@COMMENT
LIGANDBOX_ID = D01844-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-03
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0596 -0.6714 -9.9939 C.3 1 LGD 0.0951
2 C2 1.4182 -1.9426 -9.1547 C.3 1 LGD 0.1004
3 C3 1.7122 -1.6119 -7.6620 C.3 1 LGD 0.2154
4 C4 0.5399 -0.7618 -7.0984 C.3 1 LGD 0.3091
5 O1 0.3571 0.4174 -7.9176 O.3 1 LGD -0.4279
6 C5 -0.0450 0.1707 -9.2910 C.3 1 LGD 0.1222
7 O2 0.8317 -0.3480 -5.7465 O.3 1 LGD -0.3289
8 C6 -0.1677 -0.5955 -4.7213 C.3 1 LGD 0.0935
9 C7 -1.5154 0.0863 -5.0767 C.3 1 LGD 0.0842
10 O3 -1.3377 1.4786 -5.3299 O.3 1 LGD -0.6075
11 C8 -0.3460 -2.1375 -4.4904 C.3 1 LGD -0.0055
12 O4 -1.7103 -2.4229 -4.0537 O.3 1 LGD -0.4685
13 C9 -2.3512 -1.4640 -3.1721 C.3 1 LGD 0.3428
14 C10 -2.5758 -0.1334 -3.9558 C.3 1 LGD 0.1325
15 O5 0.0752 -3.2507 0.5389 O.3 1 LGD -0.6202
16 C11 -0.2006 -2.0047 -0.1385 C.3 1 LGD 0.2148
17 C12 -1.4895 -2.2265 -0.9951 C.3 1 LGD 0.1218
18 O6 -1.5158 -1.2027 -2.0188 O.3 1 LGD -0.3953
19 C13 -0.3573 -0.8711 0.9246 C.3 1 LGD 0.2452
20 C14 -1.6899 -1.0604 1.6953 C.3 1 LGD 0.3107
21 O7 -2.7739 -1.0490 0.7442 O.3 1 LGD -0.4297
22 C15 -2.8162 -2.1752 -0.1617 C.3 1 LGD 0.1444
23 O8 -1.8859 0.0206 2.6244 O.3 1 LGD -0.3136
24 C16 -2.7439 -0.2716 3.7523 C.3 1 LGD 0.1041
25 C17 -1.9373 -1.1293 4.7774 C.3 1 LGD 0.1004
26 O9 -2.7954 -1.4596 5.8719 O.3 1 LGD -0.6344
27 C18 -3.2103 1.0851 4.4015 C.3 1 LGD 0.0239
28 O10 -2.3083 1.4670 5.4847 O.3 1 LGD -0.5052
29 C19 -0.9179 1.2003 5.2221 C.3 1 LGD 0.3218
30 C20 -0.7050 -0.3331 5.3109 C.3 1 LGD 0.1661
31 O11 1.3805 5.0857 6.9739 O.3 1 LGD -0.6634
32 C21 1.0472 3.7129 7.1911 C.3 1 LGD 0.1168
33 C22 0.5444 3.0644 5.8619 C.3 1 LGD 0.1156
34 O12 -0.1031 1.8266 6.2277 O.3 1 LGD -0.4170
35 C23 2.2835 2.9643 7.7821 C.3 1 LGD 0.2963
36 C24 3.3645 2.7413 6.6864 C.3 1 LGD 0.3250
37 O13 2.7616 2.0411 5.5737 O.3 1 LGD -0.3839
38 C25 1.7143 2.7440 4.8624 C.3 1 LGD 0.1313
39 O14 2.5021 -2.6616 -9.7450 O.3 1 LGD -0.6546
40 C26 -1.4574 -0.4697 -9.3398 C.3 1 LGD 0.1741
41 O15 -3.8738 -0.1366 -4.5545 O.3 1 LGD -0.6467
42 C27 -3.1171 -3.4800 0.6268 C.3 1 LGD 0.1514
43 O16 0.4458 -0.6378 4.4978 O.3 1 LGD -0.5320
44 C28 2.3209 3.9746 4.1358 C.3 1 LGD 0.1605
45 O17 2.2075 0.1603 -10.1829 O.3 1 LGD -0.6410
46 N1 3.0074 -0.9161 -7.5387 N.pl3 1 LGD -0.8851
47 C29 0.7001 -2.7765 -3.5485 C.2 1 LGD 0.9219
48 N2 -0.3142 0.4401 0.2546 N.pl3 1 LGD -0.8735
49 O18 4.4283 1.9325 7.2244 O.3 1 LGD -0.3833
50 N3 1.8761 1.6811 8.3744 N.pl3 1 LGD -0.8716
51 C30 -3.4261 2.2306 3.3853 C.2 1 LGD 0.9508
52 C31 5.5756 1.8156 6.3683 C.3 1 LGD 0.1345
53 S1 4.2122 -1.3399 -6.3765 S.O2 1 LGD 1.4171
54 O19 3.8518 -2.6961 -6.0023 O.co2 1 LGD -0.7060
55 O20 3.9505 -0.2964 -5.4021 O.co2 1 LGD -0.7060
56 O21 5.3934 -1.1388 -7.1971 O.co2 1 LGD -0.7060
57 O22 -2.3433 0.3370 -8.5440 O.3 1 LGD -0.5608
58 S2 -3.8933 -0.1294 -8.3948 S.O2 1 LGD 1.5389
59 O23 -3.8194 -1.5155 -7.9650 O.co2 1 LGD -0.7303
60 O24 -4.4464 0.0484 -9.7270 O.co2 1 LGD -0.7303
61 O25 -4.4326 0.7778 -7.3966 O.co2 1 LGD -0.7303
62 O26 1.2880 4.6164 3.3697 O.3 1 LGD -0.5133
63 S3 1.6637 5.9941 2.5894 S.O2 1 LGD 1.5521
64 O27 1.8839 6.9550 3.6578 O.co2 1 LGD -0.7601
65 O28 0.4944 6.2728 1.7741 O.co2 1 LGD -0.7601
66 O29 2.8617 5.6756 1.8301 O.co2 1 LGD -0.7601
67 S4 1.6299 -1.5442 5.1492 S.O2 1 LGD 1.5343
68 O30 -4.2808 -3.2585 1.4463 O.3 1 LGD -0.5760
69 S5 -4.6741 -4.3892 2.5469 S.O2 1 LGD 1.5480
70 O31 -4.7764 -5.6212 1.7821 O.co2 1 LGD -0.7589
71 O32 -5.9356 -3.9213 3.0954 O.co2 1 LGD -0.7589
72 O33 -3.5694 -4.3691 3.4905 O.co2 1 LGD -0.7589
73 O34 1.9962 -0.8434 6.3697 O.co2 1 LGD -0.7338
74 O35 2.6681 -1.5521 4.1342 O.co2 1 LGD -0.7338
75 O36 1.0029 -2.8345 5.3798 O.co2 1 LGD -0.7338
76 S6 1.5978 -3.6832 0.9329 S.O2 1 LGD 1.5382
77 O37 1.9367 -4.6885 -0.0594 O.co2 1 LGD -0.7287
78 O38 1.4642 -4.2156 2.2772 O.co2 1 LGD -0.7287
79 O39 2.3933 -2.4708 0.8414 O.co2 1 LGD -0.7287
80 O40 -4.2944 2.0615 2.5453 O.co2 1 LGD -0.8394
81 O41 -2.7669 3.2487 3.5160 O.co2 1 LGD -0.8394
82 O42 1.6884 -2.1232 -3.2632 O.co2 1 LGD -0.7868
83 O43 0.4471 -3.8872 -3.1142 O.co2 1 LGD -0.7868
84 S7 0.7089 1.7278 0.7812 S.O2 1 LGD 1.4229
85 S8 1.8441 1.4424 10.0774 S.O2 1 LGD 1.4344
86 O44 -0.1404 2.2814 1.8188 O.co2 1 LGD -0.7221
87 O45 0.7875 2.4861 -0.4547 O.co2 1 LGD -0.7221
88 O46 1.8913 1.0241 1.2448 O.co2 1 LGD -0.7221
89 O47 1.1545 0.1667 10.1442 O.co2 1 LGD -0.7632
90 O48 1.1396 2.6358 10.5135 O.co2 1 LGD -0.7632
91 O49 3.2723 1.4351 10.3416 O.co2 1 LGD -0.7632
92 H1 0.6863 -0.9936 -10.9742 H 1 LGD 0.0071
93 H2 0.5345 -2.5925 -9.1689 H 1 LGD 0.0447
94 H3 1.7346 -2.5571 -7.1073 H 1 LGD 0.1258
95 H4 -0.3750 -1.3633 -7.1128 H 1 LGD 0.0429
96 H5 -0.1146 1.1351 -9.8101 H 1 LGD 0.0371
97 H6 0.1869 -0.1480 -3.7833 H 1 LGD 0.1834
98 H7 -1.8981 -0.3935 -5.9856 H 1 LGD 0.0046
99 H8 -0.7209 1.5473 -6.0810 H 1 LGD 0.3987
100 H9 -0.2083 -2.6527 -5.4479 H 1 LGD -0.0063
101 H10 -3.3207 -1.8567 -2.8479 H 1 LGD 0.0570
102 H11 -2.5098 0.6963 -3.2401 H 1 LGD 0.0960
103 H12 0.6294 -1.7655 -0.8160 H 1 LGD 0.1189
104 H13 -1.4161 -3.2094 -1.4770 H 1 LGD 0.0684
105 H14 0.4648 -0.9436 1.6468 H 1 LGD 0.1342
106 H15 -1.6659 -2.0118 2.2359 H 1 LGD 0.0390
107 H16 -3.6587 -2.0284 -0.8467 H 1 LGD 0.0201
108 H17 -3.6276 -0.8255 3.4088 H 1 LGD 0.0495
109 H18 -1.5916 -2.0580 4.3067 H 1 LGD 0.1343
110 H19 -3.0311 -0.6180 6.3017 H 1 LGD 0.3748
111 H20 -4.1953 0.9041 4.8502 H 1 LGD -0.0108
112 H21 -0.6581 1.5686 4.2227 H 1 LGD 0.1585
113 H22 -0.5218 -0.6113 6.3572 H 1 LGD 0.0390
114 H23 0.7246 5.4506 6.3538 H 1 LGD 0.4134
115 H24 0.2310 3.6718 7.9238 H 1 LGD 0.0424
116 H25 -0.1893 3.7280 5.3853 H 1 LGD 0.0830
117 H26 2.7218 3.5895 8.5706 H 1 LGD 0.0037
118 H27 3.7733 3.7032 6.3582 H 1 LGD -0.0114
119 H28 1.3382 2.0813 4.0740 H 1 LGD 0.1913
120 H29 3.3095 -2.3550 -9.2937 H 1 LGD 0.4362
121 H30 -1.8081 -0.5019 -10.3790 H 1 LGD 0.0195
122 H31 -1.4273 -1.4965 -8.9563 H 1 LGD 0.0195
123 H32 -3.7948 0.2840 -5.4321 H 1 LGD 0.4195
124 H33 -3.3033 -4.3003 -0.0776 H 1 LGD 0.0479
125 H34 -2.2628 -3.7589 1.2540 H 1 LGD 0.0479
126 H35 2.7452 4.6859 4.8527 H 1 LGD 0.0165
127 H36 3.1250 3.6367 3.4700 H 1 LGD 0.0165
128 H37 2.1596 0.8566 -9.5040 H 1 LGD 0.4320
129 H38 3.2221 -0.1681 -8.1776 H 1 LGD 0.3743
130 H39 -0.9469 0.6229 -0.5080 H 1 LGD 0.3972
131 H40 1.7001 0.8868 7.7737 H 1 LGD 0.5113
132 H41 6.3490 1.2154 6.8631 H 1 LGD 0.0035
133 H42 5.3033 1.3246 5.4254 H 1 LGD 0.0035
134 H43 5.9893 2.8078 6.1479 H 1 LGD 0.0035
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1