@COMMENT
LIGANDBOX_ID = D01080-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01080
NAME = Daptomycin_(JAN/USAN/INN)_Cubicin_(TN)_ABBR______DAP
MOLECULAR_FORMULA = C72H101N17O26
MOLECULAR_WEIGHT = 1620.693
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 25
NUM_OF_ACCEPTOR = 26
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 702.0200
HOMO = -0.5207
LUMO = 3.1049
mLOGPA = -10.359
mLOGD = -2.796
mLOGS = -1.362
@MOLECULE
D01080-01
213 216 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 18.1440 16.3050 4.0680 C.3 1 LGD -0.0836
2 C2 17.3540 15.3740 5.0120 C.3 1 LGD -0.0716
3 C3 16.8240 14.1250 4.2730 C.3 1 LGD -0.0693
4 C4 15.9800 13.2010 5.1820 C.3 1 LGD -0.0713
5 C5 15.3300 12.0570 4.3700 C.3 1 LGD -0.0744
6 C6 14.4040 11.1650 5.2320 C.3 1 LGD -0.0796
7 C7 13.5760 10.1610 4.3890 C.3 1 LGD -0.0778
8 C8 14.4360 9.0540 3.7230 C.3 1 LGD -0.0711
9 C9 13.5840 8.0480 2.9080 C.3 1 LGD -0.1526
10 C10 12.8750 8.7160 1.7270 C.2 1 LGD 0.6657
11 N1 13.6480 9.2050 0.6840 N.am 1 LGD -0.6007
12 O1 11.6620 8.8290 1.6900 O.2 1 LGD -0.5976
13 C11 13.0740 9.9950 -0.4160 C.3 1 LGD 0.0545
14 C12 13.9910 9.9290 -1.6440 C.2 1 LGD 0.6532
15 N2 15.2600 10.4860 -1.5690 N.am 1 LGD -0.5991
16 O2 13.6220 9.4050 -2.6820 O.2 1 LGD -0.5562
17 C13 16.1210 10.6300 -2.7510 C.3 1 LGD 0.0558
18 C14 16.9890 11.8840 -2.5890 C.2 1 LGD 0.6425
19 C15 16.9740 9.3560 -2.9580 C.3 1 LGD -0.1448
20 C16 17.8100 9.4400 -4.2370 C.2 1 LGD 0.6697
21 N3 17.1780 9.4320 -5.4620 N.am 1 LGD -0.6816
22 O3 19.0240 9.5070 -4.2190 O.2 1 LGD -0.6627
23 N4 16.6910 12.9860 -3.3720 N.am 1 LGD -0.5855
24 C17 17.3790 14.2790 -3.2300 C.3 1 LGD 0.0754
25 O4 17.9140 11.9370 -1.7970 O.2 1 LGD -0.6075
26 C18 12.8530 11.4530 0.0570 C.3 1 LGD -0.0054
27 C19 12.3880 12.3510 -1.0560 C.ar 1 LGD -0.1843
28 C20 11.1210 12.4080 -1.7350 C.ar 1 LGD -0.0786
29 C21 11.1760 13.4350 -2.6220 C.ar 1 LGD -0.0143
30 N5 12.4000 14.0560 -2.5650 N.ar 1 LGD -0.1852
31 C22 13.1710 13.3700 -1.6060 C.ar 1 LGD -0.0628
32 C23 9.9660 11.6330 -1.5800 C.ar 1 LGD -0.0912
33 C24 8.8520 11.9490 -2.3850 C.ar 1 LGD -0.1706
34 C25 8.9150 13.0200 -3.3080 C.ar 1 LGD -0.1202
35 C26 10.0930 13.7840 -3.4350 C.ar 1 LGD -0.1317
36 C27 16.4780 15.4110 -3.7560 C.2 1 LGD 0.6845
37 C28 18.7600 14.2350 -3.9370 C.3 1 LGD -0.1819
38 C29 19.5130 15.5650 -3.8370 C.2 1 LGD 0.8818
39 O5 19.4090 16.3540 -4.9330 O.co2 1 LGD -0.8514
40 O6 20.2060 15.8730 -2.8860 O.co2 1 LGD -0.8514
41 N6 16.6930 16.6930 -3.2720 N.am 1 LGD -0.5761
42 O7 15.5750 15.2070 -4.5530 O.2 1 LGD -0.6480
43 C30 15.8160 17.8310 -3.5940 C.3 1 LGD 0.0324
44 C31 16.1430 19.0510 -2.6690 C.3 1 LGD 0.1575
45 C32 15.8670 18.1810 -5.0920 C.2 1 LGD 0.6654
46 O8 14.8450 18.2570 -5.7530 O.2 1 LGD -0.6263
47 N7 17.0960 18.3660 -5.7140 N.am 1 LGD -0.5882
48 C33 17.2190 18.6970 -7.1430 C.3 1 LGD 0.0527
49 C34 17.3150 17.4220 -7.9820 C.2 1 LGD 0.6657
50 O9 18.2600 17.2110 -8.7220 O.2 1 LGD -0.6455
51 N8 16.2980 16.4880 -7.8660 N.am 1 LGD -0.5871
52 C35 16.3490 15.1590 -8.4930 C.3 1 LGD 0.0748
53 C36 17.3710 14.2680 -7.7330 C.3 1 LGD -0.1067
54 C37 14.9410 14.5480 -8.4530 C.2 1 LGD 0.6574
55 C38 17.5540 12.8680 -8.3730 C.3 1 LGD -0.0966
56 C39 18.5270 11.9700 -7.5710 C.3 1 LGD 0.0910
57 N9 19.9020 12.4800 -7.6490 N.4 1 LGD -0.8121
58 O10 14.3890 14.1360 -9.4590 O.2 1 LGD -0.6335
59 N10 14.2960 14.4800 -7.2270 N.am 1 LGD -0.5531
60 C40 12.9850 13.8370 -7.0320 C.3 1 LGD 0.0768
61 C41 11.9170 14.9190 -6.8350 C.2 1 LGD 0.6533
62 N11 12.1700 15.9390 -5.9290 N.am 1 LGD -0.5872
63 C42 13.0430 12.9100 -5.7910 C.3 1 LGD -0.1932
64 C43 13.9640 11.6990 -5.9760 C.2 1 LGD 0.9040
65 O11 15.2790 12.0070 -5.9690 O.co2 1 LGD -0.8685
66 O12 13.5780 10.5460 -5.9210 O.co2 1 LGD -0.8685
67 O13 10.8660 14.9020 -7.4530 O.2 1 LGD -0.6279
68 C44 11.1580 16.9260 -5.5250 C.3 1 LGD 0.0527
69 C45 11.3410 17.2740 -4.0380 C.2 1 LGD 0.6489
70 C46 11.2560 18.1820 -6.4180 C.3 1 LGD -0.1026
71 N12 10.3270 17.9590 -3.3830 N.am 1 LGD -0.5744
72 O14 12.3360 16.9410 -3.4170 O.2 1 LGD -0.6267
73 C47 10.4030 18.2820 -1.9490 C.3 1 LGD 0.0662
74 C48 9.8090 17.1310 -1.1250 C.2 1 LGD 0.6766
75 C49 9.7010 19.6360 -1.6780 C.3 1 LGD -0.1802
76 C50 9.8800 20.0920 -0.2230 C.2 1 LGD 0.8630
77 O15 9.0580 19.4840 0.6630 O.co2 1 LGD -0.8110
78 O16 10.6430 20.9780 0.1130 O.co2 1 LGD -0.8110
79 N13 10.6750 16.2110 -0.5530 N.am 1 LGD -0.5886
80 O17 8.6070 17.0280 -0.9380 O.2 1 LGD -0.5688
81 C51 10.2090 15.1620 0.3650 C.3 1 LGD 0.0505
82 C52 11.2910 14.7920 1.3850 C.2 1 LGD 0.6681
83 N14 10.8930 14.5490 2.6900 N.am 1 LGD -0.6011
84 O18 12.4730 14.7330 1.0920 O.2 1 LGD -0.6345
85 C53 11.8500 14.4340 3.8060 C.3 1 LGD 0.0683
86 C54 12.6780 15.7250 3.9530 C.2 1 LGD 0.6576
87 C55 11.0400 14.1420 5.0900 C.3 1 LGD 0.1143
88 O19 11.9080 13.9060 6.1970 O.3 1 LGD -0.6009
89 O20 13.8360 15.7040 4.3300 O.2 1 LGD -0.6285
90 N15 12.0820 16.9300 3.6060 N.am 1 LGD -0.5748
91 C56 12.7380 18.2450 3.6970 C.3 1 LGD 0.0765
92 C57 11.7500 19.3470 3.1780 C.3 1 LGD -0.0553
93 C58 14.0540 18.2280 2.8960 C.2 1 LGD 0.6766
94 N16 14.0000 17.9310 1.5420 N.am 1 LGD -0.5871
95 O21 15.1290 18.4510 3.4270 O.2 1 LGD -0.6317
96 C59 15.2010 17.6880 0.7270 C.3 1 LGD 0.0964
97 C60 14.9600 18.2410 -0.6880 C.2 1 LGD 0.6197
98 C61 15.4740 16.1580 0.7270 C.3 1 LGD -0.1942
99 O22 16.1250 18.6160 -1.2920 O.3 1 LGD -0.4257
100 O23 13.8550 18.3700 -1.1860 O.2 1 LGD -0.4930
101 C62 17.5370 19.6810 -2.9050 C.3 1 LGD -0.1027
102 C63 10.4720 19.5050 4.0690 C.3 1 LGD -0.1558
103 C64 12.4570 20.7250 3.0600 C.3 1 LGD -0.0794
104 C65 9.5790 18.2570 4.1540 C.2 1 LGD 0.8688
105 O24 9.0720 17.8440 2.9710 O.co2 1 LGD -0.8491
106 O25 9.4270 17.6120 5.1750 O.co2 1 LGD -0.8491
107 C66 16.8880 15.7170 0.3030 C.2 1 LGD 0.5894
108 O26 17.6270 16.4610 -0.3170 O.2 1 LGD -0.5489
109 C67 17.3260 14.3150 0.6940 C.ar 1 LGD -0.2418
110 C68 16.3560 13.2980 0.8380 C.ar 1 LGD -0.0391
111 C69 16.7230 11.9950 1.2060 C.ar 1 LGD -0.2212
112 C70 18.0670 11.6840 1.4380 C.ar 1 LGD -0.0515
113 C71 19.0460 12.6770 1.2990 C.ar 1 LGD -0.2264
114 C72 18.6880 13.9870 0.9310 C.ar 1 LGD 0.2577
115 N17 19.6920 14.9220 0.8290 N.pl3 1 LGD -0.8678
116 H1 19.0180 15.7880 3.6530 H 1 LGD 0.0296
117 H2 17.5150 16.6430 3.2350 H 1 LGD 0.0296
118 H3 18.4970 17.1920 4.6090 H 1 LGD 0.0296
119 H4 17.9980 15.0660 5.8450 H 1 LGD 0.0342
120 H5 16.5130 15.9320 5.4440 H 1 LGD 0.0342
121 H6 16.2080 14.4520 3.4270 H 1 LGD 0.0431
122 H7 17.6670 13.5590 3.8580 H 1 LGD 0.0431
123 H8 16.6140 12.7800 5.9720 H 1 LGD 0.0379
124 H9 15.1960 13.7880 5.6770 H 1 LGD 0.0379
125 H10 14.7510 12.4860 3.5420 H 1 LGD 0.0400
126 H11 16.1230 11.4430 3.9270 H 1 LGD 0.0400
127 H12 15.0000 10.6230 5.9780 H 1 LGD 0.0385
128 H13 13.7090 11.8040 5.7910 H 1 LGD 0.0385
129 H14 12.8290 9.6890 5.0410 H 1 LGD 0.0455
130 H15 13.0150 10.7140 3.6240 H 1 LGD 0.0455
131 H16 15.1880 9.5030 3.0640 H 1 LGD 0.0381
132 H17 14.9850 8.5070 4.5010 H 1 LGD 0.0381
133 H18 14.2340 7.2550 2.5180 H 1 LGD 0.0526
134 H19 12.8400 7.5690 3.5560 H 1 LGD 0.0526
135 H20 14.6460 9.0540 0.7070 H 1 LGD 0.3072
136 H21 12.1090 9.5650 -0.7130 H 1 LGD 0.1062
137 H22 15.5670 10.8870 -0.6950 H 1 LGD 0.3230
138 H23 15.4930 10.7800 -3.6370 H 1 LGD 0.1300
139 H24 17.6360 9.1920 -2.0980 H 1 LGD 0.0720
140 H25 16.3160 8.4810 -3.0360 H 1 LGD 0.0720
141 H26 16.1690 9.4180 -5.5170 H 1 LGD 0.3218
142 H27 17.7300 9.4750 -6.3060 H 1 LGD 0.3218
143 H28 15.9380 12.9090 -4.0420 H 1 LGD 0.3712
144 H29 17.5460 14.4770 -2.1640 H 1 LGD 0.0872
145 H30 12.1120 11.4660 0.8660 H 1 LGD 0.0561
146 H31 13.7800 11.8430 0.4910 H 1 LGD 0.0561
147 H32 12.6760 14.8830 -3.0770 H 1 LGD 0.3377
148 H33 14.1830 13.6730 -1.3740 H 1 LGD 0.1645
149 H34 9.9260 10.8190 -0.8620 H 1 LGD 0.1275
150 H35 7.9380 11.3690 -2.2930 H 1 LGD 0.1090
151 H36 8.0500 13.2570 -3.9210 H 1 LGD 0.1174
152 H37 10.1540 14.6100 -4.1340 H 1 LGD 0.1338
153 H38 19.3870 13.4530 -3.4910 H 1 LGD 0.0269
154 H39 18.6340 13.9660 -4.9930 H 1 LGD 0.0269
155 H40 17.4170 16.8330 -2.5790 H 1 LGD 0.3580
156 H41 14.7840 17.5230 -3.3930 H 1 LGD 0.1250
157 H42 15.3830 19.8300 -2.8180 H 1 LGD 0.0715
158 H43 17.9380 18.2360 -5.1700 H 1 LGD 0.3693
159 H44 16.3530 19.2770 -7.4850 H 1 LGD 0.0678
160 H45 18.1250 19.2930 -7.3080 H 1 LGD 0.0678
161 H46 15.5130 16.7160 -7.2710 H 1 LGD 0.3497
162 H47 16.6500 15.2570 -9.5440 H 1 LGD 0.0694
163 H48 18.3430 14.7740 -7.7030 H 1 LGD 0.0810
164 H49 17.0460 14.1530 -6.6920 H 1 LGD 0.0810
165 H50 16.5830 12.3600 -8.4300 H 1 LGD 0.0778
166 H51 17.9120 12.9740 -9.4050 H 1 LGD 0.0778
167 H52 18.2090 11.9220 -6.5220 H 1 LGD 0.1196
168 H53 18.5000 10.9520 -7.9800 H 1 LGD 0.1196
169 H54 20.2190 12.4430 -8.6080 H 1 LGD 0.4499
170 H55 19.9450 13.3970 -7.2270 H 1 LGD 0.4499
171 H56 14.7400 14.9190 -6.4310 H 1 LGD 0.3516
172 H57 12.7040 13.2410 -7.9100 H 1 LGD 0.1022
173 H58 13.0710 15.9690 -5.4720 H 1 LGD 0.3435
174 H59 13.3970 13.4790 -4.9250 H 1 LGD 0.0597
175 H60 12.0360 12.5460 -5.5520 H 1 LGD 0.0597
176 H61 10.1540 16.4970 -5.6330 H 1 LGD 0.0742
177 H62 11.1230 17.9170 -7.4750 H 1 LGD 0.0434
178 H63 10.4800 18.9100 -6.1520 H 1 LGD 0.0434
179 H64 12.2320 18.6680 -6.3070 H 1 LGD 0.0434
180 H65 9.4990 18.2140 -3.9010 H 1 LGD 0.3058
181 H66 11.4510 18.3940 -1.6510 H 1 LGD 0.1013
182 H67 10.1220 20.4080 -2.3350 H 1 LGD 0.0253
183 H68 8.6300 19.5670 -1.9090 H 1 LGD 0.0253
184 H69 11.6620 16.2680 -0.7660 H 1 LGD 0.3219
185 H70 9.3300 15.5120 0.9230 H 1 LGD 0.0800
186 H71 9.9230 14.2630 -0.1910 H 1 LGD 0.0800
187 H72 9.9060 14.5750 2.9030 H 1 LGD 0.3325
188 H73 12.5410 13.6030 3.6120 H 1 LGD 0.0768
189 H74 10.3810 14.9940 5.3040 H 1 LGD 0.0473
190 H75 10.4070 13.2610 4.9230 H 1 LGD 0.0473
191 H76 11.3560 13.8120 6.9930 H 1 LGD 0.3929
192 H77 11.1290 16.8950 3.2700 H 1 LGD 0.3738
193 H78 12.9920 18.4490 4.7450 H 1 LGD 0.0713
194 H79 11.4280 19.0650 2.1680 H 1 LGD 0.1156
195 H80 13.0960 17.7810 1.1200 H 1 LGD 0.3502
196 H81 16.0640 18.2140 1.1540 H 1 LGD 0.1019
197 H82 15.2980 15.7690 1.7380 H 1 LGD 0.0971
198 H83 14.7460 15.6650 0.0710 H 1 LGD 0.0971
199 H84 17.5670 20.2280 -3.8550 H 1 LGD 0.0509
200 H85 17.7720 20.3980 -2.1090 H 1 LGD 0.0509
201 H86 18.3250 18.9170 -2.9160 H 1 LGD 0.0509
202 H87 10.7650 19.7930 5.0870 H 1 LGD 0.0250
203 H88 9.8550 20.3230 3.6770 H 1 LGD 0.0250
204 H89 13.2460 20.7060 2.2990 H 1 LGD 0.0243
205 H90 11.7440 21.5070 2.7680 H 1 LGD 0.0243
206 H91 12.9080 21.0170 4.0170 H 1 LGD 0.0243
207 H92 15.3070 13.5120 0.6730 H 1 LGD 0.1477
208 H93 15.9650 11.2270 1.3190 H 1 LGD 0.1121
209 H94 18.3520 10.6760 1.7260 H 1 LGD 0.1072
210 H95 20.0880 12.4290 1.4830 H 1 LGD 0.1154
211 H96 20.6460 14.5920 0.7860 H 1 LGD 0.4338
212 H97 19.4680 15.7960 0.3700 H 1 LGD 0.4338
213 H98 20.5171 11.8268 -7.2073 H 1 LGD 0.4499
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 6 7 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 am
11 10 12 2
12 11 13 1
13 13 14 1
14 14 15 am
15 14 16 2
16 15 17 1
17 17 18 1
18 17 19 1
19 19 20 1
20 20 21 am
21 20 22 2
22 18 23 am
23 23 24 1
24 18 25 2
25 13 26 1
26 26 27 1
27 27 28 1
28 28 29 ar
29 29 30 1
30 30 31 1
31 27 31 2
32 28 32 ar
33 32 33 ar
34 33 34 ar
35 34 35 ar
36 29 35 ar
37 24 36 1
38 24 37 1
39 37 38 1
40 38 39 1
41 38 40 2
42 36 41 am
43 36 42 2
44 41 43 1
45 43 44 1
46 43 45 1
47 45 46 2
48 45 47 am
49 47 48 1
50 48 49 1
51 49 50 2
52 49 51 am
53 51 52 1
54 52 53 1
55 52 54 1
56 53 55 1
57 55 56 1
58 56 57 1
59 54 58 2
60 54 59 am
61 59 60 1
62 60 61 1
63 61 62 am
64 60 63 1
65 63 64 1
66 64 65 1
67 64 66 2
68 61 67 2
69 62 68 1
70 68 69 1
71 68 70 1
72 69 71 am
73 69 72 2
74 71 73 1
75 73 74 1
76 73 75 1
77 75 76 1
78 76 77 1
79 76 78 2
80 74 79 am
81 74 80 2
82 79 81 1
83 81 82 1
84 82 83 am
85 82 84 2
86 83 85 1
87 85 86 1
88 85 87 1
89 87 88 1
90 86 89 2
91 86 90 am
92 90 91 1
93 91 92 1
94 91 93 1
95 93 94 am
96 93 95 2
97 94 96 1
98 96 97 1
99 96 98 1
100 97 99 1
101 97 100 2
102 44 99 1
103 44 101 1
104 92 102 1
105 92 103 1
106 102 104 1
107 104 105 1
108 104 106 2
109 98 107 1
110 107 108 2
111 107 109 1
112 109 110 ar
113 110 111 ar
114 111 112 ar
115 112 113 ar
116 113 114 ar
117 109 114 ar
118 114 115 1
119 1 116 1
120 1 117 1
121 1 118 1
122 2 119 1
123 2 120 1
124 3 121 1
125 3 122 1
126 4 123 1
127 4 124 1
128 5 125 1
129 5 126 1
130 6 127 1
131 6 128 1
132 7 129 1
133 7 130 1
134 8 131 1
135 8 132 1
136 9 133 1
137 9 134 1
138 11 135 1
139 13 136 1
140 15 137 1
141 17 138 1
142 19 139 1
143 19 140 1
144 21 141 1
145 21 142 1
146 23 143 1
147 24 144 1
148 26 145 1
149 26 146 1
150 30 147 1
151 31 148 1
152 32 149 1
153 33 150 1
154 34 151 1
155 35 152 1
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158 41 155 1
159 43 156 1
160 44 157 1
161 47 158 1
162 48 159 1
163 48 160 1
164 51 161 1
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168 55 165 1
169 55 166 1
170 56 167 1
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172 57 169 1
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177 63 174 1
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179 68 176 1
180 70 177 1
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199 96 196 1
200 98 197 1
201 98 198 1
202 101 199 1
203 101 200 1
204 101 201 1
205 102 202 1
206 102 203 1
207 103 204 1
208 103 205 1
209 103 206 1
210 110 207 1
211 111 208 1
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214 115 211 1
215 115 212 1
216 57 213 1