@COMMENT
LIGANDBOX_ID = D00168-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00168
NAME = Cytarabine_(JP18/USP/INN)_ARA-C_Depocyt_(TN)
MOLECULAR_FORMULA = C9H13N3O5
MOLECULAR_WEIGHT = 243.219
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 6
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 128.6100
HOMO = -9.5392
LUMO = -0.2493
mLOGD = 0.364
mLOGS = -1.069
mLOGPA = -6.277
@MOLECULE
D00168-02
30 31 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.0806 0.4945 -1.1464 C.3 1 LGD 0.2620
2 N1 0.9172 0.8977 0.0246 N.am 1 LGD -0.4163
3 O1 0.1905 -0.9276 -1.3606 O.3 1 LGD -0.3722
4 C2 -1.4519 0.7417 -1.0156 C.3 1 LGD 0.0734
5 C3 2.2430 1.2624 -0.2078 C.2 1 LGD 0.8654
6 C4 0.4323 0.8348 1.3316 C.2 1 LGD 0.0546
7 C5 -0.8325 -1.5715 -0.5822 C.3 1 LGD 0.1417
8 C6 -2.0562 -0.6671 -0.8271 C.3 1 LGD 0.1073
9 O2 -1.9818 1.3426 -2.1979 O.3 1 LGD -0.5838
10 N2 3.0107 1.6099 0.9000 N.2 1 LGD -0.7704
11 O3 2.7251 1.2941 -1.3269 O.2 1 LGD -0.5997
12 C7 1.2292 1.1817 2.4008 C.2 1 LGD -0.4064
13 C8 -1.0073 -3.0416 -1.0422 C.3 1 LGD 0.1503
14 O4 -2.9896 -0.7164 0.2506 O.3 1 LGD -0.6005
15 C9 2.5824 1.5954 2.1471 C.2 1 LGD 0.7580
16 O5 -1.3048 -3.1291 -2.4362 O.3 1 LGD -0.5931
17 N3 3.4184 1.9605 3.1630 N.pl3 1 LGD -0.9107
18 H1 0.4671 1.0252 -2.0243 H 1 LGD 0.1283
19 H2 -1.6700 1.3842 -0.1541 H 1 LGD 0.0563
20 H3 -0.5872 0.4899 1.4302 H 1 LGD 0.1629
21 H4 -0.5593 -1.5577 0.4801 H 1 LGD 0.0589
22 H5 -2.5496 -0.9734 -1.7586 H 1 LGD 0.0929
23 H6 -1.3790 2.0595 -2.4626 H 1 LGD 0.4172
24 H7 0.8488 1.1383 3.4148 H 1 LGD 0.1496
25 H8 -0.0850 -3.5942 -0.8235 H 1 LGD 0.0366
26 H9 -1.8158 -3.5022 -0.4608 H 1 LGD 0.0366
27 H10 -3.7575 -0.1777 -0.0101 H 1 LGD 0.4203
28 H11 -1.3833 -4.0730 -2.6591 H 1 LGD 0.4082
29 H12 3.0001 2.1779 4.0542 H 1 LGD 0.4363
30 H13 4.2653 2.4402 2.8982 H 1 LGD 0.4363
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 am
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 2
11 6 12 2
12 7 13 1
13 8 14 1
14 10 15 2
15 13 16 1
16 15 17 1
17 7 8 1
18 12 15 1
19 1 18 1
20 4 19 1
21 6 20 1
22 7 21 1
23 8 22 1
24 9 23 1
25 12 24 1
26 13 25 1
27 13 26 1
28 14 27 1
29 16 28 1
30 17 29 1
31 17 30 1