@COMMENT
LIGANDBOX_ID = D01080-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01080
NAME = Daptomycin_(JAN/USAN/INN)_Cubicin_(TN)_ABBR______DAP
MOLECULAR_FORMULA = C72H101N17O26
MOLECULAR_WEIGHT = 1620.693
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 25
NUM_OF_ACCEPTOR = 26
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 702.0200
HOMO = -0.5207
LUMO = 3.1049
mLOGPA = -10.359
mLOGD = -2.796
mLOGS = -1.362
@MOLECULE
D01080-02
213 216 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.9532 -2.7309 -7.2552 C.3 1 LGD -0.0917
2 C2 -2.4638 -4.0839 -6.7155 C.3 1 LGD -0.0719
3 C3 -2.5531 -4.1014 -5.1707 C.3 1 LGD -0.0902
4 C4 -2.8227 -5.5214 -4.6154 C.3 1 LGD -0.0612
5 C5 -2.7614 -5.5861 -3.0677 C.3 1 LGD -0.0877
6 C6 -2.9983 -7.0293 -2.5503 C.3 1 LGD -0.0678
7 C7 -2.7207 -7.2063 -1.0357 C.3 1 LGD -0.0776
8 C8 -3.7508 -6.4883 -0.1266 C.3 1 LGD -0.0699
9 C9 -3.5226 -6.7928 1.3769 C.3 1 LGD -0.1504
10 C10 -2.1829 -6.2552 1.8859 C.2 1 LGD 0.6710
11 N1 -1.9914 -4.8849 1.8627 N.am 1 LGD -0.5721
12 O1 -1.3038 -6.9908 2.3015 O.2 1 LGD -0.6290
13 C11 -0.7099 -4.2397 2.1835 C.3 1 LGD 0.0604
14 C12 0.2127 -4.2193 0.9481 C.2 1 LGD 0.6464
15 N2 1.4957 -3.7017 1.0768 N.am 1 LGD -0.5960
16 O2 -0.1538 -4.6383 -0.1384 O.2 1 LGD -0.5712
17 C13 2.3714 -3.5081 -0.0899 C.3 1 LGD 0.0569
18 C14 3.2283 -2.2492 0.0897 C.2 1 LGD 0.6450
19 C15 3.2270 -4.7730 -0.3421 C.3 1 LGD -0.1449
20 C16 3.9676 -4.6979 -1.6794 C.2 1 LGD 0.6688
21 N3 3.2470 -4.7352 -2.8522 N.am 1 LGD -0.6820
22 O3 5.1794 -4.6173 -1.7574 O.2 1 LGD -0.6776
23 N4 2.9711 -1.1719 -0.7398 N.am 1 LGD -0.5949
24 C17 3.6328 0.1319 -0.6067 C.3 1 LGD 0.0792
25 O4 4.1098 -2.1769 0.9275 O.2 1 LGD -0.6078
26 C18 -0.9976 -2.8104 2.7105 C.3 1 LGD 0.0029
27 C19 -1.4845 -1.8754 1.6307 C.ar 1 LGD -0.2003
28 C20 -2.7714 -1.7533 0.9882 C.ar 1 LGD -0.0789
29 C21 -2.6752 -0.7562 0.0692 C.ar 1 LGD -0.0166
30 N5 -1.4231 -0.1945 0.0973 N.ar 1 LGD -0.1765
31 C22 -0.6666 -0.9032 1.0485 C.ar 1 LGD -0.0482
32 C23 -3.9745 -2.4461 1.1849 C.ar 1 LGD -0.1256
33 C24 -5.0736 -2.1041 0.3696 C.ar 1 LGD -0.1621
34 C25 -4.9563 -1.0816 -0.6008 C.ar 1 LGD -0.1231
35 C26 -3.7418 -0.3850 -0.7549 C.ar 1 LGD -0.1157
36 C27 2.6925 1.2520 -1.0935 C.2 1 LGD 0.6777
37 C28 4.9779 0.1151 -1.3789 C.3 1 LGD -0.2265
38 C29 5.6566 1.4874 -1.3910 C.2 1 LGD 0.9241
39 O5 5.6878 2.0826 -2.4541 O.co2 1 LGD -0.8399
40 O6 6.1068 1.8957 -0.3354 O.co2 1 LGD -0.8399
41 N6 2.9144 2.5370 -0.6259 N.am 1 LGD -0.5819
42 O7 1.7538 1.0416 -1.8460 O.2 1 LGD -0.6530
43 C30 2.0394 3.6706 -0.9659 C.3 1 LGD 0.0314
44 C31 2.3398 4.8876 -0.0317 C.3 1 LGD 0.1599
45 C32 2.1360 4.0236 -2.4602 C.2 1 LGD 0.6611
46 O8 1.1322 4.1746 -3.1357 O.2 1 LGD -0.6246
47 N7 3.3836 4.1206 -3.0645 N.am 1 LGD -0.5949
48 C33 3.5547 4.5198 -4.4714 C.3 1 LGD 0.0520
49 C34 3.5624 3.2945 -5.3873 C.2 1 LGD 0.6619
50 O9 4.4632 3.0915 -6.1839 O.2 1 LGD -0.6434
51 N8 2.5123 2.3969 -5.2790 N.am 1 LGD -0.5865
52 C35 2.5326 1.0598 -5.8898 C.3 1 LGD 0.0731
53 C36 3.5655 0.1766 -5.1344 C.3 1 LGD -0.1162
54 C37 1.1190 0.4660 -5.8068 C.2 1 LGD 0.6508
55 C38 3.7173 -1.2457 -5.7309 C.3 1 LGD -0.0954
56 C39 4.5747 -2.1642 -4.8319 C.3 1 LGD 0.0977
57 N9 5.9376 -1.6187 -4.6916 N.4 1 LGD -0.8218
58 O10 0.4761 0.1771 -6.8015 O.2 1 LGD -0.6255
59 N10 0.5844 0.2639 -4.5453 N.am 1 LGD -0.5635
60 C40 -0.6674 -0.4626 -4.2950 C.3 1 LGD 0.0734
61 C41 -1.8042 0.5500 -4.0875 C.2 1 LGD 0.6597
62 N11 -1.5647 1.6468 -3.2704 N.am 1 LGD -0.5845
63 C42 -0.4740 -1.3640 -3.0455 C.3 1 LGD -0.2373
64 C43 0.6531 -2.3962 -3.2000 C.2 1 LGD 0.9465
65 O11 1.7955 -1.9774 -3.2104 O.co2 1 LGD -0.8567
66 O12 0.3477 -3.5721 -3.2568 O.co2 1 LGD -0.8567
67 O13 -2.8860 0.4212 -4.6348 O.2 1 LGD -0.6293
68 C44 -2.5947 2.6342 -2.9055 C.3 1 LGD 0.0502
69 C45 -2.4486 3.0126 -1.4225 C.2 1 LGD 0.6465
70 C46 -2.4831 3.8740 -3.8203 C.3 1 LGD -0.1038
71 N12 -3.4447 3.7739 -0.8282 N.am 1 LGD -0.5710
72 O14 -1.4982 2.6389 -0.7540 O.2 1 LGD -0.6229
73 C47 -3.4238 4.1008 0.6053 C.3 1 LGD 0.0672
74 C48 -4.0056 2.9305 1.4137 C.2 1 LGD 0.6794
75 C49 -4.1726 5.4314 0.8580 C.3 1 LGD -0.2263
76 C50 -3.9796 5.9135 2.3004 C.2 1 LGD 0.9315
77 O15 -4.9345 5.8338 3.0518 O.co2 1 LGD -0.8183
78 O16 -2.8832 6.3584 2.5923 O.co2 1 LGD -0.8183
79 N13 -3.1366 2.1600 2.1694 N.am 1 LGD -0.5779
80 O17 -5.1940 2.6531 1.3914 O.2 1 LGD -0.6135
81 C51 -3.6143 1.0769 3.0392 C.3 1 LGD 0.0502
82 C52 -2.5323 0.6421 4.0296 C.2 1 LGD 0.6682
83 N14 -2.9177 0.3748 5.3334 N.am 1 LGD -0.6012
84 O18 -1.3566 0.5607 3.7173 O.2 1 LGD -0.6259
85 C53 -1.9501 0.2375 6.4382 C.3 1 LGD 0.0665
86 C54 -1.0961 1.5132 6.5761 C.2 1 LGD 0.6545
87 C55 -2.7559 -0.0310 7.7303 C.3 1 LGD 0.1162
88 O19 -1.8832 -0.2879 8.8270 O.3 1 LGD -0.5962
89 O20 0.0759 1.4751 6.9094 O.2 1 LGD -0.6202
90 N15 -1.7020 2.7214 6.2672 N.am 1 LGD -0.5881
91 C56 -1.0668 4.0450 6.3441 C.3 1 LGD 0.0774
92 C57 -2.0952 5.1168 5.8403 C.3 1 LGD -0.0600
93 C58 0.2394 4.0583 5.5268 C.2 1 LGD 0.6781
94 N16 0.1768 3.7669 4.1720 N.am 1 LGD -0.5848
95 O21 1.3158 4.3016 6.0465 O.2 1 LGD -0.6297
96 C59 1.3734 3.5096 3.3544 C.3 1 LGD 0.0967
97 C60 1.1415 4.0453 1.9312 C.2 1 LGD 0.6210
98 C61 1.6419 1.9780 3.3798 C.3 1 LGD -0.1929
99 O22 2.3080 4.4473 1.3438 O.3 1 LGD -0.4238
100 O23 0.0409 4.1381 1.4153 O.2 1 LGD -0.4897
101 C62 3.7318 5.5279 -0.2543 C.3 1 LGD -0.1020
102 C63 -3.3632 5.2284 6.7532 C.3 1 LGD -0.2063
103 C64 -1.4326 6.5153 5.7159 C.3 1 LGD -0.0765
104 C65 -4.2533 3.9716 6.8098 C.2 1 LGD 0.9364
105 O24 -4.4845 3.3897 5.7629 O.co2 1 LGD -0.8516
106 O25 -4.6352 3.6124 7.9093 O.co2 1 LGD -0.8516
107 C66 3.0494 1.5292 2.9477 C.2 1 LGD 0.5898
108 O26 3.7865 2.2708 2.3211 O.2 1 LGD -0.5481
109 C67 3.4850 0.1297 3.3483 C.ar 1 LGD -0.2382
110 C68 2.5091 -0.8686 3.5762 C.ar 1 LGD -0.0386
111 C69 2.8783 -2.1652 3.9654 C.ar 1 LGD -0.2208
112 C70 4.2292 -2.4905 4.1332 C.ar 1 LGD -0.0536
113 C71 5.2121 -1.5174 3.9093 C.ar 1 LGD -0.2257
114 C72 4.8521 -0.2163 3.5169 C.ar 1 LGD 0.2500
115 N17 5.8630 0.6929 3.3173 N.pl3 1 LGD -0.8612
116 H1 -2.5816 -1.9035 -6.9019 H 1 LGD 0.0359
117 H2 -0.9218 -2.5488 -6.9273 H 1 LGD 0.0359
118 H3 -1.9628 -2.7259 -8.3521 H 1 LGD 0.0359
119 H4 -3.4510 -4.3009 -7.1425 H 1 LGD 0.0147
120 H5 -1.7847 -4.8764 -7.0559 H 1 LGD 0.0147
121 H6 -1.6110 -3.7264 -4.7625 H 1 LGD 0.0681
122 H7 -3.3402 -3.4136 -4.8354 H 1 LGD 0.0681
123 H8 -3.8067 -5.8658 -4.9589 H 1 LGD 0.0133
124 H9 -2.0789 -6.2150 -5.0290 H 1 LGD 0.0133
125 H10 -1.7789 -5.2349 -2.7274 H 1 LGD 0.0708
126 H11 -3.5111 -4.9073 -2.6419 H 1 LGD 0.0708
127 H12 -4.0270 -7.3385 -2.7763 H 1 LGD 0.0175
128 H13 -2.3395 -7.7152 -3.0985 H 1 LGD 0.0175
129 H14 -2.7332 -8.2793 -0.8045 H 1 LGD 0.0467
130 H15 -1.7073 -6.8521 -0.8083 H 1 LGD 0.0467
131 H16 -3.7083 -5.4043 -0.2928 H 1 LGD 0.0469
132 H17 -4.7630 -6.8108 -0.4025 H 1 LGD 0.0469
133 H18 -4.3246 -6.3286 1.9647 H 1 LGD 0.0520
134 H19 -3.5734 -7.8744 1.5573 H 1 LGD 0.0520
135 H20 -2.7312 -4.3101 1.4888 H 1 LGD 0.3366
136 H21 -0.1987 -4.8029 2.9745 H 1 LGD 0.0749
137 H22 1.8090 -3.3816 1.9820 H 1 LGD 0.3235
138 H23 1.7448 -3.3378 -0.9715 H 1 LGD 0.1181
139 H24 3.9487 -4.9204 0.4717 H 1 LGD 0.0751
140 H25 2.5773 -5.6574 -0.3655 H 1 LGD 0.0751
141 H26 2.2351 -4.7086 -2.8296 H 1 LGD 0.3259
142 H27 3.7330 -4.7195 -3.7347 H 1 LGD 0.3259
143 H28 2.3040 -1.2941 -1.4927 H 1 LGD 0.3701
144 H29 3.8417 0.3277 0.4520 H 1 LGD 0.0984
145 H30 -1.7362 -2.8592 3.5209 H 1 LGD 0.0581
146 H31 -0.0849 -2.4068 3.1624 H 1 LGD 0.0581
147 H32 -1.1159 0.6058 -0.4398 H 1 LGD 0.3442
148 H33 0.3680 -0.6554 1.2457 H 1 LGD 0.1711
149 H34 -4.0700 -3.2145 1.9448 H 1 LGD 0.1142
150 H35 -6.0178 -2.6273 0.4896 H 1 LGD 0.1086
151 H36 -5.8082 -0.8262 -1.2244 H 1 LGD 0.1225
152 H37 -3.6423 0.4064 -1.4885 H 1 LGD 0.1399
153 H38 5.6618 -0.6111 -0.9212 H 1 LGD 0.0152
154 H39 4.8139 -0.2143 -2.4114 H 1 LGD 0.0152
155 H40 3.6766 2.6864 0.0236 H 1 LGD 0.3654
156 H41 1.0015 3.3609 -0.7969 H 1 LGD 0.1281
157 H42 1.5759 5.6605 -0.1877 H 1 LGD 0.0723
158 H43 4.2019 3.8598 -2.5287 H 1 LGD 0.3691
159 H44 2.7430 5.1872 -4.7872 H 1 LGD 0.0701
160 H45 4.5077 5.0502 -4.5897 H 1 LGD 0.0701
161 H46 1.7563 2.6348 -4.6509 H 1 LGD 0.3511
162 H47 2.8125 1.1380 -6.9485 H 1 LGD 0.0744
163 H48 4.5454 0.6691 -5.1444 H 1 LGD 0.0784
164 H49 3.2706 0.1017 -4.0812 H 1 LGD 0.0784
165 H50 2.7300 -1.7098 -5.8493 H 1 LGD 0.0712
166 H51 4.1602 -1.1834 -6.7332 H 1 LGD 0.0712
167 H52 4.1166 -2.2425 -3.8431 H 1 LGD 0.1247
168 H53 4.6292 -3.1620 -5.2717 H 1 LGD 0.1247
169 H54 6.3713 -1.5473 -5.6012 H 1 LGD 0.4534
170 H55 5.8926 -0.7002 -4.2711 H 1 LGD 0.4534
171 H56 1.1540 0.5105 -3.7459 H 1 LGD 0.3580
172 H57 -0.9255 -1.0935 -5.1527 H 1 LGD 0.0950
173 H58 -0.6461 1.7444 -2.8606 H 1 LGD 0.3447
174 H59 -0.2355 -0.7401 -2.1785 H 1 LGD 0.0604
175 H60 -1.4122 -1.8859 -2.8156 H 1 LGD 0.0604
176 H61 -3.5950 2.2005 -3.0290 H 1 LGD 0.0774
177 H62 -2.5845 3.5884 -4.8749 H 1 LGD 0.0435
178 H63 -3.2731 4.5997 -3.5893 H 1 LGD 0.0435
179 H64 -1.5150 4.3725 -3.6903 H 1 LGD 0.0435
180 H65 -4.2264 4.0810 -1.3878 H 1 LGD 0.3051
181 H66 -2.3867 4.2440 0.9271 H 1 LGD 0.1098
182 H67 -3.7887 6.2073 0.1830 H 1 LGD 0.0248
183 H68 -5.2434 5.3186 0.6423 H 1 LGD 0.0248
184 H69 -2.1462 2.3530 2.1221 H 1 LGD 0.3306
185 H70 -4.4839 1.4222 3.6133 H 1 LGD 0.0761
186 H71 -3.9194 0.2092 2.4437 H 1 LGD 0.0761
187 H72 -3.9006 0.4329 5.5590 H 1 LGD 0.3307
188 H73 -1.2814 -0.6092 6.2361 H 1 LGD 0.0796
189 H74 -3.3893 0.8383 7.9508 H 1 LGD 0.0425
190 H75 -3.4137 -0.8953 7.5732 H 1 LGD 0.0425
191 H76 -2.4306 -0.3277 9.6307 H 1 LGD 0.3933
192 H77 -2.6693 2.6851 5.9697 H 1 LGD 0.3734
193 H78 -0.8073 4.2584 7.3890 H 1 LGD 0.0688
194 H79 -2.4301 4.8305 4.8342 H 1 LGD 0.1095
195 H80 -0.7319 3.6263 3.7553 H 1 LGD 0.3477
196 H81 2.2377 4.0389 3.7759 H 1 LGD 0.1026
197 H82 1.4841 1.6068 4.4009 H 1 LGD 0.0973
198 H83 0.9079 1.4733 2.7404 H 1 LGD 0.0973
199 H84 3.7709 6.0608 -1.2120 H 1 LGD 0.0498
200 H85 3.9474 6.2583 0.5357 H 1 LGD 0.0498
201 H86 4.5271 4.7716 -0.2436 H 1 LGD 0.0498
202 H87 -3.0531 5.4921 7.7731 H 1 LGD 0.0268
203 H88 -3.9952 6.0523 6.3974 H 1 LGD 0.0268
204 H89 -0.6430 6.5176 4.9542 H 1 LGD 0.0242
205 H90 -2.1704 7.2714 5.4187 H 1 LGD 0.0242
206 H91 -0.9909 6.8266 6.6711 H 1 LGD 0.0242
207 H92 1.4535 -0.6502 3.4556 H 1 LGD 0.1468
208 H93 2.1163 -2.9188 4.1400 H 1 LGD 0.1145
209 H94 4.5150 -3.4946 4.4330 H 1 LGD 0.1086
210 H95 6.2586 -1.7778 4.0400 H 1 LGD 0.1138
211 H96 6.7959 0.3270 3.2015 H 1 LGD 0.4307
212 H97 5.6206 1.5284 2.7998 H 1 LGD 0.4307
213 H98 6.4882 -2.2269 -4.1013 H 1 LGD 0.4534
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 6 7 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 am
11 10 12 2
12 11 13 1
13 13 14 1
14 14 15 am
15 14 16 2
16 15 17 1
17 17 18 1
18 17 19 1
19 19 20 1
20 20 21 am
21 20 22 2
22 18 23 am
23 23 24 1
24 18 25 2
25 13 26 1
26 26 27 1
27 27 28 1
28 28 29 ar
29 29 30 1
30 30 31 1
31 27 31 2
32 28 32 ar
33 32 33 ar
34 33 34 ar
35 34 35 ar
36 29 35 ar
37 24 36 1
38 24 37 1
39 37 38 1
40 38 39 1
41 38 40 2
42 36 41 am
43 36 42 2
44 41 43 1
45 43 44 1
46 43 45 1
47 45 46 2
48 45 47 am
49 47 48 1
50 48 49 1
51 49 50 2
52 49 51 am
53 51 52 1
54 52 53 1
55 52 54 1
56 53 55 1
57 55 56 1
58 56 57 1
59 54 58 2
60 54 59 am
61 59 60 1
62 60 61 1
63 61 62 am
64 60 63 1
65 63 64 1
66 64 65 1
67 64 66 2
68 61 67 2
69 62 68 1
70 68 69 1
71 68 70 1
72 69 71 am
73 69 72 2
74 71 73 1
75 73 74 1
76 73 75 1
77 75 76 1
78 76 77 1
79 76 78 2
80 74 79 am
81 74 80 2
82 79 81 1
83 81 82 1
84 82 83 am
85 82 84 2
86 83 85 1
87 85 86 1
88 85 87 1
89 87 88 1
90 86 89 2
91 86 90 am
92 90 91 1
93 91 92 1
94 91 93 1
95 93 94 am
96 93 95 2
97 94 96 1
98 96 97 1
99 96 98 1
100 97 99 1
101 97 100 2
102 44 99 1
103 44 101 1
104 92 102 1
105 92 103 1
106 102 104 1
107 104 105 1
108 104 106 2
109 98 107 1
110 107 108 2
111 107 109 1
112 109 110 ar
113 110 111 ar
114 111 112 ar
115 112 113 ar
116 113 114 ar
117 109 114 ar
118 114 115 1
119 1 116 1
120 1 117 1
121 1 118 1
122 2 119 1
123 2 120 1
124 3 121 1
125 3 122 1
126 4 123 1
127 4 124 1
128 5 125 1
129 5 126 1
130 6 127 1
131 6 128 1
132 7 129 1
133 7 130 1
134 8 131 1
135 8 132 1
136 9 133 1
137 9 134 1
138 11 135 1
139 13 136 1
140 15 137 1
141 17 138 1
142 19 139 1
143 19 140 1
144 21 141 1
145 21 142 1
146 23 143 1
147 24 144 1
148 26 145 1
149 26 146 1
150 30 147 1
151 31 148 1
152 32 149 1
153 33 150 1
154 34 151 1
155 35 152 1
156 37 153 1
157 37 154 1
158 41 155 1
159 43 156 1
160 44 157 1
161 47 158 1
162 48 159 1
163 48 160 1
164 51 161 1
165 52 162 1
166 53 163 1
167 53 164 1
168 55 165 1
169 55 166 1
170 56 167 1
171 56 168 1
172 57 169 1
173 57 170 1
174 59 171 1
175 60 172 1
176 62 173 1
177 63 174 1
178 63 175 1
179 68 176 1
180 70 177 1
181 70 178 1
182 70 179 1
183 71 180 1
184 73 181 1
185 75 182 1
186 75 183 1
187 79 184 1
188 81 185 1
189 81 186 1
190 83 187 1
191 85 188 1
192 87 189 1
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195 90 192 1
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198 94 195 1
199 96 196 1
200 98 197 1
201 98 198 1
202 101 199 1
203 101 200 1
204 101 201 1
205 102 202 1
206 102 203 1
207 103 204 1
208 103 205 1
209 103 206 1
210 110 207 1
211 111 208 1
212 112 209 1
213 113 210 1
214 115 211 1
215 115 212 1
216 57 213 1