@COMMENT
LIGANDBOX_ID = D00168-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00168
NAME = Cytarabine_(JP18/USP/INN)_ARA-C_Depocyt_(TN)
MOLECULAR_FORMULA = C9H13N3O5
MOLECULAR_WEIGHT = 243.219
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 6
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 128.6100
HOMO = -9.5392
LUMO = -0.2493
mLOGD = 0.364
mLOGS = -1.069
mLOGPA = -6.277
@MOLECULE
D00168-03
30 31 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.0115 0.1686 -0.5906 C.3 1 LGD 0.2719
2 N1 0.8122 0.5736 0.5942 N.am 1 LGD -0.4054
3 O1 -1.3532 0.6280 -0.4696 O.3 1 LGD -0.4292
4 C2 -0.1046 -1.3705 -0.8137 C.3 1 LGD 0.0680
5 C3 2.1152 1.0302 0.4159 C.2 1 LGD 0.8637
6 C4 0.2599 0.4910 1.8683 C.2 1 LGD 0.0668
7 C5 -2.2093 -0.2191 -1.2644 C.3 1 LGD 0.1576
8 C6 -1.6159 -1.6170 -0.9889 C.3 1 LGD 0.1128
9 O2 0.4127 -2.1531 0.2651 O.3 1 LGD -0.6001
10 N2 2.8191 1.3895 1.5609 N.2 1 LGD -0.7721
11 O3 2.6348 1.1099 -0.6834 O.2 1 LGD -0.5980
12 C7 0.9932 0.8541 2.9777 C.2 1 LGD -0.4121
13 C8 -2.2485 0.2488 -2.7580 C.3 1 LGD 0.1243
14 O4 -1.9081 -2.5793 -2.0023 O.3 1 LGD -0.5870
15 C9 2.3405 1.3253 2.7891 C.2 1 LGD 0.7601
16 O5 -0.9851 0.1725 -3.4196 O.3 1 LGD -0.6055
17 N3 3.1199 1.7014 3.8450 N.pl3 1 LGD -0.9094
18 H1 0.4592 0.6333 -1.4758 H 1 LGD 0.1283
19 H2 0.4245 -1.6222 -1.7418 H 1 LGD 0.0948
20 H3 -0.7564 0.1172 1.8948 H 1 LGD 0.1718
21 H4 -3.2315 -0.1772 -0.8683 H 1 LGD 0.0929
22 H5 -2.0252 -1.9639 -0.0310 H 1 LGD 0.0538
23 H6 0.9801 -1.5661 0.7962 H 1 LGD 0.4178
24 H7 0.5689 0.7854 3.9727 H 1 LGD 0.1514
25 H8 -2.9768 -0.3699 -3.2969 H 1 LGD 0.0357
26 H9 -2.6180 1.2813 -2.7903 H 1 LGD 0.0357
27 H10 -1.4114 -3.3870 -1.7816 H 1 LGD 0.4220
28 H11 -1.1282 0.4161 -4.3509 H 1 LGD 0.4140
29 H12 2.6594 1.8847 4.7229 H 1 LGD 0.4377
30 H13 3.9599 2.2144 3.6241 H 1 LGD 0.4377
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 am
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 2
11 6 12 2
12 7 13 1
13 8 14 1
14 10 15 2
15 13 16 1
16 15 17 1
17 7 8 1
18 12 15 1
19 1 18 1
20 4 19 1
21 6 20 1
22 7 21 1
23 8 22 1
24 9 23 1
25 12 24 1
26 13 25 1
27 13 26 1
28 14 27 1
29 16 28 1
30 17 29 1
31 17 30 1