@COMMENT
LIGANDBOX_ID = D00939-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D00939
NAME = Alendronate_sodium_(USP)_Alendronate_sodium_hydrate_(JP18)_Binosto_(TN)_Fosamax_(TN)
MOLECULAR_FORMULA = C4H12NO7P2
MOLECULAR_WEIGHT = 248.088
MOLECULAR_CHARGE = -1
NUM_OF_DONOR = 6
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 1
TPSA = 164.1400
HOMO = 4.4492
LUMO = 6.9885
mLOGD = -2.381
mLOGPA = -6.517
mLOGS = 1.924
@MOLECULE
D00939-01
24 23 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 P1 0.1710 -0.0430 -0.0760 P.3 1 LGD 0.9439
2 C1 2.0160 0.1940 0.1960 C.3 1 LGD 0.0839
3 C2 2.5220 1.5780 -0.3270 C.3 1 LGD -0.0423
4 O1 2.6960 -0.8580 -0.5000 O.3 1 LGD -0.6322
5 P2 2.4390 0.0270 2.0180 P.3 1 LGD 0.9439
6 O2 1.3500 0.8990 2.8220 O.co2 1 LGD -0.8037
7 O3 -0.5420 1.1030 0.8050 O.co2 1 LGD -0.8037
8 O4 -0.2260 -0.0590 -1.5070 O.co2 1 LGD -0.8037
9 O5 3.8530 0.3580 2.3280 O.co2 1 LGD -0.8037
10 C3 2.3890 1.8130 -1.8570 C.3 1 LGD -0.0872
11 C4 3.0650 3.1330 -2.2900 C.3 1 LGD 0.0474
12 N1 2.9100 3.3260 -3.7360 N.4 1 LGD -0.8130
13 O6 -0.2170 -1.3860 0.7260 O.co2 1 LGD -0.8037
14 O7 2.0090 -1.4650 2.4480 O.co2 1 LGD -0.8037
15 H1 1.9890 2.3780 0.2030 H 1 LGD 0.0342
16 H2 3.5800 1.6870 -0.0550 H 1 LGD 0.0342
17 H3 2.1140 -1.6390 -0.4810 H 1 LGD 0.4146
18 H4 2.8430 0.9790 -2.4080 H 1 LGD 0.0537
19 H5 1.3310 1.8560 -2.1400 H 1 LGD 0.0537
20 H6 2.6060 3.9760 -1.7570 H 1 LGD 0.0280
21 H7 4.1330 3.1040 -2.0380 H 1 LGD 0.0280
22 H8 1.9280 3.3020 -3.9720 H 1 LGD 0.2438
23 H9 3.3910 4.1700 -4.0140 H 1 LGD 0.2438
24 H10 3.2546 2.5165 -4.2113 H 1 LGD 0.2438
@BOND
1 1 2 1
2 2 3 1
3 2 4 1
4 2 5 1
5 5 6 1
6 1 7 1
7 1 8 2
8 5 9 2
9 3 10 1
10 10 11 1
11 11 12 1
12 1 13 1
13 5 14 1
14 3 15 1
15 3 16 1
16 4 17 1
17 10 18 1
18 10 19 1
19 11 20 1
20 11 21 1
21 12 22 1
22 12 23 1
23 12 24 1