@COMMENT
LIGANDBOX_ID = D00926-09
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00926
NAME = Vancomycin_hydrochloride_(JP18/USP)_Vancoled_(TN)_Vancocin_(TN)
MOLECULAR_FORMULA = C66H75N9O24Cl2
MOLECULAR_WEIGHT = 1449.271
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 21
NUM_OF_ACCEPTOR = 24
NUM_OF_CHIRAL_ATOMS = 18
TPSA = 530.4900
HOMO = -6.5613
LUMO = -5.4826
mLOGS = -1.290
mLOGD = -1.898
mLOGPA = -8.186
@MOLECULE
D00926-09
177 186 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.5072 -0.4981 5.9282 C.3 1 LGD 0.3538
2 C2 2.5736 -1.1476 6.8360 C.3 1 LGD -0.1401
3 O1 2.1520 -0.1173 4.6953 O.3 1 LGD -0.4244
4 C3 3.7605 -0.1799 7.1049 C.3 1 LGD 0.1008
5 C4 3.1621 0.9088 4.7914 C.3 1 LGD 0.1564
6 C5 4.2906 0.4152 5.7537 C.3 1 LGD 0.0819
7 C6 4.8903 -0.9208 7.8663 C.3 1 LGD -0.1360
8 N1 3.2861 0.9017 7.9891 N.4 1 LGD -0.8221
9 C7 2.4957 2.2704 5.1384 C.3 1 LGD -0.1234
10 O2 5.2464 1.4553 5.9791 O.3 1 LGD -0.6150
11 C8 -1.5455 -1.6125 1.9219 C.ar 1 LGD 0.0949
12 C9 -2.3348 -0.6202 1.3140 C.ar 1 LGD 0.1531
13 C10 -0.2997 -1.9522 1.3476 C.ar 1 LGD 0.0944
14 O3 -2.0273 -2.2280 3.0646 O.3 1 LGD -0.3400
15 C11 -1.8507 0.0955 0.2032 C.ar 1 LGD -0.1716
16 O4 -3.6103 -0.3790 1.7814 O.3 1 LGD -0.2563
17 C12 0.1542 -1.2554 0.2072 C.ar 1 LGD -0.1911
18 O5 0.4378 -3.0057 1.8590 O.3 1 LGD -0.2644
19 C13 -1.2099 -2.4538 4.2363 C.3 1 LGD 0.3737
20 C14 -0.6094 -0.2248 -0.3821 C.ar 1 LGD -0.0587
21 C15 -4.6628 -0.2365 0.9020 C.ar 1 LGD 0.0797
22 C16 1.7632 -3.2152 1.5578 C.ar 1 LGD 0.1449
23 C17 -0.5820 -1.1173 4.7383 C.3 1 LGD 0.0555
24 O6 -2.0047 -3.0616 5.2931 O.3 1 LGD -0.3947
25 C18 -0.1245 0.5386 -1.6451 C.3 1 LGD 0.0998
26 C19 -5.0485 -1.2913 0.0474 C.ar 1 LGD -0.0043
27 C20 -5.3085 1.0045 0.8072 C.ar 1 LGD -0.1242
28 C21 2.1385 -3.8834 0.3780 C.ar 1 LGD 0.0207
29 C22 2.7460 -2.7139 2.4206 C.ar 1 LGD -0.1404
30 C23 -1.6699 -0.2206 5.4159 C.3 1 LGD 0.0785
31 C24 -3.0558 -2.2953 5.9480 C.3 1 LGD 0.1171
32 C25 -1.2164 0.6928 -2.7233 C.2 1 LGD 0.6577
33 N2 1.0307 -0.1131 -2.2859 N.am 1 LGD -0.5690
34 C26 -6.0330 -1.0774 -0.9316 C.ar 1 LGD -0.1146
35 Cl1 -4.2874 -2.8709 0.1454 Cl 1 LGD -0.1007
36 C27 -6.2873 1.2168 -0.1766 C.ar 1 LGD -0.0734
37 C28 3.4954 -3.9756 0.0287 C.ar 1 LGD -0.0802
38 Cl2 0.9222 -4.5563 -0.6946 Cl 1 LGD -0.0237
39 C29 4.1019 -2.8214 2.0811 C.ar 1 LGD -0.1630
40 C30 -2.4493 -0.9832 6.5192 C.3 1 LGD 0.0877
41 O7 -1.1409 0.9970 5.9336 O.3 1 LGD -0.5991
42 N3 -2.2988 -0.1759 -2.7042 N.am 1 LGD -0.5757
43 O8 -1.1374 1.5478 -3.5893 O.2 1 LGD -0.5156
44 C31 2.3405 0.0677 -1.8610 C.2 1 LGD 0.6579
45 C32 -6.6387 0.1847 -1.0758 C.ar 1 LGD -0.0550
46 C33 4.4892 -3.4213 0.8662 C.ar 1 LGD -0.1461
47 O9 -1.5816 -1.2954 7.6113 O.3 1 LGD -0.6107
48 C34 -3.5854 0.0886 -3.3691 C.3 1 LGD 0.1408
49 C35 3.4664 -0.8297 -2.4326 C.3 1 LGD 0.0694
50 O10 2.5705 0.8978 -0.9968 O.2 1 LGD -0.6476
51 C36 -7.5199 0.4568 -2.3072 C.3 1 LGD 0.1942
52 C37 5.9697 -3.4094 0.4592 C.3 1 LGD 0.1976
53 C38 -3.4819 -0.0829 -4.8899 C.ar 1 LGD -0.1834
54 C39 -4.2676 1.4197 -2.9267 C.2 1 LGD 0.6530
55 N4 4.3093 -1.2734 -1.3115 N.am 1 LGD -0.5973
56 C40 -6.6068 0.6784 -3.5570 C.3 1 LGD -0.0066
57 O11 -8.3787 1.5783 -2.0914 O.3 1 LGD -0.6213
58 C41 6.4162 -2.0603 -0.1813 C.3 1 LGD 0.0639
59 O12 6.2758 -4.4877 -0.4222 O.3 1 LGD -0.5656
60 C42 -3.7420 0.9854 -5.7703 C.ar 1 LGD -0.0586
61 C43 -3.2578 -1.3638 -5.4256 C.ar 1 LGD -0.0794
62 N5 -5.5963 1.7007 -3.2236 N.am 1 LGD -0.5797
63 C44 5.6257 -1.6944 -1.4518 C.2 1 LGD 0.6503
64 C45 -7.3245 1.0808 -4.8630 C.2 1 LGD 0.6557
65 N6 6.2564 -0.9811 0.8058 N.am 1 LGD -0.6033
66 C46 -3.9445 0.7616 -7.1507 C.ar 1 LGD -0.0952
67 C47 -3.3382 -1.5802 -6.8102 C.ar 1 LGD -0.1750
68 O13 6.1396 -1.7213 -2.5571 O.2 1 LGD -0.5338
69 N7 -6.5961 0.9257 -6.0322 N.am 1 LGD -0.5419
70 O14 -8.4620 1.5206 -4.8966 O.2 1 LGD -0.6015
71 C48 6.9047 0.2383 0.6938 C.2 1 LGD 0.6342
72 C49 -4.4646 1.8762 -8.0034 C.ar 1 LGD -0.1318
73 C50 -3.7081 -0.5339 -7.6694 C.ar 1 LGD 0.2111
74 C51 -6.9936 1.4291 -7.3569 C.3 1 LGD -0.0018
75 C52 6.4218 1.4000 1.5730 C.3 1 LGD 0.0302
76 O15 7.8330 0.3700 -0.0836 O.2 1 LGD -0.4802
77 C53 -5.8603 2.2160 -8.0695 C.ar 1 LGD 0.0658
78 C54 -3.5406 2.6425 -8.7614 C.ar 1 LGD 0.1785
79 C55 -7.5204 0.2677 -8.2221 C.2 1 LGD 0.9362
80 C56 4.9749 1.7960 1.1841 C.3 1 LGD -0.1131
81 N8 6.4606 1.0417 3.0107 N.4 1 LGD -0.7444
82 C57 -6.2637 3.2943 -8.8816 C.ar 1 LGD -0.1918
83 C58 -3.9720 3.7093 -9.5613 C.ar 1 LGD -0.3479
84 O16 -2.2063 2.3552 -8.7275 O.3 1 LGD -0.4954
85 C59 -5.3311 4.0349 -9.6189 C.ar 1 LGD 0.1799
86 O17 -5.7490 5.0695 -10.4021 O.3 1 LGD -0.4928
87 O18 -3.6768 2.2903 -2.3128 O.2 1 LGD -0.6142
88 O19 -3.8688 -0.7930 -8.9992 O.3 1 LGD -0.4823
89 O20 -8.6109 -0.1889 -7.9259 O.co2 1 LGD -0.7998
90 O21 -6.8208 -0.1237 -9.1412 O.co2 1 LGD -0.7998
91 C60 7.8462 0.7977 3.4607 C.3 1 LGD 0.0848
92 C61 4.4729 3.0878 1.8852 C.3 1 LGD -0.0662
93 C62 2.9668 3.3028 1.6007 C.3 1 LGD -0.0969
94 C63 5.2926 4.3304 1.4575 C.3 1 LGD -0.0969
95 C64 2.9492 -2.0919 -3.1862 C.3 1 LGD -0.1854
96 C65 2.2886 -1.7552 -4.5239 C.2 1 LGD 0.6508
97 N9 3.0599 -1.2694 -5.5560 N.am 1 LGD -0.6804
98 O22 1.0957 -1.9028 -4.7143 O.2 1 LGD -0.5782
99 C66 -4.2688 -2.0795 5.0005 C.3 1 LGD 0.1124
100 O23 -5.3693 -1.5330 5.7230 O.3 1 LGD -0.6155
101 O24 0.4896 -1.4829 5.6500 O.3 1 LGD -0.4030
102 H1 1.0749 0.3724 6.4271 H 1 LGD 0.0437
103 H2 2.1122 -1.4561 7.7831 H 1 LGD 0.1110
104 H3 2.9437 -2.0609 6.3512 H 1 LGD 0.1110
105 H4 3.6138 1.0216 3.7993 H 1 LGD 0.0842
106 H5 4.7958 -0.4046 5.2267 H 1 LGD 0.0610
107 H6 5.3133 -1.7271 7.2533 H 1 LGD 0.0823
108 H7 5.7057 -0.2379 8.1364 H 1 LGD 0.0823
109 H8 4.5099 -1.3690 8.7934 H 1 LGD 0.0823
110 H9 4.0322 1.5667 8.1360 H 1 LGD 0.4643
111 H10 2.5048 1.3754 7.5617 H 1 LGD 0.4643
112 H11 3.2276 3.0856 5.0852 H 1 LGD 0.0649
113 H12 1.6989 2.4946 4.4182 H 1 LGD 0.0649
114 H13 2.0508 2.2856 6.1382 H 1 LGD 0.0649
115 H14 5.9509 1.0916 6.5445 H 1 LGD 0.4273
116 H15 -2.4599 0.8877 -0.2229 H 1 LGD 0.1890
117 H16 1.1060 -1.5292 -0.2264 H 1 LGD 0.1334
118 H17 -0.4067 -3.1522 3.9845 H 1 LGD 0.1100
119 H18 -0.1631 -0.5799 3.8789 H 1 LGD 0.0818
120 H19 0.1532 1.5561 -1.3412 H 1 LGD 0.1112
121 H20 -5.0122 1.8208 1.4597 H 1 LGD 0.1499
122 H21 2.4546 -2.2260 3.3436 H 1 LGD 0.1484
123 H22 -2.3898 0.0426 4.6311 H 1 LGD 0.1203
124 H23 -3.4248 -2.8866 6.7960 H 1 LGD 0.1176
125 H24 0.8541 -0.7730 -3.0315 H 1 LGD 0.3609
126 H25 -6.2856 -1.8799 -1.6193 H 1 LGD 0.1621
127 H26 -6.7225 2.2072 -0.2747 H 1 LGD 0.1718
128 H27 3.7652 -4.4473 -0.9121 H 1 LGD 0.1819
129 H28 4.8508 -2.4105 2.7522 H 1 LGD 0.0940
130 H29 -3.2656 -0.3442 6.8800 H 1 LGD 0.1259
131 H30 -0.9901 0.8462 6.8837 H 1 LGD 0.4018
132 H31 -2.2622 -0.9442 -2.0502 H 1 LGD 0.3078
133 H32 -0.8954 -1.8910 7.2583 H 1 LGD 0.4129
134 H33 -4.2501 -0.7074 -3.0162 H 1 LGD 0.0585
135 H34 4.0610 -0.2131 -3.1187 H 1 LGD 0.1046
136 H35 -8.1395 -0.4299 -2.4935 H 1 LGD 0.0667
137 H36 6.5614 -3.5428 1.3740 H 1 LGD 0.0394
138 H37 3.9194 -1.2446 -0.3805 H 1 LGD 0.3051
139 H38 -6.1218 -0.2780 -3.7778 H 1 LGD 0.0770
140 H39 -8.8149 1.7633 -2.9450 H 1 LGD 0.4633
141 H40 7.4742 -2.1450 -0.4620 H 1 LGD 0.1382
142 H41 6.0872 -5.3137 0.0569 H 1 LGD 0.4330
143 H42 -3.9096 1.9881 -5.3888 H 1 LGD 0.1457
144 H43 -3.0485 -2.2009 -4.7653 H 1 LGD 0.1187
145 H44 -5.9252 2.6287 -3.0003 H 1 LGD 0.3389
146 H45 5.5262 -1.0741 1.4956 H 1 LGD 0.2966
147 H46 -3.1696 -2.5756 -7.2113 H 1 LGD 0.1483
148 H47 -5.6949 0.4790 -5.9581 H 1 LGD 0.3149
149 H48 -7.8392 2.1160 -7.2274 H 1 LGD 0.0840
150 H49 7.0923 2.2421 1.3922 H 1 LGD 0.1489
151 H50 4.9254 1.9402 0.0964 H 1 LGD 0.1020
152 H51 4.2957 0.9648 1.4152 H 1 LGD 0.1020
153 H52 6.0677 1.8019 3.5515 H 1 LGD 0.4459
154 H53 -7.3166 3.5528 -8.9534 H 1 LGD 0.1586
155 H54 -3.2515 4.2836 -10.1373 H 1 LGD 0.1197
156 H55 -1.7445 2.9842 -9.3076 H 1 LGD 0.4152
157 H56 -4.9709 5.4493 -10.8448 H 1 LGD 0.4166
158 H57 -4.3441 -0.0404 -9.3951 H 1 LGD 0.4723
159 H58 8.2760 -0.0339 2.8985 H 1 LGD 0.1069
160 H59 8.4490 1.6930 3.2963 H 1 LGD 0.1069
161 H60 7.8481 0.5512 4.5240 H 1 LGD 0.1069
162 H61 4.5918 2.9681 2.9688 H 1 LGD -0.0111
163 H62 2.7881 3.4650 0.5300 H 1 LGD 0.0559
164 H63 2.3809 2.4289 1.9133 H 1 LGD 0.0559
165 H64 2.5876 4.1752 2.1477 H 1 LGD 0.0559
166 H65 6.3440 4.2336 1.7549 H 1 LGD 0.0559
167 H66 5.2547 4.4713 0.3697 H 1 LGD 0.0559
168 H67 4.8966 5.2376 1.9314 H 1 LGD 0.0559
169 H68 3.7857 -2.7698 -3.3973 H 1 LGD 0.0839
170 H69 2.2416 -2.6487 -2.5598 H 1 LGD 0.0839
171 H70 4.0539 -1.1460 -5.4316 H 1 LGD 0.3295
172 H71 2.6237 -1.0472 -6.4386 H 1 LGD 0.3295
173 H72 -4.0046 -1.3967 4.1869 H 1 LGD 0.0548
174 H73 -4.5560 -3.0413 4.5574 H 1 LGD 0.0548
175 H74 -6.1006 -1.4117 5.0920 H 1 LGD 0.4294
176 H75 2.9986 0.5165 8.8776 H 1 LGD 0.4643
177 H76 5.9031 0.2146 3.1694 H 1 LGD 0.4459
@BOND
1 1 2 1
2 1 3 1
3 2 4 1
4 3 5 1
5 4 6 1
6 4 7 1
7 4 8 1
8 5 9 1
9 6 10 1
10 5 6 1
11 11 12 ar
12 11 13 ar
13 11 14 1
14 12 15 ar
15 12 16 1
16 13 17 ar
17 13 18 1
18 14 19 1
19 15 20 ar
20 16 21 1
21 18 22 1
22 19 23 1
23 19 24 1
24 20 25 1
25 21 26 ar
26 21 27 ar
27 22 28 ar
28 22 29 ar
29 23 30 1
30 24 31 1
31 25 32 1
32 25 33 1
33 26 34 ar
34 26 35 1
35 27 36 ar
36 28 37 ar
37 28 38 1
38 29 39 ar
39 30 40 1
40 30 41 1
41 32 42 am
42 32 43 2
43 33 44 am
44 34 45 ar
45 37 46 ar
46 40 47 1
47 42 48 1
48 44 49 1
49 44 50 2
50 45 51 1
51 46 52 1
52 48 53 1
53 48 54 1
54 49 55 1
55 51 56 1
56 51 57 1
57 52 58 1
58 52 59 1
59 53 60 ar
60 53 61 ar
61 54 62 am
62 55 63 am
63 56 64 1
64 58 65 1
65 60 66 ar
66 61 67 ar
67 63 68 2
68 64 69 am
69 64 70 2
70 65 71 am
71 66 72 1
72 66 73 ar
73 69 74 1
74 71 75 1
75 71 76 2
76 72 77 ar
77 72 78 ar
78 74 79 1
79 75 80 1
80 75 81 1
81 77 82 ar
82 78 83 ar
83 78 84 1
84 82 85 ar
85 85 86 1
86 17 20 ar
87 31 40 1
88 36 45 ar
89 39 46 ar
90 56 62 1
91 58 63 1
92 67 73 ar
93 74 77 1
94 83 85 ar
95 54 87 2
96 73 88 1
97 79 89 1
98 79 90 2
99 81 91 1
100 80 92 1
101 92 93 1
102 92 94 1
103 49 95 1
104 95 96 1
105 96 97 am
106 96 98 2
107 31 99 1
108 99 100 1
109 23 101 1
110 1 101 1
111 1 102 1
112 2 103 1
113 2 104 1
114 5 105 1
115 6 106 1
116 7 107 1
117 7 108 1
118 7 109 1
119 8 110 1
120 8 111 1
121 9 112 1
122 9 113 1
123 9 114 1
124 10 115 1
125 15 116 1
126 17 117 1
127 19 118 1
128 23 119 1
129 25 120 1
130 27 121 1
131 29 122 1
132 30 123 1
133 31 124 1
134 33 125 1
135 34 126 1
136 36 127 1
137 37 128 1
138 39 129 1
139 40 130 1
140 41 131 1
141 42 132 1
142 47 133 1
143 48 134 1
144 49 135 1
145 51 136 1
146 52 137 1
147 55 138 1
148 56 139 1
149 57 140 1
150 58 141 1
151 59 142 1
152 60 143 1
153 61 144 1
154 62 145 1
155 65 146 1
156 67 147 1
157 69 148 1
158 74 149 1
159 75 150 1
160 80 151 1
161 80 152 1
162 81 153 1
163 82 154 1
164 83 155 1
165 84 156 1
166 86 157 1
167 88 158 1
168 91 159 1
169 91 160 1
170 91 161 1
171 92 162 1
172 93 163 1
173 93 164 1
174 93 165 1
175 94 166 1
176 94 167 1
177 94 168 1
178 95 169 1
179 95 170 1
180 97 171 1
181 97 172 1
182 99 173 1
183 99 174 1
184 100 175 1
185 8 176 1
186 81 177 1