@COMMENT
LIGANDBOX_ID = D00926-06
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00926
NAME = Vancomycin_hydrochloride_(JP18/USP)_Vancoled_(TN)_Vancocin_(TN)
MOLECULAR_FORMULA = C66H75N9O24Cl2
MOLECULAR_WEIGHT = 1449.271
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 21
NUM_OF_ACCEPTOR = 24
NUM_OF_CHIRAL_ATOMS = 18
TPSA = 530.4900
HOMO = -6.5613
LUMO = -5.4826
mLOGS = -1.290
mLOGD = -1.898
mLOGPA = -8.186
@MOLECULE
D00926-06
177 186 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 2.2653 6.1892 3.0133 C.3 1 LGD 0.3416
2 C2 3.3013 5.5593 3.9668 C.3 1 LGD -0.1312
3 O1 2.9521 6.5930 1.8113 O.3 1 LGD -0.4177
4 C3 4.4582 6.5431 4.2901 C.3 1 LGD 0.1031
5 C4 3.9271 7.6487 1.9649 C.3 1 LGD 0.1508
6 C5 5.0250 7.1761 2.9738 C.3 1 LGD 0.0954
7 C6 5.5762 5.8093 5.0749 C.3 1 LGD -0.1297
8 N1 3.9398 7.6052 5.1721 N.4 1 LGD -0.8204
9 C7 3.2070 8.9866 2.2980 C.3 1 LGD -0.1238
10 O2 5.9290 8.2449 3.2683 O.3 1 LGD -0.6008
11 C8 0.1010 2.0542 0.5108 C.ar 1 LGD 0.0998
12 C9 0.9205 1.0044 0.9658 C.ar 1 LGD 0.1650
13 C10 -0.9881 1.7617 -0.3395 C.ar 1 LGD 0.1025
14 O3 0.4218 3.3485 0.8743 O.3 1 LGD -0.2942
15 C11 0.5935 -0.3329 0.6711 C.ar 1 LGD -0.1769
16 O4 2.0812 1.2890 1.6583 O.3 1 LGD -0.2485
17 C12 -1.2736 0.4190 -0.6683 C.ar 1 LGD -0.1903
18 O5 -1.7200 2.7882 -0.9104 O.3 1 LGD -0.2716
19 C13 -0.5500 4.2721 1.4154 C.3 1 LGD 0.3597
20 C14 -0.4952 -0.6468 -0.1669 C.ar 1 LGD -0.0544
21 C15 3.2540 0.6218 1.3664 C.ar 1 LGD 0.0869
22 C16 -2.9430 2.5904 -1.5105 C.ar 1 LGD 0.1374
23 C17 0.2014 5.5695 1.8210 C.3 1 LGD 0.0878
24 O6 -1.1407 3.6899 2.6075 O.3 1 LGD -0.4411
25 C18 -0.8005 -2.1273 -0.5258 C.3 1 LGD 0.1009
26 C19 3.8624 0.7348 0.0979 C.ar 1 LGD -0.0079
27 C20 3.8069 -0.2404 2.3246 C.ar 1 LGD -0.1305
28 C21 -3.0395 2.1859 -2.8552 C.ar 1 LGD 0.0202
29 C22 -4.1046 2.7420 -0.7461 C.ar 1 LGD -0.1434
30 C23 -0.7523 6.5525 2.5692 C.3 1 LGD 0.0838
31 C24 -2.1354 4.4850 3.3104 C.3 1 LGD 0.1208
32 C25 0.4493 -2.9333 -0.9300 C.2 1 LGD 0.6582
33 N2 -1.7657 -2.2486 -1.6310 N.am 1 LGD -0.5730
34 C26 4.9817 -0.0543 -0.2182 C.ar 1 LGD -0.1174
35 Cl1 3.2199 1.8159 -1.1276 Cl 1 LGD -0.1037
36 C27 4.9207 -1.0332 2.0028 C.ar 1 LGD -0.0762
37 C28 -4.2966 1.8756 -3.4037 C.ar 1 LGD -0.0805
38 Cl2 -1.5971 2.0001 -3.8381 Cl 1 LGD -0.0340
39 C29 -5.3590 2.4656 -1.2999 C.ar 1 LGD -0.1543
40 C30 -1.5015 5.8460 3.7375 C.3 1 LGD 0.1023
41 O7 -1.6895 7.1163 1.6507 O.3 1 LGD -0.5751
42 N3 1.5748 -2.2449 -1.3593 N.am 1 LGD -0.5778
43 O8 0.4582 -4.1523 -0.8931 O.2 1 LGD -0.5165
44 C31 -3.1401 -2.1693 -1.4531 C.2 1 LGD 0.6563
45 C32 5.5035 -0.9680 0.7168 C.ar 1 LGD -0.0610
46 C33 -5.4683 1.9938 -2.6209 C.ar 1 LGD -0.1407
47 O9 -0.5892 5.6098 4.8098 O.3 1 LGD -0.6027
48 C34 2.9320 -2.8125 -1.3816 C.3 1 LGD 0.1417
49 C35 -4.0696 -2.0702 -2.6871 C.3 1 LGD 0.0692
50 O10 -3.5859 -2.1211 -0.3185 O.2 1 LGD -0.6358
51 C36 6.5667 -1.9853 0.2621 C.3 1 LGD 0.1945
52 C37 -6.8468 1.5633 -3.1438 C.3 1 LGD 0.1956
53 C38 3.1112 -3.8085 -2.5344 C.ar 1 LGD -0.1821
54 C39 3.4192 -3.3472 0.0001 C.2 1 LGD 0.6524
55 N4 -5.0695 -1.0255 -2.4233 N.am 1 LGD -0.5972
56 C40 5.8784 -3.1270 -0.5550 C.3 1 LGD -0.0057
57 O11 7.2876 -2.5136 1.3770 O.3 1 LGD -0.6246
58 C41 -7.2801 0.1528 -2.6371 C.3 1 LGD 0.0656
59 O12 -6.9002 1.6030 -4.5680 O.3 1 LGD -0.5675
60 C42 3.4504 -5.1550 -2.2979 C.ar 1 LGD -0.0586
61 C43 3.0726 -3.3421 -3.8606 C.ar 1 LGD -0.0803
62 N5 4.7530 -3.6559 0.2384 N.am 1 LGD -0.5815
63 C44 -6.3054 -0.9631 -3.0536 C.2 1 LGD 0.6506
64 C45 6.7829 -4.2981 -0.9957 C.2 1 LGD 0.6553
65 N6 -7.3849 0.1658 -1.1684 N.am 1 LGD -0.6050
66 C46 3.9060 -5.9886 -3.3436 C.ar 1 LGD -0.0949
67 C47 3.4117 -4.1929 -4.9244 C.ar 1 LGD -0.1757
68 O13 -6.6092 -1.8062 -3.8803 O.2 1 LGD -0.5383
69 N7 6.3091 -5.0776 -2.0405 N.am 1 LGD -0.5391
70 O14 7.8532 -4.5539 -0.4690 O.2 1 LGD -0.6064
71 C48 -8.0806 -0.7996 -0.4583 C.2 1 LGD 0.6378
72 C49 4.4824 -7.3287 -3.0093 C.ar 1 LGD -0.1296
73 C50 3.8557 -5.5000 -4.6712 C.ar 1 LGD 0.2106
74 C51 6.8879 -6.3591 -2.4779 C.3 1 LGD -0.0019
75 C52 -7.8414 -0.9071 1.0551 C.3 1 LGD 0.0322
76 O15 -8.8615 -1.5368 -1.0329 O.2 1 LGD -0.4881
77 C53 5.8394 -7.5008 -2.5668 C.ar 1 LGD 0.0617
78 C54 3.6483 -8.4733 -3.1091 C.ar 1 LGD 0.1810
79 C55 7.6375 -6.1671 -3.8102 C.2 1 LGD 0.9372
80 C56 -6.3742 -1.3197 1.3437 C.3 1 LGD -0.1108
81 N8 -8.1274 0.3727 1.7440 N.4 1 LGD -0.7411
82 C57 6.2962 -8.7953 -2.2493 C.ar 1 LGD -0.1929
83 C58 4.1311 -9.7489 -2.7867 C.ar 1 LGD -0.3469
84 O16 2.3524 -8.3556 -3.5224 O.3 1 LGD -0.4934
85 C59 5.4523 -9.9080 -2.3560 C.ar 1 LGD 0.1795
86 O17 5.9214 -11.1507 -2.0487 O.3 1 LGD -0.4935
87 O18 2.6652 -3.5360 0.9380 O.2 1 LGD -0.6078
88 O19 4.2705 -6.2728 -5.7162 O.3 1 LGD -0.4864
89 O20 8.7175 -5.6049 -3.7582 O.co2 1 LGD -0.8013
90 O21 7.1098 -6.5831 -4.8280 O.co2 1 LGD -0.8013
91 C60 -9.5532 0.7413 1.6330 C.3 1 LGD 0.0823
92 C61 -6.0931 -1.6224 2.8424 C.3 1 LGD -0.0650
93 C62 -4.5836 -1.8804 3.0688 C.3 1 LGD -0.0948
94 C63 -6.9321 -2.8207 3.3542 C.3 1 LGD -0.0948
95 C64 -3.3295 -1.7115 -4.0103 C.3 1 LGD -0.1851
96 C65 -2.4688 -2.8609 -4.5358 C.2 1 LGD 0.6516
97 N9 -3.0797 -4.0021 -5.0054 N.am 1 LGD -0.6807
98 O22 -1.2533 -2.8057 -4.5558 O.2 1 LGD -0.5825
99 C66 -3.4339 4.5891 2.4667 C.3 1 LGD 0.1134
100 O23 -4.4102 5.3916 3.1261 O.3 1 LGD -0.5915
101 O24 1.2969 5.1777 2.6860 O.3 1 LGD -0.3702
102 H1 1.7769 7.0437 3.4915 H 1 LGD 0.0201
103 H2 2.8038 5.2416 4.8923 H 1 LGD 0.1077
104 H3 3.7068 4.6528 3.4977 H 1 LGD 0.1077
105 H4 4.4209 7.7921 0.9955 H 1 LGD 0.1266
106 H5 5.5827 6.3850 2.4559 H 1 LGD 0.1006
107 H6 6.0219 5.0116 4.4667 H 1 LGD 0.0799
108 H7 6.3782 6.4994 5.3662 H 1 LGD 0.0799
109 H8 5.1785 5.3515 5.9898 H 1 LGD 0.0799
110 H9 4.6714 8.2854 5.3263 H 1 LGD 0.4578
111 H10 3.1556 8.0623 4.7325 H 1 LGD 0.4578
112 H11 3.9166 9.8228 2.2726 H 1 LGD 0.0520
113 H12 2.4286 9.1925 1.5524 H 1 LGD 0.0520
114 H13 2.7315 8.9810 3.2839 H 1 LGD 0.0520
115 H14 6.8184 7.8595 3.3611 H 1 LGD 0.4397
116 H15 1.2119 -1.1306 1.0732 H 1 LGD 0.1846
117 H16 -2.1028 0.2098 -1.3301 H 1 LGD 0.1341
118 H17 -1.3212 4.4928 0.6717 H 1 LGD 0.0616
119 H18 0.5931 6.0520 0.9164 H 1 LGD 0.0963
120 H19 -1.2060 -2.6169 0.3689 H 1 LGD 0.1146
121 H20 3.3399 -0.3359 3.3007 H 1 LGD 0.1506
122 H21 -4.0322 3.0497 0.2871 H 1 LGD 0.1404
123 H22 -0.1677 7.3782 2.9910 H 1 LGD 0.0798
124 H23 -2.4108 3.9516 4.2293 H 1 LGD 0.1091
125 H24 -1.4067 -2.3307 -2.5726 H 1 LGD 0.3587
126 H25 5.4114 0.0035 -1.2146 H 1 LGD 0.1600
127 H26 5.2871 -1.7422 2.7395 H 1 LGD 0.1703
128 H27 -4.3489 1.5120 -4.4261 H 1 LGD 0.1805
129 H28 -6.2460 2.5861 -0.6847 H 1 LGD 0.1082
130 H29 -2.2936 6.5152 4.0974 H 1 LGD 0.1184
131 H30 -1.9134 6.4381 0.9910 H 1 LGD 0.4054
132 H31 1.4843 -1.2481 -1.4914 H 1 LGD 0.3079
133 H32 0.0661 4.9693 4.4780 H 1 LGD 0.4222
134 H33 3.5844 -1.9626 -1.6087 H 1 LGD 0.0549
135 H34 -4.5706 -3.0403 -2.7991 H 1 LGD 0.1053
136 H35 7.2742 -1.4737 -0.4031 H 1 LGD 0.0621
137 H36 -7.5805 2.2828 -2.7579 H 1 LGD 0.0463
138 H37 -4.8570 -0.3243 -1.7283 H 1 LGD 0.3070
139 H38 5.5127 -2.6819 -1.4860 H 1 LGD 0.0772
140 H39 7.8408 -3.2405 1.0322 H 1 LGD 0.4639
141 H40 -8.2607 -0.0836 -3.0703 H 1 LGD 0.1380
142 H41 -6.7564 2.5277 -4.8358 H 1 LGD 0.4309
143 H42 3.4784 -5.5493 -1.2867 H 1 LGD 0.1457
144 H43 2.8072 -2.3089 -4.0666 H 1 LGD 0.1183
145 H44 4.9673 -4.1002 1.1194 H 1 LGD 0.3383
146 H45 -6.7878 0.7973 -0.6562 H 1 LGD 0.2996
147 H46 3.3858 -3.8184 -5.9438 H 1 LGD 0.1477
148 H47 5.4616 -4.7738 -2.4957 H 1 LGD 0.3163
149 H48 7.6466 -6.6661 -1.7473 H 1 LGD 0.0850
150 H49 -8.5167 -1.6767 1.4331 H 1 LGD 0.1461
151 H50 -6.1332 -2.2112 0.7494 H 1 LGD 0.0975
152 H51 -5.6976 -0.5261 0.9998 H 1 LGD 0.0975
153 H52 -7.8884 0.2741 2.7222 H 1 LGD 0.4502
154 H53 7.3240 -8.9427 -1.9292 H 1 LGD 0.1577
155 H54 3.4798 -10.6146 -2.8712 H 1 LGD 0.1205
156 H55 1.9530 -9.2420 -3.5286 H 1 LGD 0.4157
157 H56 5.2055 -11.7916 -2.1984 H 1 LGD 0.4171
158 H57 4.8050 -7.0029 -5.3543 H 1 LGD 0.4755
159 H58 -9.8197 0.8735 0.5825 H 1 LGD 0.1091
160 H59 -10.1714 -0.0472 2.0665 H 1 LGD 0.1091
161 H60 -9.7318 1.6755 2.1691 H 1 LGD 0.1091
162 H61 -6.3666 -0.7403 3.4354 H 1 LGD 0.0035
163 H62 -4.2448 -2.7586 2.5041 H 1 LGD 0.0536
164 H63 -3.9873 -1.0171 2.7467 H 1 LGD 0.0536
165 H64 -4.3733 -2.0558 4.1315 H 1 LGD 0.0536
166 H65 -8.0063 -2.6048 3.3035 H 1 LGD 0.0536
167 H66 -6.7343 -3.7214 2.7586 H 1 LGD 0.0536
168 H67 -6.6893 -3.0462 4.4004 H 1 LGD 0.0536
169 H68 -4.0601 -1.4674 -4.7917 H 1 LGD 0.0828
170 H69 -2.7053 -0.8200 -3.8714 H 1 LGD 0.0828
171 H70 -4.0866 -4.0729 -5.0095 H 1 LGD 0.3293
172 H71 -2.5124 -4.7618 -5.3515 H 1 LGD 0.3293
173 H72 -3.2222 5.0040 1.4747 H 1 LGD 0.0192
174 H73 -3.8330 3.5768 2.3358 H 1 LGD 0.0192
175 H74 -5.1682 5.4902 2.5230 H 1 LGD 0.4092
176 H75 3.6508 7.2096 6.0551 H 1 LGD 0.4578
177 H76 -7.5558 1.1067 1.3497 H 1 LGD 0.4502
@BOND
1 1 2 1
2 1 3 1
3 2 4 1
4 3 5 1
5 4 6 1
6 4 7 1
7 4 8 1
8 5 9 1
9 6 10 1
10 5 6 1
11 11 12 ar
12 11 13 ar
13 11 14 1
14 12 15 ar
15 12 16 1
16 13 17 ar
17 13 18 1
18 14 19 1
19 15 20 ar
20 16 21 1
21 18 22 1
22 19 23 1
23 19 24 1
24 20 25 1
25 21 26 ar
26 21 27 ar
27 22 28 ar
28 22 29 ar
29 23 30 1
30 24 31 1
31 25 32 1
32 25 33 1
33 26 34 ar
34 26 35 1
35 27 36 ar
36 28 37 ar
37 28 38 1
38 29 39 ar
39 30 40 1
40 30 41 1
41 32 42 am
42 32 43 2
43 33 44 am
44 34 45 ar
45 37 46 ar
46 40 47 1
47 42 48 1
48 44 49 1
49 44 50 2
50 45 51 1
51 46 52 1
52 48 53 1
53 48 54 1
54 49 55 1
55 51 56 1
56 51 57 1
57 52 58 1
58 52 59 1
59 53 60 ar
60 53 61 ar
61 54 62 am
62 55 63 am
63 56 64 1
64 58 65 1
65 60 66 ar
66 61 67 ar
67 63 68 2
68 64 69 am
69 64 70 2
70 65 71 am
71 66 72 1
72 66 73 ar
73 69 74 1
74 71 75 1
75 71 76 2
76 72 77 ar
77 72 78 ar
78 74 79 1
79 75 80 1
80 75 81 1
81 77 82 ar
82 78 83 ar
83 78 84 1
84 82 85 ar
85 85 86 1
86 17 20 ar
87 31 40 1
88 36 45 ar
89 39 46 ar
90 56 62 1
91 58 63 1
92 67 73 ar
93 74 77 1
94 83 85 ar
95 54 87 2
96 73 88 1
97 79 89 1
98 79 90 2
99 81 91 1
100 80 92 1
101 92 93 1
102 92 94 1
103 49 95 1
104 95 96 1
105 96 97 am
106 96 98 2
107 31 99 1
108 99 100 1
109 23 101 1
110 1 101 1
111 1 102 1
112 2 103 1
113 2 104 1
114 5 105 1
115 6 106 1
116 7 107 1
117 7 108 1
118 7 109 1
119 8 110 1
120 8 111 1
121 9 112 1
122 9 113 1
123 9 114 1
124 10 115 1
125 15 116 1
126 17 117 1
127 19 118 1
128 23 119 1
129 25 120 1
130 27 121 1
131 29 122 1
132 30 123 1
133 31 124 1
134 33 125 1
135 34 126 1
136 36 127 1
137 37 128 1
138 39 129 1
139 40 130 1
140 41 131 1
141 42 132 1
142 47 133 1
143 48 134 1
144 49 135 1
145 51 136 1
146 52 137 1
147 55 138 1
148 56 139 1
149 57 140 1
150 58 141 1
151 59 142 1
152 60 143 1
153 61 144 1
154 62 145 1
155 65 146 1
156 67 147 1
157 69 148 1
158 74 149 1
159 75 150 1
160 80 151 1
161 80 152 1
162 81 153 1
163 82 154 1
164 83 155 1
165 84 156 1
166 86 157 1
167 88 158 1
168 91 159 1
169 91 160 1
170 91 161 1
171 92 162 1
172 93 163 1
173 93 164 1
174 93 165 1
175 94 166 1
176 94 167 1
177 94 168 1
178 95 169 1
179 95 170 1
180 97 171 1
181 97 172 1
182 99 173 1
183 99 174 1
184 100 175 1
185 8 176 1
186 81 177 1