@COMMENT
LIGANDBOX_ID = D01080-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01080
NAME = Daptomycin_(JAN/USAN/INN)_Cubicin_(TN)_ABBR______DAP
MOLECULAR_FORMULA = C72H101N17O26
MOLECULAR_WEIGHT = 1620.693
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 25
NUM_OF_ACCEPTOR = 26
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 702.0200
HOMO = -0.5207
LUMO = 3.1049
mLOGPA = -10.359
mLOGD = -2.796
mLOGS = -1.362
@MOLECULE
D01080-03
213 216 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 3.7221 1.6508 5.3170 C.3 1 LGD -0.0841
2 C2 2.9603 0.7028 6.2677 C.3 1 LGD -0.0707
3 C3 2.4179 -0.5383 5.5242 C.3 1 LGD -0.0690
4 C4 1.5775 -1.4662 6.4333 C.3 1 LGD -0.0709
5 C5 0.9151 -2.6003 5.6171 C.3 1 LGD -0.0750
6 C6 -0.0273 -3.4816 6.4723 C.3 1 LGD -0.0799
7 C7 -0.8580 -4.4777 5.6233 C.3 1 LGD -0.0779
8 C8 -0.0007 -5.5890 4.9599 C.3 1 LGD -0.0714
9 C9 -0.8567 -6.6033 4.1607 C.3 1 LGD -0.1533
10 C10 -1.5850 -5.9485 2.9848 C.2 1 LGD 0.6662
11 N1 -0.8237 -5.4546 1.9360 N.am 1 LGD -0.6005
12 O1 -2.8001 -5.8515 2.9568 O.2 1 LGD -0.5973
13 C11 -1.4069 -4.6701 0.8361 C.3 1 LGD 0.0538
14 C12 -0.5207 -4.7702 -0.4123 C.2 1 LGD 0.6605
15 N2 0.7678 -4.2563 -0.3613 N.am 1 LGD -0.5969
16 O2 -0.9265 -5.2867 -1.4396 O.2 1 LGD -0.5709
17 C13 1.5924 -4.0857 -1.5656 C.3 1 LGD 0.0581
18 C14 2.4654 -2.8376 -1.3952 C.2 1 LGD 0.6430
19 C15 2.4405 -5.3541 -1.8297 C.3 1 LGD -0.1455
20 C16 3.2106 -5.2576 -3.1492 C.2 1 LGD 0.6699
21 N3 2.5221 -5.3277 -4.3394 N.am 1 LGD -0.6760
22 O3 4.4204 -5.1329 -3.1981 O.2 1 LGD -0.6738
23 N4 2.2042 -1.7414 -2.1987 N.am 1 LGD -0.5899
24 C17 2.8868 -0.4519 -2.0273 C.3 1 LGD 0.0740
25 O4 3.3616 -2.7864 -0.5703 O.2 1 LGD -0.6095
26 C18 -1.5916 -3.2015 1.2934 C.3 1 LGD -0.0050
27 C19 -2.0505 -2.3063 0.1748 C.ar 1 LGD -0.1953
28 C20 -3.3168 -2.2414 -0.5026 C.ar 1 LGD -0.0810
29 C21 -3.2510 -1.2256 -1.4024 C.ar 1 LGD -0.0184
30 N5 -2.0192 -0.6193 -1.3524 N.ar 1 LGD -0.1793
31 C22 -1.2569 -1.3010 -0.3846 C.ar 1 LGD -0.0598
32 C23 -4.4805 -3.0011 -0.3368 C.ar 1 LGD -0.0953
33 C24 -5.5925 -2.6811 -1.1439 C.ar 1 LGD -0.1700
34 C25 -5.5181 -1.6222 -2.0806 C.ar 1 LGD -0.1204
35 C26 -4.3310 -0.8742 -2.2179 C.ar 1 LGD -0.1274
36 C27 1.9804 0.7103 -2.4773 C.2 1 LGD 0.6776
37 C28 4.2457 -0.4812 -2.7779 C.3 1 LGD -0.2267
38 C29 4.9583 0.8736 -2.7709 C.2 1 LGD 0.9230
39 O5 5.0814 1.4410 -3.8423 O.co2 1 LGD -0.8368
40 O6 5.3398 1.2980 -1.6949 O.co2 1 LGD -0.8368
41 N6 2.2689 1.9679 -1.9731 N.am 1 LGD -0.5851
42 O7 1.0232 0.5557 -3.2206 O.2 1 LGD -0.6464
43 C30 1.5073 3.1798 -2.3102 C.3 1 LGD 0.0304
44 C31 2.0279 4.3440 -1.4146 C.3 1 LGD 0.1633
45 C32 1.6262 3.5084 -3.8039 C.2 1 LGD 0.6598
46 O8 0.6339 3.6402 -4.5004 O.2 1 LGD -0.6175
47 N7 2.8855 3.6360 -4.3746 N.am 1 LGD -0.5934
48 C33 3.0745 4.0081 -5.7864 C.3 1 LGD 0.0530
49 C34 3.0518 2.7718 -6.6894 C.2 1 LGD 0.6618
50 O9 3.9623 2.5249 -7.4622 O.2 1 LGD -0.6426
51 N8 1.9640 1.9163 -6.6013 N.am 1 LGD -0.5866
52 C35 1.9460 0.5821 -7.2180 C.3 1 LGD 0.0715
53 C36 2.8954 -0.3515 -6.4185 C.3 1 LGD -0.1181
54 C37 0.5055 0.0516 -7.2172 C.2 1 LGD 0.6504
55 C38 3.0519 -1.7582 -7.0458 C.3 1 LGD -0.0985
56 C39 3.8591 -2.7104 -6.1360 C.3 1 LGD 0.0999
57 N9 5.2201 -2.1838 -5.9198 N.4 1 LGD -0.8238
58 O10 -0.1148 -0.1386 -8.2492 O.2 1 LGD -0.6205
59 N10 -0.0804 -0.2148 -5.9906 N.am 1 LGD -0.5675
60 C40 -1.3842 -0.8738 -5.8353 C.3 1 LGD 0.0753
61 C41 -2.4597 0.1874 -5.5713 C.2 1 LGD 0.6599
62 N11 -2.1805 1.1879 -4.6515 N.am 1 LGD -0.5866
63 C42 -1.2825 -1.8800 -4.6614 C.3 1 LGD -0.2376
64 C43 -0.2258 -2.9593 -4.9138 C.2 1 LGD 0.9504
65 O11 0.9252 -2.6847 -4.6236 O.co2 1 LGD -0.8635
66 O12 -0.6037 -4.0279 -5.3577 O.co2 1 LGD -0.8635
67 O13 -3.5277 0.1799 -6.1595 O.2 1 LGD -0.6290
68 C44 -3.1493 2.2261 -4.2688 C.3 1 LGD 0.0509
69 C45 -2.9623 2.5981 -2.7906 C.2 1 LGD 0.6497
70 C46 -2.9948 3.4573 -5.1888 C.3 1 LGD -0.1046
71 N12 -3.9474 3.3526 -2.1732 N.am 1 LGD -0.5710
72 O14 -1.9958 2.2242 -2.1459 O.2 1 LGD -0.6247
73 C47 -3.9056 3.6690 -0.7390 C.3 1 LGD 0.0688
74 C48 -4.4800 2.4910 0.0651 C.2 1 LGD 0.6786
75 C49 -4.6604 4.9958 -0.4827 C.3 1 LGD -0.2261
76 C50 -4.4588 5.4886 0.9534 C.2 1 LGD 0.9320
77 O15 -5.4137 5.4307 1.7068 O.co2 1 LGD -0.8195
78 O16 -3.3557 5.9211 1.2382 O.co2 1 LGD -0.8195
79 N13 -3.6055 1.7096 0.8047 N.am 1 LGD -0.5781
80 O17 -5.6685 2.2138 0.0485 O.2 1 LGD -0.6093
81 C51 -4.0756 0.5944 1.6386 C.3 1 LGD 0.0503
82 C52 -3.0082 0.1616 2.6461 C.2 1 LGD 0.6706
83 N14 -3.4151 -0.1042 3.9437 N.am 1 LGD -0.5999
84 O18 -1.8274 0.0812 2.3532 O.2 1 LGD -0.6307
85 C53 -2.4690 -0.2108 5.0699 C.3 1 LGD 0.0666
86 C54 -1.6349 1.0783 5.2056 C.2 1 LGD 0.6540
87 C55 -3.2995 -0.4688 6.3482 C.3 1 LGD 0.1149
88 O19 -2.4505 -0.6621 7.4759 O.3 1 LGD -0.5996
89 O20 -0.4801 1.0643 5.5911 O.2 1 LGD -0.6262
90 N15 -2.2298 2.2739 4.8377 N.am 1 LGD -0.5852
91 C56 -1.6055 3.6002 4.9435 C.3 1 LGD 0.0771
92 C57 -2.6318 4.6692 4.4327 C.3 1 LGD -0.0596
93 C58 -0.2789 3.6256 4.1569 C.2 1 LGD 0.6776
94 N16 -0.3112 3.3767 2.7925 N.am 1 LGD -0.5866
95 O21 0.7879 3.8399 4.7083 O.2 1 LGD -0.6316
96 C59 0.8983 3.1039 1.9972 C.3 1 LGD 0.0969
97 C60 0.7031 3.6579 0.5745 C.2 1 LGD 0.6244
98 C61 1.1229 1.5633 2.0001 C.3 1 LGD -0.1935
99 O22 1.8991 3.9760 -0.0167 O.3 1 LGD -0.4291
100 O23 -0.3927 3.8012 0.0590 O.2 1 LGD -0.4876
101 C62 1.3385 5.7079 -1.6716 C.3 1 LGD -0.1240
102 C63 -3.9191 4.7583 5.3213 C.3 1 LGD -0.2061
103 C64 -1.9785 6.0739 4.3390 C.3 1 LGD -0.0757
104 C65 -4.7975 3.4920 5.3471 C.2 1 LGD 0.9365
105 O24 -5.0068 2.9222 4.2891 O.co2 1 LGD -0.8513
106 O25 -5.1929 3.1142 6.4357 O.co2 1 LGD -0.8513
107 C66 2.5258 1.0756 1.5899 C.2 1 LGD 0.5859
108 O26 3.3069 1.8092 1.0097 O.2 1 LGD -0.5396
109 C67 2.9017 -0.3525 1.9470 C.ar 1 LGD -0.2373
110 C68 1.8889 -1.3277 2.0950 C.ar 1 LGD -0.0384
111 C69 2.2049 -2.6501 2.4420 C.ar 1 LGD -0.2208
112 C70 3.5364 -3.0240 2.6510 C.ar 1 LGD -0.0546
113 C71 4.5553 -2.0745 2.5050 C.ar 1 LGD -0.2275
114 C72 4.2497 -0.7485 2.1529 C.ar 1 LGD 0.2490
115 N17 5.2940 0.1357 2.0314 N.pl3 1 LGD -0.8604
116 H1 4.5843 1.1423 4.8676 H 1 LGD 0.0305
117 H2 3.0684 2.0007 4.5082 H 1 LGD 0.0305
118 H3 4.0883 2.5293 5.8626 H 1 LGD 0.0305
119 H4 3.6266 0.3856 7.0799 H 1 LGD 0.0332
120 H5 2.1283 1.2510 6.7281 H 1 LGD 0.0332
121 H6 1.7969 -0.2034 4.6860 H 1 LGD 0.0434
122 H7 3.2546 -1.1051 5.0964 H 1 LGD 0.0434
123 H8 2.2166 -1.8961 7.2152 H 1 LGD 0.0373
124 H9 0.8004 -0.8803 6.9403 H 1 LGD 0.0373
125 H10 0.3454 -2.1624 4.7872 H 1 LGD 0.0401
126 H11 1.7024 -3.2236 5.1765 H 1 LGD 0.0401
127 H12 0.5563 -4.0286 7.2239 H 1 LGD 0.0386
128 H13 -0.7211 -2.8347 7.0233 H 1 LGD 0.0386
129 H14 -1.6105 -4.9469 6.2700 H 1 LGD 0.0454
130 H15 -1.4106 -3.9206 4.8554 H 1 LGD 0.0454
131 H16 0.7448 -5.1432 4.2902 H 1 LGD 0.0384
132 H17 0.5557 -6.1281 5.7372 H 1 LGD 0.0384
133 H18 -0.2074 -7.3959 3.7677 H 1 LGD 0.0529
134 H19 -1.5904 -7.0830 4.8215 H 1 LGD 0.0529
135 H20 0.1763 -5.5889 1.9641 H 1 LGD 0.3068
136 H21 -2.3868 -5.0837 0.5651 H 1 LGD 0.1073
137 H22 1.1026 -3.8719 0.5105 H 1 LGD 0.3248
138 H23 0.9350 -3.9143 -2.4261 H 1 LGD 0.1218
139 H24 3.1467 -5.5236 -1.0064 H 1 LGD 0.0724
140 H25 1.7841 -6.2322 -1.8806 H 1 LGD 0.0724
141 H26 1.5115 -5.3504 -4.3429 H 1 LGD 0.3245
142 H27 3.0304 -5.2978 -5.2091 H 1 LGD 0.3245
143 H28 1.5222 -1.8375 -2.9425 H 1 LGD 0.3743
144 H29 3.0888 -0.2901 -0.9608 H 1 LGD 0.0974
145 H30 -2.3221 -3.1637 2.1115 H 1 LGD 0.0564
146 H31 -0.6530 -2.8224 1.7092 H 1 LGD 0.0564
147 H32 -1.7310 0.1951 -1.8789 H 1 LGD 0.3424
148 H33 -0.2419 -1.0058 -0.1553 H 1 LGD 0.1664
149 H34 -4.5283 -3.8058 0.3910 H 1 LGD 0.1260
150 H35 -6.5128 -3.2490 -1.0434 H 1 LGD 0.1083
151 H36 -6.3812 -1.3820 -2.6947 H 1 LGD 0.1184
152 H37 -4.2638 -0.0574 -2.9275 H 1 LGD 0.1369
153 H38 4.9095 -1.2250 -2.3192 H 1 LGD 0.0131
154 H39 4.0920 -0.7983 -3.8139 H 1 LGD 0.0131
155 H40 3.0478 2.0518 -1.3310 H 1 LGD 0.3661
156 H41 0.4449 3.0039 -2.1107 H 1 LGD 0.1359
157 H42 3.0967 4.4777 -1.6271 H 1 LGD 0.0785
158 H43 3.6970 3.3984 -3.8188 H 1 LGD 0.3635
159 H44 2.2830 4.6942 -6.1134 H 1 LGD 0.0694
160 H45 4.0422 4.5105 -5.9075 H 1 LGD 0.0694
161 H46 1.2045 2.1832 -5.9887 H 1 LGD 0.3534
162 H47 2.2846 0.6512 -8.2600 H 1 LGD 0.0753
163 H48 3.8854 0.1148 -6.3434 H 1 LGD 0.0772
164 H49 2.5214 -0.4514 -5.3930 H 1 LGD 0.0772
165 H50 2.0633 -2.2025 -7.2175 H 1 LGD 0.0738
166 H51 3.5385 -1.6761 -8.0262 H 1 LGD 0.0738
167 H52 3.3555 -2.8112 -5.1717 H 1 LGD 0.1221
168 H53 3.9244 -3.6959 -6.6014 H 1 LGD 0.1221
169 H54 5.6960 -2.0923 -6.8062 H 1 LGD 0.4544
170 H55 5.1655 -1.2756 -5.4779 H 1 LGD 0.4544
171 H56 0.4644 -0.0380 -5.1562 H 1 LGD 0.3535
172 H57 -1.6559 -1.4176 -6.7493 H 1 LGD 0.1013
173 H58 -1.2745 1.1890 -4.2031 H 1 LGD 0.3462
174 H59 -1.0216 -1.3525 -3.7370 H 1 LGD 0.0595
175 H60 -2.2552 -2.3607 -4.4939 H 1 LGD 0.0595
176 H61 -4.1708 1.8391 -4.3741 H 1 LGD 0.0753
177 H62 -3.1378 3.1764 -6.2399 H 1 LGD 0.0433
178 H63 -3.7388 4.2243 -4.9398 H 1 LGD 0.0433
179 H64 -1.9980 3.9024 -5.0850 H 1 LGD 0.0433
180 H65 -4.7415 3.6574 -2.7164 H 1 LGD 0.3063
181 H66 -2.8644 3.8122 -0.4284 H 1 LGD 0.1080
182 H67 -4.2876 5.7712 -1.1647 H 1 LGD 0.0250
183 H68 -5.7322 4.8756 -0.6896 H 1 LGD 0.0250
184 H69 -2.6164 1.9094 0.7617 H 1 LGD 0.3273
185 H70 -4.9672 0.9041 2.1992 H 1 LGD 0.0781
186 H71 -4.3450 -0.2664 1.0165 H 1 LGD 0.0781
187 H72 -4.4029 -0.0573 4.1494 H 1 LGD 0.3319
188 H73 -1.7862 -1.0521 4.8965 H 1 LGD 0.0782
189 H74 -3.9668 0.3850 6.5251 H 1 LGD 0.0453
190 H75 -3.9240 -1.3589 6.1999 H 1 LGD 0.0453
191 H76 -3.0186 -0.6880 8.2656 H 1 LGD 0.3944
192 H77 -3.1821 2.2293 4.4961 H 1 LGD 0.3747
193 H78 -1.3707 3.8030 5.9964 H 1 LGD 0.0690
194 H79 -2.9443 4.3908 3.4176 H 1 LGD 0.1102
195 H80 -1.2120 3.2775 2.3476 H 1 LGD 0.3496
196 H81 1.7667 3.6056 2.4436 H 1 LGD 0.1014
197 H82 0.9255 1.1779 3.0080 H 1 LGD 0.0965
198 H83 0.3884 1.0951 1.3339 H 1 LGD 0.0965
199 H84 1.5917 6.0824 -2.6713 H 1 LGD 0.0528
200 H85 0.2466 5.6366 -1.6083 H 1 LGD 0.0528
201 H86 1.6825 6.4529 -0.9429 H 1 LGD 0.0528
202 H87 -3.6322 5.0140 6.3500 H 1 LGD 0.0272
203 H88 -4.5523 5.5796 4.9616 H 1 LGD 0.0272
204 H89 -1.1741 6.0917 3.5932 H 1 LGD 0.0239
205 H90 -2.7167 6.8277 4.0369 H 1 LGD 0.0239
206 H91 -1.5584 6.3766 5.3066 H 1 LGD 0.0239
207 H92 0.8461 -1.0683 1.9515 H 1 LGD 0.1521
208 H93 1.4169 -3.3863 2.5609 H 1 LGD 0.1116
209 H94 3.7787 -4.0469 2.9241 H 1 LGD 0.1061
210 H95 5.5873 -2.3720 2.6676 H 1 LGD 0.1142
211 H96 6.2192 -0.2551 1.9373 H 1 LGD 0.4298
212 H97 5.0969 0.9962 1.5360 H 1 LGD 0.4298
213 H98 5.7374 -2.8124 -5.3207 H 1 LGD 0.4544
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 6 7 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 am
11 10 12 2
12 11 13 1
13 13 14 1
14 14 15 am
15 14 16 2
16 15 17 1
17 17 18 1
18 17 19 1
19 19 20 1
20 20 21 am
21 20 22 2
22 18 23 am
23 23 24 1
24 18 25 2
25 13 26 1
26 26 27 1
27 27 28 1
28 28 29 ar
29 29 30 1
30 30 31 1
31 27 31 2
32 28 32 ar
33 32 33 ar
34 33 34 ar
35 34 35 ar
36 29 35 ar
37 24 36 1
38 24 37 1
39 37 38 1
40 38 39 1
41 38 40 2
42 36 41 am
43 36 42 2
44 41 43 1
45 43 44 1
46 43 45 1
47 45 46 2
48 45 47 am
49 47 48 1
50 48 49 1
51 49 50 2
52 49 51 am
53 51 52 1
54 52 53 1
55 52 54 1
56 53 55 1
57 55 56 1
58 56 57 1
59 54 58 2
60 54 59 am
61 59 60 1
62 60 61 1
63 61 62 am
64 60 63 1
65 63 64 1
66 64 65 1
67 64 66 2
68 61 67 2
69 62 68 1
70 68 69 1
71 68 70 1
72 69 71 am
73 69 72 2
74 71 73 1
75 73 74 1
76 73 75 1
77 75 76 1
78 76 77 1
79 76 78 2
80 74 79 am
81 74 80 2
82 79 81 1
83 81 82 1
84 82 83 am
85 82 84 2
86 83 85 1
87 85 86 1
88 85 87 1
89 87 88 1
90 86 89 2
91 86 90 am
92 90 91 1
93 91 92 1
94 91 93 1
95 93 94 am
96 93 95 2
97 94 96 1
98 96 97 1
99 96 98 1
100 97 99 1
101 97 100 2
102 44 99 1
103 44 101 1
104 92 102 1
105 92 103 1
106 102 104 1
107 104 105 1
108 104 106 2
109 98 107 1
110 107 108 2
111 107 109 1
112 109 110 ar
113 110 111 ar
114 111 112 ar
115 112 113 ar
116 113 114 ar
117 109 114 ar
118 114 115 1
119 1 116 1
120 1 117 1
121 1 118 1
122 2 119 1
123 2 120 1
124 3 121 1
125 3 122 1
126 4 123 1
127 4 124 1
128 5 125 1
129 5 126 1
130 6 127 1
131 6 128 1
132 7 129 1
133 7 130 1
134 8 131 1
135 8 132 1
136 9 133 1
137 9 134 1
138 11 135 1
139 13 136 1
140 15 137 1
141 17 138 1
142 19 139 1
143 19 140 1
144 21 141 1
145 21 142 1
146 23 143 1
147 24 144 1
148 26 145 1
149 26 146 1
150 30 147 1
151 31 148 1
152 32 149 1
153 33 150 1
154 34 151 1
155 35 152 1
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158 41 155 1
159 43 156 1
160 44 157 1
161 47 158 1
162 48 159 1
163 48 160 1
164 51 161 1
165 52 162 1
166 53 163 1
167 53 164 1
168 55 165 1
169 55 166 1
170 56 167 1
171 56 168 1
172 57 169 1
173 57 170 1
174 59 171 1
175 60 172 1
176 62 173 1
177 63 174 1
178 63 175 1
179 68 176 1
180 70 177 1
181 70 178 1
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183 71 180 1
184 73 181 1
185 75 182 1
186 75 183 1
187 79 184 1
188 81 185 1
189 81 186 1
190 83 187 1
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195 90 192 1
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199 96 196 1
200 98 197 1
201 98 198 1
202 101 199 1
203 101 200 1
204 101 201 1
205 102 202 1
206 102 203 1
207 103 204 1
208 103 205 1
209 103 206 1
210 110 207 1
211 111 208 1
212 112 209 1
213 113 210 1
214 115 211 1
215 115 212 1
216 57 213 1