@COMMENT
LIGANDBOX_ID = D00142-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00142
NAME = Methotrexate_(JP18/USP/INN)_Otrexup_(TN)_Xatmep_(TN)
MOLECULAR_FORMULA = C20H22N8O5
MOLECULAR_WEIGHT = 454.447
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 9
NUM_OF_CHIRAL_ATOMS = 1
TPSA = 210.5400
HOMO = -1.0659
LUMO = 1.7890
mLOGS = -1.653
mLOGD = -1.051
mLOGPA = -6.271
@MOLECULE
D00142-02
53 55 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 5.5971 -1.9267 -0.1124 C.ar 1 LGD 0.9492
2 N1 4.6056 -1.9046 -1.0086 N.ar 1 LGD -0.8579
3 C2 3.3605 -2.0227 -0.5284 C.ar 1 LGD 0.7041
4 C3 3.0928 -2.1596 0.8529 C.ar 1 LGD 0.0448
5 C4 4.2201 -2.1636 1.7319 C.ar 1 LGD 0.6453
6 N2 5.4590 -2.0454 1.2137 N.ar 1 LGD -0.8406
7 N3 1.8230 -2.2757 1.3179 N.ar 1 LGD -0.5521
8 C5 1.6590 -2.3905 2.6486 C.ar 1 LGD 0.2084
9 C6 2.7595 -2.3933 3.5175 C.ar 1 LGD 0.3528
10 N4 4.0211 -2.2830 3.0642 N.ar 1 LGD -0.6741
11 N5 6.8638 -1.8021 -0.5901 N.pl3 1 LGD -0.9481
12 N6 2.3395 -1.9936 -1.4417 N.pl3 1 LGD -0.8974
13 C7 0.2332 -2.4998 3.1722 C.3 1 LGD 0.2016
14 N7 -0.3952 -1.1720 3.3237 N.pl3 1 LGD -0.7366
15 C8 -1.1193 -0.5995 2.2760 C.ar 1 LGD 0.1509
16 C9 0.1121 -0.3548 4.4405 C.3 1 LGD 0.2263
17 C10 -2.2192 -1.2777 1.7214 C.ar 1 LGD -0.1867
18 C11 -2.9654 -0.7000 0.6825 C.ar 1 LGD -0.0638
19 C12 -2.6222 0.5674 0.1713 C.ar 1 LGD -0.1037
20 C13 -1.5066 1.2385 0.7141 C.ar 1 LGD -0.0638
21 C14 -0.7674 0.6618 1.7593 C.ar 1 LGD -0.1867
22 C15 -3.4436 1.1828 -0.9340 C.2 1 LGD 0.6676
23 N8 -3.0387 2.3879 -1.4897 N.am 1 LGD -0.5187
24 O1 -4.4609 0.6467 -1.3435 O.2 1 LGD -0.6661
25 C16 -3.6811 2.9855 -2.6734 C.3 1 LGD -0.0162
26 C17 -3.2413 2.2509 -3.9760 C.3 1 LGD -0.0480
27 C18 -1.7187 2.3060 -4.2947 C.3 1 LGD -0.2055
28 C19 -0.8494 1.4882 -3.3245 C.2 1 LGD 0.9387
29 O2 -0.9492 0.2741 -3.3719 O.co2 1 LGD -0.8689
30 C20 -3.4236 4.5056 -2.7464 C.2 1 LGD 0.9389
31 O3 -2.3994 4.9410 -2.2459 O.co2 1 LGD -0.8445
32 O4 -4.2904 5.1830 -3.2717 O.co2 1 LGD -0.8445
33 O5 -0.1028 2.1041 -2.5831 O.co2 1 LGD -0.8689
34 H1 2.6333 -2.4803 4.5959 H 1 LGD 0.0198
35 H2 6.9528 -1.4561 -1.5322 H 1 LGD 0.4313
36 H3 7.5715 -1.5586 0.0846 H 1 LGD 0.4313
37 H4 2.5642 -1.6351 -2.3570 H 1 LGD 0.4672
38 H5 1.4126 -1.8235 -1.0782 H 1 LGD 0.4672
39 H6 -0.3560 -3.1188 2.4840 H 1 LGD 0.0524
40 H7 0.2368 -3.0185 4.1393 H 1 LGD 0.0524
41 H8 0.2246 -0.9694 5.3425 H 1 LGD 0.0230
42 H9 1.0857 0.0807 4.1829 H 1 LGD 0.0230
43 H10 -0.5923 0.4557 4.6667 H 1 LGD 0.0230
44 H11 -2.5096 -2.2508 2.1066 H 1 LGD 0.1146
45 H12 -3.8153 -1.2423 0.2777 H 1 LGD 0.1573
46 H13 -1.2049 2.2111 0.3366 H 1 LGD 0.1573
47 H14 0.0878 1.1983 2.1594 H 1 LGD 0.1146
48 H15 -2.1970 2.8244 -1.1414 H 1 LGD 0.3389
49 H16 -4.7678 2.8701 -2.5730 H 1 LGD 0.0347
50 H17 -3.5621 1.2024 -3.9308 H 1 LGD 0.0140
51 H18 -3.7867 2.6937 -4.8192 H 1 LGD 0.0140
52 H19 -1.5556 1.9099 -5.3052 H 1 LGD 0.0141
53 H20 -1.3727 3.3474 -4.3132 H 1 LGD 0.0141
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 ar
8 7 8 ar
9 8 9 ar
10 9 10 ar
11 5 10 ar
12 1 11 1
13 3 12 1
14 8 13 1
15 13 14 1
16 14 15 1
17 14 16 1
18 15 17 ar
19 17 18 ar
20 18 19 ar
21 19 20 ar
22 20 21 ar
23 15 21 ar
24 19 22 1
25 22 23 am
26 22 24 2
27 23 25 1
28 25 26 1
29 26 27 1
30 27 28 1
31 28 29 1
32 25 30 1
33 30 31 1
34 30 32 2
35 28 33 2
36 9 34 1
37 11 35 1
38 11 36 1
39 12 37 1
40 12 38 1
41 13 39 1
42 13 40 1
43 16 41 1
44 16 42 1
45 16 43 1
46 17 44 1
47 18 45 1
48 20 46 1
49 21 47 1
50 23 48 1
51 25 49 1
52 26 50 1
53 26 51 1
54 27 52 1
55 27 53 1