@COMMENT
LIGANDBOX_ID = D00168-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00168
NAME = Cytarabine_(JP18/USP/INN)_ARA-C_Depocyt_(TN)
MOLECULAR_FORMULA = C9H13N3O5
MOLECULAR_WEIGHT = 243.219
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 6
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 128.6100
HOMO = -9.5392
LUMO = -0.2493
mLOGD = 0.364
mLOGS = -1.069
mLOGPA = -6.277
@MOLECULE
D00168-05
30 31 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.3191 0.2775 -0.8703 C.3 1 LGD 0.2809
2 N1 1.1537 0.6604 0.2927 N.am 1 LGD -0.3882
3 O1 -1.0512 0.6745 -0.6657 O.3 1 LGD -0.4153
4 C2 0.2549 -1.2562 -1.1028 C.3 1 LGD 0.0708
5 C3 2.4420 1.1443 0.0866 C.2 1 LGD 0.8671
6 C4 0.6482 0.5188 1.5804 C.2 1 LGD 0.0731
7 C5 -1.8519 -0.1382 -1.5352 C.3 1 LGD 0.1546
8 C6 -1.2517 -1.5372 -1.3073 C.3 1 LGD 0.0645
9 O2 1.0286 -1.5960 -2.2544 O.3 1 LGD -0.5758
10 N2 3.1735 1.4900 1.2195 N.2 1 LGD -0.7719
11 O3 2.9245 1.2656 -1.0258 O.2 1 LGD -0.5976
12 C7 1.4039 0.8762 2.6761 C.2 1 LGD -0.4184
13 C8 -3.3497 -0.0013 -1.1587 C.3 1 LGD 0.1464
14 O4 -1.5285 -2.4351 -2.3856 O.3 1 LGD -0.5918
15 C9 2.7325 1.3859 2.4593 C.2 1 LGD 0.7586
16 O5 -3.5821 -0.3346 0.2107 O.3 1 LGD -0.6035
17 N3 3.5304 1.7603 3.5020 N.pl3 1 LGD -0.9118
18 H1 0.7028 0.7836 -1.7645 H 1 LGD 0.1158
19 H2 0.6193 -1.7971 -0.2202 H 1 LGD 0.0796
20 H3 -0.3562 0.1166 1.6293 H 1 LGD 0.1718
21 H4 -1.6997 0.1696 -2.5783 H 1 LGD 0.0720
22 H5 -1.6507 -1.9495 -0.3718 H 1 LGD 0.0716
23 H6 0.4014 -1.9308 -2.9209 H 1 LGD 0.4186
24 H7 1.0106 0.7740 3.6809 H 1 LGD 0.1484
25 H8 -3.6707 1.0303 -1.3495 H 1 LGD 0.0396
26 H9 -3.9424 -0.6588 -1.8070 H 1 LGD 0.0396
27 H10 -1.3240 -3.3351 -2.0753 H 1 LGD 0.4200
28 H11 -4.5247 -0.1756 0.3934 H 1 LGD 0.4107
29 H12 3.0858 1.9224 4.3923 H 1 LGD 0.4353
30 H13 4.3523 2.2964 3.2690 H 1 LGD 0.4353
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 am
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 2
11 6 12 2
12 7 13 1
13 8 14 1
14 10 15 2
15 13 16 1
16 15 17 1
17 7 8 1
18 12 15 1
19 1 18 1
20 4 19 1
21 6 20 1
22 7 21 1
23 8 22 1
24 9 23 1
25 12 24 1
26 13 25 1
27 13 26 1
28 14 27 1
29 16 28 1
30 17 29 1
31 17 30 1