@COMMENT
LIGANDBOX_ID = D00168-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00168
NAME = Cytarabine_(JP18/USP/INN)_ARA-C_Depocyt_(TN)
MOLECULAR_FORMULA = C9H13N3O5
MOLECULAR_WEIGHT = 243.219
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 6
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 128.6100
HOMO = -9.5392
LUMO = -0.2493
mLOGD = 0.364
mLOGS = -1.069
mLOGPA = -6.277
@MOLECULE
D00168-04
30 31 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.3584 0.2936 -1.1346 C.3 1 LGD 0.2695
2 N1 1.1636 0.6528 0.0612 N.am 1 LGD -0.3801
3 O1 -1.0298 0.6454 -0.9388 O.3 1 LGD -0.4166
4 C2 0.3359 -1.2283 -1.4804 C.3 1 LGD 0.0963
5 C3 2.4451 1.1682 -0.1082 C.2 1 LGD 0.8731
6 C4 0.6448 0.4530 1.3361 C.2 1 LGD 0.0791
7 C5 -1.8170 -0.2713 -1.7169 C.3 1 LGD 0.1008
8 C6 -1.1511 -1.6324 -1.4057 C.3 1 LGD 0.0797
9 O2 1.1701 -2.0413 -0.6508 O.3 1 LGD -0.5630
10 N2 3.1586 1.4770 1.0464 N.2 1 LGD -0.7717
11 O3 2.9373 1.3462 -1.2090 O.2 1 LGD -0.6131
12 C7 1.3849 0.7703 2.4548 C.2 1 LGD -0.4193
13 C8 -3.3279 -0.1248 -1.3767 C.3 1 LGD 0.1416
14 O4 -1.4844 -2.0798 -0.0868 O.3 1 LGD -0.6138
15 C9 2.7078 1.3084 2.2753 C.2 1 LGD 0.7607
16 O5 -3.5872 -0.2285 0.0245 O.3 1 LGD -0.6108
17 N3 3.4907 1.6460 3.3417 N.pl3 1 LGD -0.9123
18 H1 0.7458 0.8554 -1.9926 H 1 LGD 0.1053
19 H2 0.6654 -1.3289 -2.5223 H 1 LGD 0.0886
20 H3 -0.3539 0.0360 1.3565 H 1 LGD 0.1718
21 H4 -1.6810 -0.0511 -2.7841 H 1 LGD 0.0616
22 H5 -1.4051 -2.3872 -2.1607 H 1 LGD 0.0791
23 H6 0.6399 -2.2599 0.1368 H 1 LGD 0.4243
24 H7 0.9838 0.6159 3.4498 H 1 LGD 0.1482
25 H8 -3.6739 0.8503 -1.7417 H 1 LGD 0.0409
26 H9 -3.8908 -0.8959 -1.9176 H 1 LGD 0.0409
27 H10 -2.2465 -1.5421 0.2037 H 1 LGD 0.4464
28 H11 -4.5258 -0.0088 0.1626 H 1 LGD 0.4228
29 H12 3.0376 1.7552 4.2356 H 1 LGD 0.4350
30 H13 4.3057 2.2056 3.1420 H 1 LGD 0.4350
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 am
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 2
11 6 12 2
12 7 13 1
13 8 14 1
14 10 15 2
15 13 16 1
16 15 17 1
17 7 8 1
18 12 15 1
19 1 18 1
20 4 19 1
21 6 20 1
22 7 21 1
23 8 22 1
24 9 23 1
25 12 24 1
26 13 25 1
27 13 26 1
28 14 27 1
29 16 28 1
30 17 29 1
31 17 30 1