@COMMENT
LIGANDBOX_ID = D01080-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01080
NAME = Daptomycin_(JAN/USAN/INN)_Cubicin_(TN)_ABBR______DAP
MOLECULAR_FORMULA = C72H101N17O26
MOLECULAR_WEIGHT = 1620.693
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 25
NUM_OF_ACCEPTOR = 26
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 702.0200
HOMO = -0.5207
LUMO = 3.1049
mLOGPA = -10.359
mLOGD = -2.796
mLOGS = -1.362
@MOLECULE
D01080-04
213 216 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -5.3230 2.4406 -3.2084 C.3 1 LGD -0.0847
2 C2 -4.4592 3.2253 -4.2190 C.3 1 LGD -0.0709
3 C3 -3.1200 2.5096 -4.5015 C.3 1 LGD -0.0712
4 C4 -2.2222 3.2786 -5.4988 C.3 1 LGD -0.0720
5 C5 -0.8334 2.6116 -5.6288 C.3 1 LGD -0.0765
6 C6 0.1317 3.4102 -6.5380 C.3 1 LGD -0.0799
7 C7 1.5803 2.8585 -6.5110 C.3 1 LGD -0.0774
8 C8 1.7217 1.4598 -7.1703 C.3 1 LGD -0.0713
9 C9 3.1820 0.9428 -7.1626 C.3 1 LGD -0.1538
10 C10 3.7156 0.7353 -5.7435 C.2 1 LGD 0.6663
11 N1 3.1366 -0.2548 -4.9632 N.am 1 LGD -0.5981
12 O1 4.6202 1.4177 -5.2931 O.2 1 LGD -0.6030
13 C11 3.4576 -0.4239 -3.5373 C.3 1 LGD 0.0535
14 C12 3.1594 -1.8616 -3.0902 C.2 1 LGD 0.6591
15 N2 1.8446 -2.3100 -3.0920 N.am 1 LGD -0.5959
16 O2 4.0529 -2.6103 -2.7327 O.2 1 LGD -0.5683
17 C13 1.4542 -3.5910 -2.4847 C.3 1 LGD 0.0562
18 C14 0.0335 -3.4763 -1.9175 C.2 1 LGD 0.6417
19 C15 1.5744 -4.7394 -3.5166 C.3 1 LGD -0.1460
20 C16 1.3162 -6.1056 -2.8769 C.2 1 LGD 0.6691
21 N3 2.2168 -6.6038 -1.9622 N.am 1 LGD -0.6796
22 O3 0.3454 -6.7871 -3.1495 O.2 1 LGD -0.6692
23 N4 -0.1275 -3.5136 -0.5430 N.am 1 LGD -0.5911
24 C17 -1.4154 -3.2550 0.1172 C.3 1 LGD 0.0741
25 O4 -0.9404 -3.3480 -2.6391 O.2 1 LGD -0.6070
26 C18 2.6663 0.6147 -2.7053 C.3 1 LGD -0.0036
27 C19 2.8516 0.4196 -1.2250 C.ar 1 LGD -0.2033
28 C20 4.0037 0.6480 -0.3954 C.ar 1 LGD -0.0832
29 C21 3.6492 0.3715 0.8867 C.ar 1 LGD -0.0194
30 N5 2.3341 -0.0205 0.9467 N.ar 1 LGD -0.1753
31 C22 1.8353 -0.0147 -0.3698 C.ar 1 LGD -0.0563
32 C23 5.2876 1.1013 -0.7200 C.ar 1 LGD -0.1012
33 C24 6.2127 1.2594 0.3335 C.ar 1 LGD -0.1716
34 C25 5.8377 0.9692 1.6674 C.ar 1 LGD -0.1210
35 C26 4.5343 0.5185 1.9590 C.ar 1 LGD -0.1214
36 C27 -1.1910 -2.6294 1.5078 C.2 1 LGD 0.6756
37 C28 -2.2466 -4.5644 0.1770 C.3 1 LGD -0.2257
38 C29 -3.5552 -4.3905 0.9524 C.2 1 LGD 0.9240
39 O5 -3.6272 -4.9220 2.0469 O.co2 1 LGD -0.8354
40 O6 -4.4302 -3.7259 0.4273 O.co2 1 LGD -0.8354
41 N6 -2.2344 -1.9094 2.0690 N.am 1 LGD -0.5779
42 O7 -0.1298 -2.7205 2.1064 O.2 1 LGD -0.6571
43 C30 -2.1253 -1.2207 3.3655 C.3 1 LGD 0.0283
44 C31 -3.3314 -0.2457 3.5694 C.3 1 LGD 0.1616
45 C32 -1.9658 -2.2268 4.5178 C.2 1 LGD 0.6627
46 O8 -1.0790 -2.1000 5.3449 O.2 1 LGD -0.6266
47 N7 -2.8099 -3.3284 4.5879 N.am 1 LGD -0.5948
48 C33 -2.7428 -4.3118 5.6808 C.3 1 LGD 0.0527
49 C34 -1.7981 -5.4574 5.3156 C.2 1 LGD 0.6620
50 O9 -2.1519 -6.6237 5.3581 O.2 1 LGD -0.6469
51 N8 -0.5133 -5.1328 4.9115 N.am 1 LGD -0.5865
52 C35 0.4040 -6.1052 4.3009 C.3 1 LGD 0.0712
53 C36 -0.0840 -6.4220 2.8606 C.3 1 LGD -0.1159
54 C37 1.8162 -5.5069 4.2971 C.2 1 LGD 0.6517
55 C38 0.7546 -7.5149 2.1537 C.3 1 LGD -0.1003
56 C39 0.3155 -7.7239 0.6879 C.3 1 LGD 0.1009
57 N9 -1.0792 -8.2021 0.6359 N.4 1 LGD -0.8227
58 O10 2.7394 -6.0214 4.9044 O.2 1 LGD -0.6236
59 N10 2.0151 -4.3424 3.5739 N.am 1 LGD -0.5661
60 C40 3.3335 -3.7343 3.3532 C.3 1 LGD 0.0750
61 C41 3.5123 -2.5408 4.3029 C.2 1 LGD 0.6594
62 N11 2.4701 -1.6320 4.4242 N.am 1 LGD -0.5858
63 C42 3.4189 -3.2996 1.8686 C.3 1 LGD -0.2378
64 C43 3.2923 -4.4871 0.9083 C.2 1 LGD 0.9499
65 O11 2.1655 -4.8578 0.6287 O.co2 1 LGD -0.8618
66 O12 4.3196 -4.9647 0.4634 O.co2 1 LGD -0.8618
67 O13 4.5300 -2.3896 4.9570 O.2 1 LGD -0.6308
68 C44 2.5627 -0.3959 5.2190 C.3 1 LGD 0.0518
69 C45 1.7917 0.7347 4.5196 C.2 1 LGD 0.6502
70 C46 2.0352 -0.6449 6.6493 C.3 1 LGD -0.1041
71 N12 1.9481 2.0324 4.9839 N.am 1 LGD -0.5710
72 O14 1.0774 0.5248 3.5529 O.2 1 LGD -0.6191
73 C47 1.3855 3.1869 4.2674 C.3 1 LGD 0.0726
74 C48 2.2778 3.5208 3.0608 C.2 1 LGD 0.6884
75 C49 1.2239 4.3858 5.2355 C.3 1 LGD -0.2257
76 C50 0.4636 5.5519 4.5862 C.2 1 LGD 0.9296
77 O15 1.0515 6.2062 3.7425 O.co2 1 LGD -0.8179
78 O16 -0.6734 5.7569 4.9702 O.co2 1 LGD -0.8179
79 N13 1.7601 3.3376 1.7890 N.am 1 LGD -0.5824
80 O17 3.4230 3.9228 3.1926 O.2 1 LGD -0.6301
81 C51 2.4929 3.7590 0.5886 C.3 1 LGD 0.0565
82 C52 1.5764 3.7936 -0.6346 C.2 1 LGD 0.6610
83 N14 1.6621 4.8936 -1.4726 N.am 1 LGD -0.6192
84 O18 0.7650 2.9143 -0.8683 O.2 1 LGD -0.5875
85 C53 0.6811 5.1598 -2.5390 C.3 1 LGD 0.0575
86 C54 -0.7375 5.3356 -1.9594 C.2 1 LGD 0.6475
87 C55 1.1403 6.4237 -3.3015 C.3 1 LGD 0.1278
88 O19 0.2914 6.6793 -4.4169 O.3 1 LGD -0.5822
89 O20 -1.7231 5.0089 -2.5958 O.2 1 LGD -0.5806
90 N15 -0.8800 5.8445 -0.6723 N.am 1 LGD -0.5905
91 C56 -2.1746 5.9686 0.0273 C.3 1 LGD 0.0699
92 C57 -1.9431 6.5377 1.4729 C.3 1 LGD -0.0559
93 C58 -2.8897 4.6043 0.0375 C.2 1 LGD 0.6933
94 N16 -2.3035 3.5612 0.7377 N.am 1 LGD -0.5697
95 O21 -3.9311 4.4202 -0.5704 O.2 1 LGD -0.5923
96 C59 -2.8344 2.1918 0.7262 C.3 1 LGD 0.1058
97 C60 -2.5310 1.5229 2.0769 C.2 1 LGD 0.6437
98 C61 -2.1799 1.4404 -0.4648 C.3 1 LGD -0.1913
99 O22 -3.4711 0.5853 2.3974 O.3 1 LGD -0.4153
100 O23 -1.5812 1.8209 2.7819 O.2 1 LGD -0.5035
101 C62 -4.6948 -0.9524 3.7647 C.3 1 LGD -0.1023
102 C63 -3.2791 6.8496 2.2211 C.3 1 LGD -0.2088
103 C64 -1.0730 7.8259 1.4431 C.3 1 LGD -0.0766
104 C65 -4.1087 5.6163 2.6140 C.2 1 LGD 0.9253
105 O24 -5.2575 5.5695 2.2108 O.co2 1 LGD -0.8345
106 O25 -3.5679 4.7692 3.3027 O.co2 1 LGD -0.8345
107 C66 -2.9019 0.1659 -0.9357 C.2 1 LGD 0.5832
108 O26 -3.7131 -0.4042 -0.2266 O.2 1 LGD -0.5299
109 C67 -2.5680 -0.3451 -2.3251 C.ar 1 LGD -0.2331
110 C68 -1.2976 -0.0738 -2.8807 C.ar 1 LGD -0.0434
111 C69 -0.9609 -0.5198 -4.1671 C.ar 1 LGD -0.2257
112 C70 -1.8901 -1.2399 -4.9260 C.ar 1 LGD -0.0573
113 C71 -3.1552 -1.5204 -4.3928 C.ar 1 LGD -0.2268
114 C72 -3.4981 -1.0835 -3.1015 C.ar 1 LGD 0.2521
115 N17 -4.7544 -1.3849 -2.6344 N.pl3 1 LGD -0.8560
116 H1 -5.5862 1.4523 -3.6058 H 1 LGD 0.0344
117 H2 -4.7862 2.2985 -2.2620 H 1 LGD 0.0344
118 H3 -6.2526 2.9828 -2.9950 H 1 LGD 0.0344
119 H4 -5.0173 3.3516 -5.1555 H 1 LGD 0.0329
120 H5 -4.2631 4.2293 -3.8210 H 1 LGD 0.0329
121 H6 -2.5794 2.3892 -3.5562 H 1 LGD 0.0442
122 H7 -3.3170 1.5024 -4.8902 H 1 LGD 0.0442
123 H8 -2.7091 3.3158 -6.4818 H 1 LGD 0.0352
124 H9 -2.0999 4.3156 -5.1616 H 1 LGD 0.0352
125 H10 -0.3872 2.5076 -4.6309 H 1 LGD 0.0413
126 H11 -0.9657 1.6006 -6.0321 H 1 LGD 0.0413
127 H12 -0.2464 3.4142 -7.5685 H 1 LGD 0.0360
128 H13 0.1527 4.4559 -6.2065 H 1 LGD 0.0360
129 H14 2.2352 3.5665 -7.0349 H 1 LGD 0.0419
130 H15 1.9301 2.8214 -5.4710 H 1 LGD 0.0419
131 H16 1.0822 0.7320 -6.6565 H 1 LGD 0.0406
132 H17 1.3685 1.5126 -8.2081 H 1 LGD 0.0406
133 H18 3.2310 -0.0158 -7.6944 H 1 LGD 0.0535
134 H19 3.8349 1.6445 -7.6977 H 1 LGD 0.0535
135 H20 2.4224 -0.8362 -5.3763 H 1 LGD 0.3088
136 H21 4.5313 -0.2593 -3.3794 H 1 LGD 0.1066
137 H22 1.1196 -1.6914 -3.4258 H 1 LGD 0.3256
138 H23 2.1262 -3.8016 -1.6448 H 1 LGD 0.1219
139 H24 0.8725 -4.5858 -4.3468 H 1 LGD 0.0723
140 H25 2.5855 -4.7487 -3.9429 H 1 LGD 0.0723
141 H26 2.9947 -6.0371 -1.6525 H 1 LGD 0.3244
142 H27 2.0670 -7.5183 -1.5664 H 1 LGD 0.3244
143 H28 0.6818 -3.7164 0.0331 H 1 LGD 0.3743
144 H29 -1.9789 -2.5182 -0.4684 H 1 LGD 0.0977
145 H30 2.9911 1.6262 -2.9802 H 1 LGD 0.0524
146 H31 1.6036 0.5589 -2.9616 H 1 LGD 0.0524
147 H32 1.8106 -0.2299 1.7868 H 1 LGD 0.3465
148 H33 0.8121 -0.2896 -0.5862 H 1 LGD 0.1696
149 H34 5.5610 1.3301 -1.7459 H 1 LGD 0.1242
150 H35 7.2182 1.6102 0.1200 H 1 LGD 0.1065
151 H36 6.5564 1.0983 2.4715 H 1 LGD 0.1194
152 H37 4.2330 0.2998 2.9773 H 1 LGD 0.1399
153 H38 -2.4858 -4.9002 -0.8402 H 1 LGD 0.0119
154 H39 -1.6585 -5.3641 0.6399 H 1 LGD 0.0119
155 H40 -3.0918 -1.8146 1.5388 H 1 LGD 0.3664
156 H41 -1.2060 -0.6243 3.3561 H 1 LGD 0.1268
157 H42 -3.1420 0.3861 4.4470 H 1 LGD 0.0826
158 H43 -3.4543 -3.4921 3.8244 H 1 LGD 0.3697
159 H44 -2.3836 -3.8426 6.6054 H 1 LGD 0.0705
160 H45 -3.7416 -4.7266 5.8652 H 1 LGD 0.0705
161 H46 -0.2451 -4.1581 4.9388 H 1 LGD 0.3525
162 H47 0.4216 -7.0256 4.8988 H 1 LGD 0.0741
163 H48 -1.1320 -6.7441 2.8957 H 1 LGD 0.0778
164 H49 -0.0610 -5.5046 2.2608 H 1 LGD 0.0778
165 H50 1.8145 -7.2309 2.1585 H 1 LGD 0.0756
166 H51 0.6761 -8.4606 2.7052 H 1 LGD 0.0756
167 H52 0.3957 -6.7811 0.1413 H 1 LGD 0.1204
168 H53 0.9651 -8.4614 0.2122 H 1 LGD 0.1204
169 H54 -1.1592 -9.0741 1.1398 H 1 LGD 0.4535
170 H55 -1.6890 -7.5165 1.0609 H 1 LGD 0.4535
171 H56 1.2238 -3.9517 3.0785 H 1 LGD 0.3554
172 H57 4.1344 -4.4563 3.5589 H 1 LGD 0.1016
173 H58 1.6219 -1.8020 3.9015 H 1 LGD 0.3456
174 H59 2.6193 -2.5859 1.6413 H 1 LGD 0.0581
175 H60 4.3714 -2.7864 1.6824 H 1 LGD 0.0581
176 H61 3.6095 -0.0733 5.2857 H 1 LGD 0.0738
177 H62 2.5945 -1.4554 7.1334 H 1 LGD 0.0444
178 H63 2.1446 0.2561 7.2657 H 1 LGD 0.0444
179 H64 0.9740 -0.9206 6.6344 H 1 LGD 0.0444
180 H65 2.5293 2.1959 5.7926 H 1 LGD 0.3053
181 H66 0.3891 2.9289 3.8906 H 1 LGD 0.1150
182 H67 0.6749 4.0614 6.1298 H 1 LGD 0.0273
183 H68 2.2053 4.7408 5.5754 H 1 LGD 0.0273
184 H69 0.8464 2.9186 1.6891 H 1 LGD 0.3411
185 H70 2.8978 4.7675 0.7422 H 1 LGD 0.0652
186 H71 3.3307 3.0832 0.3869 H 1 LGD 0.0652
187 H72 2.3798 5.5798 -1.2904 H 1 LGD 0.3077
188 H73 0.6625 4.3076 -3.2308 H 1 LGD 0.0942
189 H74 1.1326 7.2839 -2.6199 H 1 LGD 0.0210
190 H75 2.1707 6.2783 -3.6502 H 1 LGD 0.0210
191 H76 0.6063 7.4945 -4.8449 H 1 LGD 0.3910
192 H77 -0.0420 6.1048 -0.1744 H 1 LGD 0.3180
193 H78 -2.8073 6.6703 -0.5315 H 1 LGD 0.0721
194 H79 -1.3879 5.7955 2.0619 H 1 LGD 0.1058
195 H80 -1.4791 3.7547 1.2863 H 1 LGD 0.3375
196 H81 -3.9244 2.2165 0.5963 H 1 LGD 0.1176
197 H82 -2.1232 2.1207 -1.3230 H 1 LGD 0.0842
198 H83 -1.1483 1.1788 -0.2015 H 1 LGD 0.0842
199 H84 -4.7447 -1.4485 4.7414 H 1 LGD 0.0502
200 H85 -5.5126 -0.2216 3.7273 H 1 LGD 0.0502
201 H86 -4.8730 -1.7015 2.9825 H 1 LGD 0.0502
202 H87 -3.0596 7.3931 3.1493 H 1 LGD 0.0201
203 H88 -3.8953 7.5202 1.6075 H 1 LGD 0.0201
204 H89 -0.0637 7.6233 1.0639 H 1 LGD 0.0172
205 H90 -1.5324 8.5947 0.8087 H 1 LGD 0.0172
206 H91 -0.9579 8.2416 2.4523 H 1 LGD 0.0172
207 H92 -0.5615 0.4917 -2.3216 H 1 LGD 0.1426
208 H93 0.0183 -0.2998 -4.5804 H 1 LGD 0.1059
209 H94 -1.6310 -1.5813 -5.9240 H 1 LGD 0.1041
210 H95 -3.8715 -2.0805 -4.9872 H 1 LGD 0.1143
211 H96 -5.2606 -2.1148 -3.1124 H 1 LGD 0.4323
212 H97 -4.8942 -1.2963 -1.6357 H 1 LGD 0.4323
213 H98 -1.3568 -8.3419 -0.3258 H 1 LGD 0.4535
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 6 7 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 am
11 10 12 2
12 11 13 1
13 13 14 1
14 14 15 am
15 14 16 2
16 15 17 1
17 17 18 1
18 17 19 1
19 19 20 1
20 20 21 am
21 20 22 2
22 18 23 am
23 23 24 1
24 18 25 2
25 13 26 1
26 26 27 1
27 27 28 1
28 28 29 ar
29 29 30 1
30 30 31 1
31 27 31 2
32 28 32 ar
33 32 33 ar
34 33 34 ar
35 34 35 ar
36 29 35 ar
37 24 36 1
38 24 37 1
39 37 38 1
40 38 39 1
41 38 40 2
42 36 41 am
43 36 42 2
44 41 43 1
45 43 44 1
46 43 45 1
47 45 46 2
48 45 47 am
49 47 48 1
50 48 49 1
51 49 50 2
52 49 51 am
53 51 52 1
54 52 53 1
55 52 54 1
56 53 55 1
57 55 56 1
58 56 57 1
59 54 58 2
60 54 59 am
61 59 60 1
62 60 61 1
63 61 62 am
64 60 63 1
65 63 64 1
66 64 65 1
67 64 66 2
68 61 67 2
69 62 68 1
70 68 69 1
71 68 70 1
72 69 71 am
73 69 72 2
74 71 73 1
75 73 74 1
76 73 75 1
77 75 76 1
78 76 77 1
79 76 78 2
80 74 79 am
81 74 80 2
82 79 81 1
83 81 82 1
84 82 83 am
85 82 84 2
86 83 85 1
87 85 86 1
88 85 87 1
89 87 88 1
90 86 89 2
91 86 90 am
92 90 91 1
93 91 92 1
94 91 93 1
95 93 94 am
96 93 95 2
97 94 96 1
98 96 97 1
99 96 98 1
100 97 99 1
101 97 100 2
102 44 99 1
103 44 101 1
104 92 102 1
105 92 103 1
106 102 104 1
107 104 105 1
108 104 106 2
109 98 107 1
110 107 108 2
111 107 109 1
112 109 110 ar
113 110 111 ar
114 111 112 ar
115 112 113 ar
116 113 114 ar
117 109 114 ar
118 114 115 1
119 1 116 1
120 1 117 1
121 1 118 1
122 2 119 1
123 2 120 1
124 3 121 1
125 3 122 1
126 4 123 1
127 4 124 1
128 5 125 1
129 5 126 1
130 6 127 1
131 6 128 1
132 7 129 1
133 7 130 1
134 8 131 1
135 8 132 1
136 9 133 1
137 9 134 1
138 11 135 1
139 13 136 1
140 15 137 1
141 17 138 1
142 19 139 1
143 19 140 1
144 21 141 1
145 21 142 1
146 23 143 1
147 24 144 1
148 26 145 1
149 26 146 1
150 30 147 1
151 31 148 1
152 32 149 1
153 33 150 1
154 34 151 1
155 35 152 1
156 37 153 1
157 37 154 1
158 41 155 1
159 43 156 1
160 44 157 1
161 47 158 1
162 48 159 1
163 48 160 1
164 51 161 1
165 52 162 1
166 53 163 1
167 53 164 1
168 55 165 1
169 55 166 1
170 56 167 1
171 56 168 1
172 57 169 1
173 57 170 1
174 59 171 1
175 60 172 1
176 62 173 1
177 63 174 1
178 63 175 1
179 68 176 1
180 70 177 1
181 70 178 1
182 70 179 1
183 71 180 1
184 73 181 1
185 75 182 1
186 75 183 1
187 79 184 1
188 81 185 1
189 81 186 1
190 83 187 1
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192 87 189 1
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198 94 195 1
199 96 196 1
200 98 197 1
201 98 198 1
202 101 199 1
203 101 200 1
204 101 201 1
205 102 202 1
206 102 203 1
207 103 204 1
208 103 205 1
209 103 206 1
210 110 207 1
211 111 208 1
212 112 209 1
213 113 210 1
214 115 211 1
215 115 212 1
216 57 213 1