@COMMENT
LIGANDBOX_ID = D00212-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00212
NAME = Vancomycin_(USP)_Vancocin_(TN)
MOLECULAR_FORMULA = C66H75N9O24Cl2
MOLECULAR_WEIGHT = 1449.271
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 21
NUM_OF_ACCEPTOR = 24
NUM_OF_CHIRAL_ATOMS = 18
TPSA = 530.4900
HOMO = -6.4401
LUMO = -4.6823
mLOGD = -1.807
mLOGPA = -9.078
mLOGS = -0.465
@MOLECULE
D00212-04
177 186 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.6360 -1.0793 6.2968 C.3 1 LGD 0.3644
2 C2 1.5914 -0.6684 7.4525 C.3 1 LGD -0.1229
3 O1 0.7850 -2.4927 5.9870 O.3 1 LGD -0.4352
4 C3 1.6293 -1.6565 8.6565 C.3 1 LGD 0.1116
5 C4 0.7140 -3.4917 7.0401 C.3 1 LGD 0.1309
6 C5 1.7349 -3.1373 8.1555 C.3 1 LGD 0.0980
7 C6 0.4497 -1.4202 9.6403 C.3 1 LGD -0.1228
8 N1 2.8450 -1.3637 9.4400 N.4 1 LGD -0.8205
9 C7 -0.7357 -3.7635 7.5128 C.3 1 LGD -0.1185
10 O2 3.0465 -3.3714 7.6301 O.3 1 LGD -0.6202
11 C8 -2.0899 -0.5158 2.3120 C.ar 1 LGD 0.1623
12 C9 -3.0493 -0.1448 1.3499 C.ar 1 LGD 0.1572
13 C10 -0.7290 -0.1774 2.0934 C.ar 1 LGD 0.0570
14 O3 -2.5581 -1.2428 3.3958 O.3 1 LGD -0.3604
15 C11 -2.6750 0.5596 0.1901 C.ar 1 LGD -0.1472
16 O4 -4.3645 -0.5314 1.5287 O.3 1 LGD -0.2451
17 C12 -0.3742 0.5225 0.9190 C.ar 1 LGD -0.1965
18 O5 0.2670 -0.5605 2.9741 O.3 1 LGD -0.2892
19 C13 -1.8705 -1.5958 4.6104 C.3 1 LGD 0.3688
20 C14 -1.3219 0.8500 -0.0678 C.ar 1 LGD -0.0776
21 C15 -5.1830 -0.8614 0.4704 C.ar 1 LGD 0.0891
22 C16 1.6025 -0.4472 2.6553 C.ar 1 LGD 0.1374
23 C17 -1.5718 -0.3450 5.4971 C.3 1 LGD 0.0970
24 O6 -2.6978 -2.5119 5.3727 O.3 1 LGD -0.4085
25 C18 -0.8360 1.4650 -1.4026 C.3 1 LGD 0.1071
26 C19 -4.8953 -1.9632 -0.3618 C.ar 1 LGD -0.0051
27 C20 -6.2899 -0.0488 0.1902 C.ar 1 LGD -0.1208
28 C21 2.3440 0.6646 3.0923 C.ar 1 LGD -0.0040
29 C22 2.1829 -1.3716 1.7716 C.ar 1 LGD -0.1292
30 C23 -2.8719 0.2889 6.0754 C.3 1 LGD 0.1228
31 C24 -3.9797 -2.0627 5.8978 C.3 1 LGD 0.1270
32 C25 -1.7851 1.2568 -2.5977 C.2 1 LGD 0.6594
33 N2 0.4453 0.8296 -1.7450 N.am 1 LGD -0.5904
34 C26 -5.6857 -2.2094 -1.4974 C.ar 1 LGD -0.1173
35 Cl1 -3.5280 -3.0158 -0.0357 Cl 1 LGD -0.1160
36 C27 -7.0703 -0.2897 -0.9509 C.ar 1 LGD -0.0724
37 C28 3.6560 0.8567 2.6299 C.ar 1 LGD -0.1131
38 Cl2 1.6198 1.8628 4.1501 Cl 1 LGD -0.0868
39 C29 3.4924 -1.1742 1.3037 C.ar 1 LGD -0.0945
40 C30 -3.7891 -0.7709 6.7563 C.3 1 LGD 0.0925
41 O7 -3.5881 0.9728 5.0466 O.3 1 LGD -0.5787
42 N3 -2.4109 0.0249 -2.7270 N.am 1 LGD -0.5803
43 O8 -1.9684 2.1293 -3.4296 O.2 1 LGD -0.5196
44 C31 1.4745 1.4777 -2.4066 C.2 1 LGD 0.6424
45 C32 -6.7589 -1.3576 -1.8228 C.ar 1 LGD -0.0593
46 C33 4.2376 -0.0501 1.7222 C.ar 1 LGD -0.1572
47 O9 -3.2302 -1.1211 8.0200 O.3 1 LGD -0.5947
48 C34 -3.5741 -0.2354 -3.5893 C.3 1 LGD 0.1403
49 C35 2.8264 0.7563 -2.5269 C.3 1 LGD 0.0604
50 O10 1.2980 2.5919 -2.8675 O.2 1 LGD -0.5402
51 C36 -7.4377 -1.4946 -3.1977 C.3 1 LGD 0.1958
52 C37 5.6427 0.2435 1.1851 C.3 1 LGD 0.1930
53 C38 -3.1583 -0.3488 -5.0589 C.ar 1 LGD -0.1775
54 C39 -4.7954 0.7058 -3.3441 C.2 1 LGD 0.6513
55 N4 3.5702 0.9245 -1.2675 N.am 1 LGD -0.5793
56 C40 -6.4974 -0.9061 -4.3014 C.3 1 LGD -0.0067
57 O11 -8.7132 -0.8504 -3.2098 O.3 1 LGD -0.6213
58 C41 5.6314 1.3656 0.1070 C.3 1 LGD 0.0638
59 O12 6.2791 -0.9315 0.6822 O.3 1 LGD -0.5852
60 C42 -3.6477 0.5432 -6.0312 C.ar 1 LGD -0.0582
61 C43 -2.3843 -1.4478 -5.4720 C.ar 1 LGD -0.0711
62 N5 -6.0516 0.4334 -3.8726 N.am 1 LGD -0.5820
63 C44 4.9564 0.9450 -1.2128 C.2 1 LGD 0.6639
64 C45 -7.0845 -0.8091 -5.7264 C.2 1 LGD 0.6562
65 N6 7.0026 1.8318 -0.1562 N.am 1 LGD -0.5746
66 C46 -3.5178 0.2602 -7.4088 C.ar 1 LGD -0.1376
67 C47 -2.1460 -1.6777 -6.8356 C.ar 1 LGD -0.1843
68 O13 5.6016 0.6834 -2.2160 O.2 1 LGD -0.5925
69 N7 -6.1684 -0.6349 -6.7522 N.am 1 LGD -0.5434
70 O14 -8.2789 -0.8671 -5.9680 O.2 1 LGD -0.5996
71 C48 7.5995 2.8503 0.5706 C.2 1 LGD 0.6438
72 C49 -4.2684 1.0955 -8.3958 C.ar 1 LGD -0.1892
73 C50 -2.7353 -0.8509 -7.8040 C.ar 1 LGD 0.1967
74 C51 -6.5025 -0.3016 -8.1465 C.3 1 LGD -0.0016
75 C52 8.9639 3.3855 0.1085 C.3 1 LGD 0.0384
76 O15 7.0337 3.3200 1.5422 O.2 1 LGD -0.5405
77 C53 -5.6540 0.8724 -8.7065 C.ar 1 LGD 0.0657
78 C54 -3.5915 2.1685 -9.0300 C.ar 1 LGD 0.1822
79 C55 -6.3894 -1.5606 -9.0276 C.2 1 LGD 0.9379
80 C56 10.0445 2.2733 0.0569 C.3 1 LGD -0.1017
81 N8 8.8603 4.0016 -1.2345 N.4 1 LGD -0.7417
82 C57 -6.2926 1.7241 -9.6296 C.ar 1 LGD -0.1925
83 C58 -4.2517 2.9978 -9.9457 C.ar 1 LGD -0.2841
84 O16 -2.2773 2.4130 -8.7552 O.3 1 LGD -0.5094
85 C59 -5.6007 2.7768 -10.2429 C.ar 1 LGD 0.1740
86 O17 -6.2404 3.5823 -11.1381 O.3 1 LGD -0.4943
87 O18 -4.7203 1.7316 -2.6919 O.2 1 LGD -0.5998
88 O19 -2.5743 -1.1556 -9.1234 O.3 1 LGD -0.4946
89 O20 -7.2661 -2.3984 -8.9065 O.co2 1 LGD -0.8037
90 O21 -5.4368 -1.6446 -9.7848 O.co2 1 LGD -0.8037
91 C60 7.9491 5.1654 -1.2294 C.3 1 LGD 0.0845
92 C61 10.2707 1.5484 1.4151 C.3 1 LGD -0.0553
93 C62 10.6815 2.5325 2.5402 C.3 1 LGD -0.0979
94 C63 11.3291 0.4300 1.2593 C.3 1 LGD -0.0979
95 C64 2.6758 -0.7557 -2.8530 C.3 1 LGD -0.1754
96 C65 1.7933 -1.0014 -4.0792 C.2 1 LGD 0.6565
97 N9 2.2312 -0.5989 -5.3214 N.am 1 LGD -0.6819
98 O22 0.7085 -1.5472 -3.9999 O.2 1 LGD -0.5759
99 C66 -5.0410 -1.9485 4.7680 C.3 1 LGD 0.1119
100 O23 -6.3453 -1.8087 5.3258 O.3 1 LGD -0.6187
101 O24 -0.7333 -0.7473 6.6166 O.3 1 LGD -0.4598
102 H1 0.9287 -0.5012 5.4148 H 1 LGD 0.1115
103 H2 2.6001 -0.5856 7.0272 H 1 LGD 0.0724
104 H3 1.3315 0.3397 7.8006 H 1 LGD 0.0724
105 H4 1.0482 -4.4452 6.6108 H 1 LGD 0.1076
106 H5 1.5748 -3.8109 9.0072 H 1 LGD 0.1012
107 H6 0.4046 -2.2114 10.3996 H 1 LGD 0.0817
108 H7 0.5678 -0.4628 10.1643 H 1 LGD 0.0817
109 H8 -0.5174 -1.3800 9.1334 H 1 LGD 0.0817
110 H9 2.8716 -1.9578 10.2561 H 1 LGD 0.4563
111 H10 3.6547 -1.5625 8.8684 H 1 LGD 0.4563
112 H11 -1.2844 -2.8579 7.7675 H 1 LGD 0.0673
113 H12 -1.2958 -4.2847 6.7272 H 1 LGD 0.0673
114 H13 -0.7356 -4.4125 8.3973 H 1 LGD 0.0673
115 H14 2.9856 -3.2724 6.6626 H 1 LGD 0.4449
116 H15 -3.4419 0.8501 -0.5195 H 1 LGD 0.1924
117 H16 0.6608 0.7993 0.7494 H 1 LGD 0.1265
118 H17 -0.9427 -2.1106 4.3444 H 1 LGD 0.0978
119 H18 -1.0509 0.4200 4.9087 H 1 LGD 0.0800
120 H19 -0.6996 2.5452 -1.2635 H 1 LGD 0.1162
121 H20 -6.5128 0.8015 0.8283 H 1 LGD 0.1553
122 H21 1.6021 -2.2178 1.4156 H 1 LGD 0.1761
123 H22 -2.5802 1.0271 6.8338 H 1 LGD 0.0468
124 H23 -4.3475 -2.8460 6.5732 H 1 LGD 0.1038
125 H24 0.6060 -0.1159 -1.4300 H 1 LGD 0.3185
126 H25 -5.4264 -3.0298 -2.1610 H 1 LGD 0.1572
127 H26 -7.8790 0.3972 -1.1827 H 1 LGD 0.1720
128 H27 4.2135 1.7323 2.9526 H 1 LGD 0.1557
129 H28 3.9081 -1.8822 0.5922 H 1 LGD 0.1661
130 H29 -4.7749 -0.3213 6.9307 H 1 LGD 0.1064
131 H30 -4.3746 1.3762 5.4538 H 1 LGD 0.4284
132 H31 -2.1332 -0.7032 -2.0854 H 1 LGD 0.3079
133 H32 -2.2710 -1.2175 7.8764 H 1 LGD 0.4015
134 H33 -3.9182 -1.2325 -3.2949 H 1 LGD 0.0572
135 H34 3.3731 1.2434 -3.3451 H 1 LGD 0.1034
136 H35 -7.5813 -2.5619 -3.4094 H 1 LGD 0.0632
137 H36 6.2330 0.6158 2.0324 H 1 LGD 0.0527
138 H37 3.0548 1.1106 -0.4192 H 1 LGD 0.3214
139 H38 -5.6398 -1.5811 -4.3888 H 1 LGD 0.0744
140 H39 -9.0168 -0.8504 -4.1378 H 1 LGD 0.4630
141 H40 5.0418 2.2060 0.4952 H 1 LGD 0.0977
142 H41 6.3581 -1.5562 1.4242 H 1 LGD 0.4230
143 H42 -4.2416 1.4051 -5.7414 H 1 LGD 0.1537
144 H43 -1.9920 -2.1444 -4.7361 H 1 LGD 0.1310
145 H44 -6.7562 1.1479 -3.7608 H 1 LGD 0.3403
146 H45 7.5053 1.4208 -0.9295 H 1 LGD 0.3387
147 H46 -1.5554 -2.5363 -7.1426 H 1 LGD 0.1472
148 H47 -5.1906 -0.6814 -6.5096 H 1 LGD 0.3122
149 H48 -7.5555 0.0041 -8.1876 H 1 LGD 0.0842
150 H49 9.2700 4.1516 0.8234 H 1 LGD 0.1403
151 H50 9.7681 1.5333 -0.7057 H 1 LGD 0.0656
152 H51 10.9927 2.7176 -0.2733 H 1 LGD 0.0656
153 H52 9.7793 4.3056 -1.5280 H 1 LGD 0.4575
154 H53 -7.3355 1.5588 -9.8855 H 1 LGD 0.1569
155 H54 -3.7131 3.8120 -10.4226 H 1 LGD 0.1332
156 H55 -1.9831 1.7549 -8.1013 H 1 LGD 0.4298
157 H56 -5.6025 4.2380 -11.4682 H 1 LGD 0.4182
158 H57 -3.2994 -0.7314 -9.6187 H 1 LGD 0.4853
159 H58 8.3064 5.9101 -0.5156 H 1 LGD 0.1118
160 H59 7.9152 5.6084 -2.2267 H 1 LGD 0.1118
161 H60 6.9441 4.8466 -0.9453 H 1 LGD 0.1118
162 H61 9.3311 1.0664 1.7156 H 1 LGD 0.0568
163 H62 10.8918 1.9907 3.4711 H 1 LGD 0.0497
164 H63 11.5828 3.0936 2.2624 H 1 LGD 0.0497
165 H64 9.8802 3.2513 2.7519 H 1 LGD 0.0497
166 H65 12.3022 0.8464 0.9688 H 1 LGD 0.0497
167 H66 11.4594 -0.1177 2.2014 H 1 LGD 0.0497
168 H67 11.0230 -0.2918 0.4914 H 1 LGD 0.0497
169 H68 3.6643 -1.1919 -3.0444 H 1 LGD 0.0739
170 H69 2.2503 -1.2923 -1.9948 H 1 LGD 0.0739
171 H70 3.1298 -0.1511 -5.4224 H 1 LGD 0.3260
172 H71 1.6460 -0.7579 -6.1283 H 1 LGD 0.3260
173 H72 -4.8354 -1.0857 4.1272 H 1 LGD 0.0570
174 H73 -4.9983 -2.8510 4.1450 H 1 LGD 0.0570
175 H74 -6.9797 -1.8238 4.5876 H 1 LGD 0.4240
176 H75 2.8513 -0.3944 9.7219 H 1 LGD 0.4563
177 H76 8.5247 3.3150 -1.8969 H 1 LGD 0.4575
@BOND
1 1 2 1
2 1 3 1
3 2 4 1
4 3 5 1
5 4 6 1
6 4 7 1
7 4 8 1
8 5 9 1
9 6 10 1
10 5 6 1
11 11 12 ar
12 11 13 ar
13 11 14 1
14 12 15 ar
15 12 16 1
16 13 17 ar
17 13 18 1
18 14 19 1
19 15 20 ar
20 16 21 1
21 18 22 1
22 19 23 1
23 19 24 1
24 20 25 1
25 21 26 ar
26 21 27 ar
27 22 28 ar
28 22 29 ar
29 23 30 1
30 24 31 1
31 25 32 1
32 25 33 1
33 26 34 ar
34 26 35 1
35 27 36 ar
36 28 37 ar
37 28 38 1
38 29 39 ar
39 30 40 1
40 30 41 1
41 32 42 am
42 32 43 2
43 33 44 am
44 34 45 ar
45 37 46 ar
46 40 47 1
47 42 48 1
48 44 49 1
49 44 50 2
50 45 51 1
51 46 52 1
52 48 53 1
53 48 54 1
54 49 55 1
55 51 56 1
56 51 57 1
57 52 58 1
58 52 59 1
59 53 60 ar
60 53 61 ar
61 54 62 am
62 55 63 am
63 56 64 1
64 58 65 1
65 60 66 ar
66 61 67 ar
67 63 68 2
68 64 69 am
69 64 70 2
70 65 71 am
71 66 72 1
72 66 73 ar
73 69 74 1
74 71 75 1
75 71 76 2
76 72 77 ar
77 72 78 ar
78 74 79 1
79 75 80 1
80 75 81 1
81 77 82 ar
82 78 83 ar
83 78 84 1
84 82 85 ar
85 85 86 1
86 17 20 ar
87 31 40 1
88 36 45 ar
89 39 46 ar
90 56 62 1
91 58 63 1
92 67 73 ar
93 74 77 1
94 83 85 ar
95 54 87 2
96 73 88 1
97 79 89 1
98 79 90 2
99 81 91 1
100 80 92 1
101 92 93 1
102 92 94 1
103 49 95 1
104 95 96 1
105 96 97 am
106 96 98 2
107 31 99 1
108 99 100 1
109 23 101 1
110 1 101 1
111 1 102 1
112 2 103 1
113 2 104 1
114 5 105 1
115 6 106 1
116 7 107 1
117 7 108 1
118 7 109 1
119 8 110 1
120 8 111 1
121 9 112 1
122 9 113 1
123 9 114 1
124 10 115 1
125 15 116 1
126 17 117 1
127 19 118 1
128 23 119 1
129 25 120 1
130 27 121 1
131 29 122 1
132 30 123 1
133 31 124 1
134 33 125 1
135 34 126 1
136 36 127 1
137 37 128 1
138 39 129 1
139 40 130 1
140 41 131 1
141 42 132 1
142 47 133 1
143 48 134 1
144 49 135 1
145 51 136 1
146 52 137 1
147 55 138 1
148 56 139 1
149 57 140 1
150 58 141 1
151 59 142 1
152 60 143 1
153 61 144 1
154 62 145 1
155 65 146 1
156 67 147 1
157 69 148 1
158 74 149 1
159 75 150 1
160 80 151 1
161 80 152 1
162 81 153 1
163 82 154 1
164 83 155 1
165 84 156 1
166 86 157 1
167 88 158 1
168 91 159 1
169 91 160 1
170 91 161 1
171 92 162 1
172 93 163 1
173 93 164 1
174 93 165 1
175 94 166 1
176 94 167 1
177 94 168 1
178 95 169 1
179 95 170 1
180 97 171 1
181 97 172 1
182 99 173 1
183 99 174 1
184 100 175 1
185 8 176 1
186 81 177 1