C.ar 1 LGD -0.1128
20 C13 19.2570 -34.3290 0.1790 C.ar 1 LGD -0.0810
21 C14 17.8850 -34.5300 0.4020 C.ar 1 LGD -0.1830
22 C15 21.5840 -33.7300 1.0160 C.2 1 LGD 0.6500
23 N8 22.1140 -33.8610 -0.2610 N.am 1 LGD -0.5433
24 O1 22.3310 -33.4490 1.9390 O.2 1 LGD -0.5931
25 C16 23.5450 -33.6580 -0.5450 C.3 1 LGD 0.0110
26 C17 23.9020 -34.4050 -1.8610 C.3 1 LGD -0.0401
27 C18 25.4120 -34.3760 -2.2150 C.3 1 LGD -0.1604
28 C19 26.2810 -34.9700 -1.1010 C.2 1 LGD 0.8931
29 O2 26.2540 -36.3200 -1.0340 O.co2 1 LGD -0.8586
30 C20 23.8770 -32.1510 -0.6200 C.2 1 LGD 0.8893
31 O3 25.1100 -31.8260 -0.1630 O.co2 1 LGD -0.8439
32 O4 23.0820 -31.2990 -0.9720 O.co2 1 LGD -0.8439
33 O5 26.9060 -34.2940 -0.3060 O.co2 1 LGD -0.8586
34 H1 12.6060 -33.6640 1.2810 H 1 LGD 0.0264
35 H2 13.7990 -27.9920 -3.6460 H 1 LGD 0.4383
36 H3 12.3380 -28.9280 -3.5870 H 1 LGD 0.4383
37 H4 17.2870 -28.8880 -0.8770 H 1 LGD 0.4600
38 H5 17.1990 -30.1710 0.2920 H 1 LGD 0.4600
39 H6 15.7270 -32.8190 3.1240 H 1 LGD 0.0572
40 H7 14.3310 -33.8920 3.0850 H 1 LGD 0.0572
41 H8 14.3630 -35.9300 1.8600 H 1 LGD 0.0261
42 H9 14.8870 -35.3320 0.2620 H 1 LGD 0.0261
43 H10 15.8800 -36.5200 1.1520 H 1 LGD 0.0261
44 H11 17.7720 -33.8040 3.7330 H 1 LGD 0.1183
45 H12 20.1780 -33.4510 3.3490 H 1 LGD 0.1489
46 H13 19.6500 -34.4820 -0.8220 H 1 LGD 0.1489
47 H14 17.2520 -34.8240 -0.4300 H 1 LGD 0.1183
48 H15 21.4920 -34.0730 -1.0260 H 1 LGD 0.2742
49 H16 24.1290 -34.0940 0.2760 H 1 LGD 0.1117
50 H17 23.5780 -35.4510 -1.7780 H 1 LGD -0.0006
51 H18 23.3330 -33.9680 -2.6920 H 1 LGD -0.0006
52 H19 25.5810 -34.9460 -3.1370 H 1 LGD 0.0179
53 H20 25.7410 -33.3490 -2.4180 H 1 LGD 0.0179
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 2
9 8 9 1
10 9 10 2
11 5 10 1
12 1 11 1
13 3 12 1
14 8 13 1
15 13 14 1
16 14 15 1
17 14 16 1
18 15 17 ar
19 17 18 ar
20 18 19 ar
21 19 20 ar
22 20 21 ar
23 15 21 ar
24 19 22 1
25 22 23 am
26 22 24 2
27 23 25 1
28 25 26 1
29 26 27 1
30 27 28 1
31 28 29 1
32 25 30 1
33 30 31 1
34 30 32 2
35 28 33 2
36 9 34 1
37 11 35 1
38 11 36 1
39 12 37 1
40 12 38 1
41 13 39 1
42 13 40 1
43 16 41 1
44 16 42 1
45 16 43 1
46 17 44 1
47 18 45 1
48 20 46 1
49 21 47 1
50 23 48 1
51 25 49 1
52 26 50 1
53 26 51 1
54 27 52 1
55 27 53 1