@COMMENT
LIGANDBOX_ID = D01844-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-02
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1241 -0.6279 -9.9083 C.3 1 LGD 0.1139
2 C2 1.5888 -1.8730 -9.0880 C.3 1 LGD 0.0848
3 C3 1.8338 -1.4897 -7.6023 C.3 1 LGD 0.2260
4 C4 0.5983 -0.7363 -7.0414 C.3 1 LGD 0.3128
5 O1 0.3668 0.4459 -7.8401 O.3 1 LGD -0.4279
6 C5 -0.0100 0.2004 -9.2191 C.3 1 LGD 0.1509
7 O2 0.8611 -0.3346 -5.6800 O.3 1 LGD -0.3417
8 C6 -0.1569 -0.5936 -4.6771 C.3 1 LGD 0.0964
9 C7 -1.4966 0.0933 -5.0475 C.3 1 LGD 0.0845
10 O3 -1.3127 1.4865 -5.2920 O.3 1 LGD -0.6058
11 C8 -0.3444 -2.1382 -4.4681 C.3 1 LGD -0.0043
12 O4 -1.7103 -2.4215 -4.0336 O.3 1 LGD -0.4663
13 C9 -2.3520 -1.4609 -3.1543 C.3 1 LGD 0.3428
14 C10 -2.5692 -0.1288 -3.9386 C.3 1 LGD 0.1327
15 O5 0.0638 -3.2662 0.5509 O.3 1 LGD -0.6227
16 C11 -0.1977 -2.0190 -0.1303 C.3 1 LGD 0.2154
17 C12 -1.4925 -2.2296 -0.9794 C.3 1 LGD 0.1223
18 O6 -1.5183 -1.2031 -1.9998 O.3 1 LGD -0.3959
19 C13 -0.3430 -0.8763 0.9236 C.3 1 LGD 0.2469
20 C14 -1.6657 -1.0595 1.7120 C.3 1 LGD 0.3121
21 O7 -2.7606 -1.0484 0.7723 O.3 1 LGD -0.4324
22 C15 -2.8135 -2.1718 -0.1377 C.3 1 LGD 0.1453
23 O8 -1.8432 0.0310 2.6339 O.3 1 LGD -0.3143
24 C16 -2.7148 -0.2314 3.7587 C.3 1 LGD 0.1035
25 C17 -1.9378 -1.0995 4.7981 C.3 1 LGD 0.1019
26 O9 -2.8153 -1.4041 5.8846 O.3 1 LGD -0.6362
27 C18 -3.1518 1.1429 4.3897 C.3 1 LGD 0.0228
28 O10 -2.2488 1.5138 5.4756 O.3 1 LGD -0.5053
29 C19 -0.8634 1.2081 5.2289 C.3 1 LGD 0.3190
30 C20 -0.6930 -0.3298 5.3418 C.3 1 LGD 0.1688
31 O11 1.4068 5.1137 6.9700 O.3 1 LGD -0.6707
32 C21 1.0832 3.7390 7.1927 C.3 1 LGD 0.1157
33 C22 0.5863 3.0820 5.8666 C.3 1 LGD 0.1153
34 O12 -0.0412 1.8327 6.2300 O.3 1 LGD -0.4110
35 C23 2.3251 3.0019 7.7863 C.3 1 LGD 0.2942
36 C24 3.4107 2.7848 6.6927 C.3 1 LGD 0.3265
37 O13 2.8147 2.0875 5.5742 O.3 1 LGD -0.3884
38 C25 1.7596 2.7818 4.8662 C.3 1 LGD 0.1285
39 O14 0.6191 -2.9221 -9.1595 O.3 1 LGD -0.6479
40 C26 -1.4333 -0.4223 -9.2789 C.3 1 LGD 0.1695
41 O15 -3.8605 -0.1301 -4.5511 O.3 1 LGD -0.6459
42 C27 -3.1171 -3.4776 0.6473 C.3 1 LGD 0.1515
43 O16 0.4602 -0.6797 4.5502 O.3 1 LGD -0.5316
44 C28 2.3504 4.0240 4.1447 C.3 1 LGD 0.1621
45 O17 0.7573 -1.0116 -11.2331 O.3 1 LGD -0.6609
46 N1 3.0394 -0.6516 -7.5097 N.pl3 1 LGD -0.8821
47 C29 0.7026 -2.7958 -3.5400 C.2 1 LGD 0.9162
48 N2 -0.3182 0.4265 0.2379 N.pl3 1 LGD -0.8742
49 O18 4.4743 1.9754 7.2308 O.3 1 LGD -0.3843
50 N3 1.9280 1.7176 8.3825 N.pl3 1 LGD -0.8739
51 C30 -3.3254 2.2796 3.3558 C.2 1 LGD 0.9484
52 C31 5.6210 1.8562 6.3736 C.3 1 LGD 0.1344
53 S1 4.5328 -1.2482 -6.8863 S.O2 1 LGD 1.4171
54 O19 4.4272 -2.6789 -7.1177 O.co2 1 LGD -0.7204
55 O20 4.3880 -0.7966 -5.5146 O.co2 1 LGD -0.7204
56 O21 5.4550 -0.4785 -7.7024 O.co2 1 LGD -0.7204
57 O22 -2.3181 0.4098 -8.5076 O.3 1 LGD -0.5674
58 S2 -3.8754 -0.0347 -8.3647 S.O2 1 LGD 1.5413
59 O23 -3.8248 -1.4194 -7.9267 O.co2 1 LGD -0.7336
60 O24 -4.4187 0.1434 -9.7008 O.co2 1 LGD -0.7336
61 O25 -4.4078 0.8853 -7.3745 O.co2 1 LGD -0.7336
62 O26 1.2948 4.6995 3.4403 O.3 1 LGD -0.5131
63 S3 1.6476 6.1147 2.7188 S.O2 1 LGD 1.5522
64 O27 1.9054 7.0195 3.8270 O.co2 1 LGD -0.7611
65 O28 0.4524 6.4355 1.9583 O.co2 1 LGD -0.7611
66 O29 2.8189 5.8339 1.9049 O.co2 1 LGD -0.7611
67 S4 1.6620 -1.5126 5.2655 S.O2 1 LGD 1.5396
68 O30 -4.2985 -3.2660 1.4433 O.3 1 LGD -0.5759
69 S5 -4.7248 -4.4187 2.5083 S.O2 1 LGD 1.5491
70 O31 -4.8167 -5.6324 1.7135 O.co2 1 LGD -0.7598
71 O32 -5.9961 -3.9549 3.0373 O.co2 1 LGD -0.7598
72 O33 -3.6428 -4.4276 3.4780 O.co2 1 LGD -0.7598
73 O34 1.9946 -0.7357 6.4487 O.co2 1 LGD -0.7359
74 O35 2.7123 -1.5482 4.2634 O.co2 1 LGD -0.7359
75 O36 1.0684 -2.8053 5.5620 O.co2 1 LGD -0.7359
76 S6 1.5668 -3.6849 1.0266 S.O2 1 LGD 1.5388
77 O37 1.9142 -4.7804 0.1379 O.co2 1 LGD -0.7286
78 O38 1.3839 -4.0928 2.4080 O.co2 1 LGD -0.7286
79 O39 2.3877 -2.4989 0.8526 O.co2 1 LGD -0.7286
80 O40 -4.2197 2.1427 2.5376 O.co2 1 LGD -0.8378
81 O41 -2.6110 3.2633 3.4547 O.co2 1 LGD -0.8378
82 O42 1.7183 -2.1699 -3.2920 O.co2 1 LGD -0.7905
83 O43 0.4271 -3.8904 -3.0794 O.co2 1 LGD -0.7905
84 S7 0.7883 1.6783 0.6643 S.O2 1 LGD 1.4263
85 S8 1.8286 1.5061 10.0861 S.O2 1 LGD 1.4342
86 O44 0.1336 2.1622 1.8650 O.co2 1 LGD -0.7243
87 O45 0.6774 2.5112 -0.5200 O.co2 1 LGD -0.7243
88 O46 2.0152 0.9320 0.8790 O.co2 1 LGD -0.7243
89 O47 1.2379 0.1814 10.1472 O.co2 1 LGD -0.7640
90 O48 1.0082 2.6468 10.4554 O.co2 1 LGD -0.7640
91 O49 3.2362 1.6235 10.4249 O.co2 1 LGD -0.7640
92 H1 1.9896 0.0426 -9.9819 H 1 LGD 0.0702
93 H2 2.5320 -2.2381 -9.5144 H 1 LGD 0.0215
94 H3 1.9721 -2.4037 -7.0111 H 1 LGD 0.1140
95 H4 -0.2806 -1.3885 -7.0789 H 1 LGD 0.0546
96 H5 -0.0640 1.1679 -9.7338 H 1 LGD 0.0358
97 H6 0.1827 -0.1594 -3.7274 H 1 LGD 0.1798
98 H7 -1.8676 -0.3823 -5.9636 H 1 LGD 0.0102
99 H8 -0.7197 1.5564 -6.0622 H 1 LGD 0.3998
100 H9 -0.2119 -2.6415 -5.4325 H 1 LGD -0.0077
101 H10 -3.3234 -1.8505 -2.8317 H 1 LGD 0.0577
102 H11 -2.5103 0.6997 -3.2207 H 1 LGD 0.0949
103 H12 0.6330 -1.7928 -0.8115 H 1 LGD 0.1190
104 H13 -1.4293 -3.2118 -1.4637 H 1 LGD 0.0681
105 H14 0.4899 -0.9311 1.6355 H 1 LGD 0.1311
106 H15 -1.6390 -2.0071 2.2592 H 1 LGD 0.0402
107 H16 -3.6581 -2.0181 -0.8187 H 1 LGD 0.0219
108 H17 -3.6096 -0.7663 3.4138 H 1 LGD 0.0488
109 H18 -1.6080 -2.0387 4.3365 H 1 LGD 0.1314
110 H19 -3.0317 -0.5558 6.3114 H 1 LGD 0.3765
111 H20 -4.1451 0.9933 4.8315 H 1 LGD -0.0095
112 H21 -0.5863 1.5522 4.2258 H 1 LGD 0.1602
113 H22 -0.5352 -0.6010 6.3941 H 1 LGD 0.0385
114 H23 0.8751 5.4219 6.2144 H 1 LGD 0.4231
115 H24 0.2662 3.6947 7.9243 H 1 LGD 0.0504
116 H25 -0.1590 3.7344 5.3925 H 1 LGD 0.0854
117 H26 2.7563 3.6326 8.5742 H 1 LGD 0.0031
118 H27 3.8194 3.7485 6.3698 H 1 LGD -0.0123
119 H28 1.3911 2.1166 4.0775 H 1 LGD 0.1932
120 H29 0.9954 -3.6953 -8.7031 H 1 LGD 0.4184
121 H30 -1.7744 -0.4660 -10.3208 H 1 LGD 0.0291
122 H31 -1.4278 -1.4408 -8.8757 H 1 LGD 0.0291
123 H32 -3.7774 0.3205 -5.4132 H 1 LGD 0.4213
124 H33 -3.2826 -4.2994 -0.0604 H 1 LGD 0.0489
125 H34 -2.2729 -3.7489 1.2913 H 1 LGD 0.0489
126 H35 2.8125 4.7113 4.8614 H 1 LGD 0.0152
127 H36 3.1223 3.6959 3.4372 H 1 LGD 0.0152
128 H37 0.3588 -1.8971 -11.1556 H 1 LGD 0.4053
129 H38 2.9733 0.3307 -7.7248 H 1 LGD 0.4018
130 H39 -1.0087 0.6253 -0.4685 H 1 LGD 0.3991
131 H40 1.7824 0.9125 7.7868 H 1 LGD 0.5149
132 H41 6.3927 1.2524 6.8666 H 1 LGD 0.0030
133 H42 5.3469 1.3678 5.4299 H 1 LGD 0.0030
134 H43 6.0379 2.8474 6.1546 H 1 LGD 0.0030
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1