@COMMENT
LIGANDBOX_ID = D01844-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-01
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 25.4120 -14.0520 -4.7100 C.3 1 LGD 0.0976
2 C2 25.8240 -15.3010 -3.8630 C.3 1 LGD 0.1045
3 C3 26.0420 -14.9540 -2.3610 C.3 1 LGD 0.2505
4 C4 24.8280 -14.1420 -1.8350 C.3 1 LGD 0.3096
5 O1 24.6640 -12.9590 -2.6450 O.3 1 LGD -0.4113
6 C5 24.3000 -13.1910 -4.0290 C.3 1 LGD 0.1390
7 O2 25.0590 -13.7150 -0.4750 O.3 1 LGD -0.3128
8 C6 24.0300 -13.9670 0.5200 C.3 1 LGD 0.0792
9 C7 22.6560 -13.3920 0.0840 C.3 1 LGD 0.0832
10 O3 22.7590 -12.0130 -0.2730 O.3 1 LGD -0.6045
11 C8 23.9370 -15.4970 0.8320 C.3 1 LGD 0.0351
12 O4 22.5860 -15.8370 1.2720 O.3 1 LGD -0.4601
13 C9 21.8600 -14.8600 2.0660 C.3 1 LGD 0.3469
14 C10 21.5850 -13.5940 1.1990 C.3 1 LGD 0.1370
15 O5 24.3610 -16.4950 5.7030 O.3 1 LGD -0.5858
16 C11 24.0100 -15.2450 5.0790 C.3 1 LGD 0.1999
17 C12 22.6980 -15.4860 4.2750 C.3 1 LGD 0.1244
18 O6 22.6460 -14.4950 3.2220 O.3 1 LGD -0.3960
19 C13 23.8870 -14.1380 6.1630 C.3 1 LGD 0.2314
20 C14 22.5850 -14.3350 6.9740 C.3 1 LGD 0.3119
21 O7 21.4740 -14.3050 6.0590 O.3 1 LGD -0.4043
22 C15 21.3940 -15.4210 5.1400 C.3 1 LGD 0.1426
23 O8 22.4130 -13.2590 7.9130 O.3 1 LGD -0.2945
24 C16 21.5720 -13.5760 9.0510 C.3 1 LGD 0.1079
25 C17 22.4280 -14.3910 10.0730 C.3 1 LGD 0.0967
26 O9 21.5970 -14.7680 11.1750 O.3 1 LGD -0.6242
27 C18 21.0440 -12.2340 9.6860 C.3 1 LGD 0.0576
28 O10 21.8640 -11.8810 10.8380 O.3 1 LGD -0.5154
29 C19 23.2750 -12.0250 10.5950 C.3 1 LGD 0.3246
30 C20 23.6280 -13.5340 10.5860 C.3 1 LGD 0.1658
31 O11 25.6800 -8.1760 12.2980 O.3 1 LGD -0.6268
32 C21 25.2580 -9.5160 12.5610 C.3 1 LGD 0.1206
33 C22 24.7390 -10.1830 11.2490 C.3 1 LGD 0.1225
34 O12 24.0230 -11.3790 11.6370 O.3 1 LGD -0.4478
35 C23 26.4420 -10.3080 13.1870 C.3 1 LGD 0.2804
36 C24 27.5330 -10.5930 12.1160 C.3 1 LGD 0.3164
37 O13 26.9260 -11.3050 11.0150 O.3 1 LGD -0.3439
38 C25 25.9080 -10.5870 10.2770 C.3 1 LGD 0.1264
39 O14 24.8230 -16.3150 -3.9710 O.3 1 LGD -0.5779
40 C26 22.8610 -13.7690 -4.1150 C.3 1 LGD 0.1504
41 O15 20.2990 -13.7150 0.5880 O.3 1 LGD -0.6564
42 C27 21.1100 -16.7320 5.9240 C.3 1 LGD 0.1264
43 O16 24.7460 -13.6680 9.6840 O.3 1 LGD -0.5081
44 C28 26.5330 -9.4160 9.4820 C.3 1 LGD 0.1481
45 O17 26.5630 -13.2340 -4.9300 O.3 1 LGD -0.6416
46 N1 27.3000 -14.2080 -2.1980 N.pl3 1 LGD -0.8740
47 C29 25.0010 -15.9830 1.8360 C.2 1 LGD 0.8604
48 N2 23.9050 -12.8270 5.4990 N.pl3 1 LGD -0.8524
49 O18 28.5500 -11.4360 12.6920 O.3 1 LGD -0.3547
50 N3 25.9460 -11.5660 13.7660 N.pl3 1 LGD -0.8468
51 C30 20.9460 -11.0500 8.6940 C.2 1 LGD 0.9038
52 C31 29.7070 -11.6330 11.8590 C.3 1 LGD 0.1415
53 S1 28.3290 -14.4050 -0.8210 S.O2 1 LGD 1.1945
54 O19 28.0760 -15.7470 -0.3250 O.co2 1 LGD -0.6367
55 O20 27.6760 -13.3410 0.2270 O.co2 1 LGD -0.6367
56 O21 29.6320 -13.9180 -1.2380 O.co2 1 LGD -0.6367
57 O22 22.0000 -12.8940 -3.3680 O.3 1 LGD -0.5035
58 S2 20.4450 -13.3170 -3.1900 S.O2 1 LGD 1.3313
59 O23 20.3930 -14.6480 -2.6090 O.co2 1 LGD -0.6718
60 O24 19.7410 -12.9750 -4.4130 O.co2 1 LGD -0.6718
61 O25 20.1220 -12.2030 -2.0440 O.co2 1 LGD -0.6718
62 O26 25.4950 -8.8740 8.6530 O.3 1 LGD -0.4559
63 S3 25.8630 -7.6740 7.6260 S.O2 1 LGD 1.3110
64 O27 25.6630 -6.4090 8.3120 O.co2 1 LGD -0.6865
65 O28 24.6120 -7.9460 6.6170 O.co2 1 LGD -0.6865
66 O29 27.1090 -8.0050 6.9560 O.co2 1 LGD -0.6865
67 S4 25.8650 -14.8140 9.9590 S.O2 1 LGD 1.3573
68 O30 20.0580 -16.4790 6.8710 O.3 1 LGD -0.5146
69 S5 19.8500 -17.5720 8.0520 S.O2 1 LGD 1.3741
70 O31 19.6040 -18.8650 7.4370 O.co2 1 LGD -0.7138
71 O32 18.4490 -16.9480 8.6000 O.co2 1 LGD -0.7138
72 O33 20.8950 -17.3700 9.0410 O.co2 1 LGD -0.7138
73 O34 26.5850 -14.0750 11.2260 O.co2 1 LGD -0.6844
74 O35 26.7840 -14.8080 8.8350 O.co2 1 LGD -0.6844
75 O36 25.2200 -16.0310 10.4230 O.co2 1 LGD -0.6844
76 S6 25.9170 -16.8340 6.0410 S.O2 1 LGD 1.3710
77 O37 26.1550 -17.8450 4.7800 O.co2 1 LGD -0.6845
78 O38 25.9640 -17.6020 7.2730 O.co2 1 LGD -0.6845
79 O39 26.7250 -15.6430 5.8410 O.co2 1 LGD -0.6845
80 O40 20.2420 -11.3070 7.5650 O.co2 1 LGD -0.8366
81 O41 21.4480 -9.9580 8.8940 O.co2 1 LGD -0.8366
82 O42 25.9370 -15.3100 2.2250 O.co2 1 LGD -0.7789
83 O43 24.7560 -17.2150 2.3420 O.co2 1 LGD -0.7789
84 S7 24.8430 -11.5020 6.0910 S.O2 1 LGD 1.2424
85 S8 26.4120 -12.1020 15.3390 S.O2 1 LGD 1.2707
86 O44 23.7330 -10.7220 6.9920 O.co2 1 LGD -0.6688
87 O45 25.1210 -10.7020 4.9120 O.co2 1 LGD -0.6688
88 O46 25.8600 -12.0550 6.9690 O.co2 1 LGD -0.6688
89 O47 25.5590 -13.2440 15.6170 O.co2 1 LGD -0.7202
90 O48 26.4630 -10.8980 16.1500 O.co2 1 LGD -0.7202
91 O49 27.9430 -12.6020 15.0770 O.co2 1 LGD -0.7202
92 H1 25.0400 -14.3980 -5.6830 H 1 LGD -0.0128
93 H2 26.7670 -15.6970 -4.2650 H 1 LGD 0.0108
94 H3 26.1010 -15.8950 -1.8010 H 1 LGD 0.1200
95 H4 23.9290 -14.7660 -1.8910 H 1 LGD 0.0484
96 H5 24.2720 -12.2220 -4.5430 H 1 LGD 0.0314
97 H6 24.3170 -13.4490 1.4440 H 1 LGD 0.1792
98 H7 22.3220 -13.9640 -0.7900 H 1 LGD 0.0111
99 H8 23.5530 -11.9300 -0.8360 H 1 LGD 0.4034
100 H9 24.1310 -16.0600 -0.0880 H 1 LGD 0.0033
101 H10 20.9000 -15.2820 2.3840 H 1 LGD 0.0519
102 H11 21.5940 -12.7180 1.8610 H 1 LGD 0.0839
103 H12 24.7980 -14.9600 4.3750 H 1 LGD 0.1300
104 H13 22.7590 -16.4830 3.8210 H 1 LGD 0.0795
105 H14 24.7360 -14.2200 6.8510 H 1 LGD 0.1166
106 H15 22.6260 -15.2930 7.5040 H 1 LGD 0.0207
107 H16 20.5370 -15.2570 4.4760 H 1 LGD 0.0256
108 H17 20.7130 -14.1770 8.7240 H 1 LGD 0.0602
109 H18 22.8100 -15.3010 9.5960 H 1 LGD 0.1244
110 H19 21.4420 -13.9690 11.7130 H 1 LGD 0.3706
111 H20 20.0220 -12.4140 10.0400 H 1 LGD 0.0033
112 H21 23.5110 -11.5810 9.6210 H 1 LGD 0.1642
113 H22 23.9130 -13.8490 11.5990 H 1 LGD 0.0409
114 H23 24.8880 -7.6080 12.2960 H 1 LGD 0.3747
115 H24 24.4360 -9.4900 13.2880 H 1 LGD 0.0092
116 H25 24.0470 -9.4960 10.7440 H 1 LGD 0.0904
117 H26 26.8880 -9.6940 13.9790 H 1 LGD 0.0113
118 H27 27.9810 -9.6530 11.7730 H 1 LGD -0.0209
119 H28 25.5150 -11.2620 9.5120 H 1 LGD 0.2065
120 H29 25.1060 -16.9410 -4.6630 H 1 LGD 0.3457
121 H30 22.5380 -13.8090 -5.1630 H 1 LGD 0.0179
122 H31 22.8190 -14.7830 -3.7030 H 1 LGD 0.0179
123 H32 20.2420 -13.0570 -0.1310 H 1 LGD 0.4300
124 H33 20.8100 -17.5280 5.2300 H 1 LGD 0.0383
125 H34 22.0130 -17.0640 6.4490 H 1 LGD 0.0383
126 H35 26.9310 -8.6410 10.1460 H 1 LGD 0.0079
127 H36 27.3500 -9.8020 8.8600 H 1 LGD 0.0079
128 H37 26.4170 -12.3900 -4.4650 H 1 LGD 0.4294
129 H38 27.5730 -13.5500 -2.9140 H 1 LGD 0.3701
130 H39 23.3620 -12.7010 4.6560 H 1 LGD 0.4070
131 H40 25.3590 -12.1630 13.1990 H 1 LGD 0.4944
132 H41 30.4360 -12.2690 12.3770 H 1 LGD 0.0024
133 H42 29.4240 -12.1240 10.9190 H 1 LGD 0.0024
134 H43 30.1830 -10.6720 11.6300 H 1 LGD 0.0024
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1