@COMMENT
LIGANDBOX_ID = D01844-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-04
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1302 -0.4659 -9.9737 C.3 1 LGD 0.1175
2 C2 1.5970 -1.7577 -9.2375 C.3 1 LGD 0.0983
3 C3 1.8354 -1.4930 -7.7195 C.3 1 LGD 0.2190
4 C4 0.6108 -0.7725 -7.0960 C.3 1 LGD 0.3150
5 O1 0.3801 0.4509 -7.8304 O.3 1 LGD -0.4489
6 C5 -0.0038 0.2930 -9.2178 C.3 1 LGD 0.1329
7 O2 0.9108 -0.4162 -5.7294 O.3 1 LGD -0.3617
8 C6 -0.1192 -0.6084 -4.7214 C.3 1 LGD 0.0980
9 C7 -1.4373 0.1174 -5.1011 C.3 1 LGD 0.0838
10 O3 -1.2098 1.4987 -5.3744 O.3 1 LGD -0.6076
11 C8 -0.3598 -2.1379 -4.4773 C.3 1 LGD -0.0077
12 O4 -1.7282 -2.3652 -4.0200 O.3 1 LGD -0.4631
13 C9 -2.3326 -1.3609 -3.1636 C.3 1 LGD 0.3433
14 C10 -2.5137 -0.0457 -3.9845 C.3 1 LGD 0.1322
15 O5 0.1201 -3.1311 0.5372 O.3 1 LGD -0.6174
16 C11 -0.1646 -1.8859 -0.1377 C.3 1 LGD 0.2165
17 C12 -1.4594 -2.1109 -0.9849 C.3 1 LGD 0.1201
18 O6 -1.4857 -1.0971 -2.0188 O.3 1 LGD -0.4009
19 C13 -0.3139 -0.7526 0.9274 C.3 1 LGD 0.2433
20 C14 -1.6435 -0.9389 1.7038 C.3 1 LGD 0.3111
21 O7 -2.7310 -0.9235 0.7571 O.3 1 LGD -0.4297
22 C15 -2.7818 -2.0513 -0.1459 C.3 1 LGD 0.1447
23 O8 -1.8347 0.1404 2.6361 O.3 1 LGD -0.3152
24 C16 -2.6906 -0.1558 3.7648 C.3 1 LGD 0.1041
25 C17 -1.8797 -1.0127 4.7871 C.3 1 LGD 0.1006
26 O9 -2.7346 -1.3476 5.8827 O.3 1 LGD -0.6328
27 C18 -3.1614 1.1979 4.4174 C.3 1 LGD 0.0233
28 O10 -2.2615 1.5787 5.5025 O.3 1 LGD -0.5048
29 C19 -0.8702 1.3198 5.2381 C.3 1 LGD 0.3226
30 C20 -0.6493 -0.2129 5.3194 C.3 1 LGD 0.1656
31 O11 1.4327 5.1990 6.9962 O.3 1 LGD -0.6613
32 C21 1.0982 3.8264 7.2119 C.3 1 LGD 0.1172
33 C22 0.5947 3.1800 5.8816 C.3 1 LGD 0.1156
34 O12 -0.0580 1.9448 6.2465 O.3 1 LGD -0.4178
35 C23 2.3335 3.0762 7.8025 C.3 1 LGD 0.2966
36 C24 3.4136 2.8524 6.7063 C.3 1 LGD 0.3245
37 O13 2.8097 2.1506 5.5954 O.3 1 LGD -0.3829
38 C25 1.7640 2.8543 4.8829 C.3 1 LGD 0.1315
39 O14 0.6483 -2.8101 -9.4216 O.3 1 LGD -0.6508
40 C26 -1.4132 -0.3478 -9.3156 C.3 1 LGD 0.1756
41 O15 -3.8064 -0.0289 -4.5945 O.3 1 LGD -0.6429
42 C27 -3.0819 -3.3537 0.6470 C.3 1 LGD 0.1512
43 O16 0.5001 -0.5076 4.5006 O.3 1 LGD -0.5329
44 C28 2.3732 4.0814 4.1533 C.3 1 LGD 0.1601
45 O17 2.2487 0.4108 -10.1162 O.3 1 LGD -0.6542
46 N1 2.1045 -2.7508 -7.0021 N.pl3 1 LGD -0.8846
47 C29 0.6762 -2.8092 -3.5462 C.2 1 LGD 0.9247
48 N2 -0.2696 0.5595 0.2589 N.pl3 1 LGD -0.8749
49 O18 4.4782 2.0448 7.2443 O.3 1 LGD -0.3823
50 N3 1.9239 1.7931 8.3937 N.pl3 1 LGD -0.8712
51 C30 -3.3799 2.3464 3.4051 C.2 1 LGD 0.9511
52 C31 5.6233 1.9235 6.3859 C.3 1 LGD 0.1347
53 S1 3.6547 -3.5089 -7.0240 S.O2 1 LGD 1.4283
54 O19 4.5339 -2.3627 -6.8706 O.co2 1 LGD -0.7334
55 O20 3.6181 -4.0872 -8.3557 O.co2 1 LGD -0.7334
56 O21 3.5043 -4.4222 -5.9060 O.co2 1 LGD -0.7334
57 O22 -2.3154 0.4604 -8.5392 O.3 1 LGD -0.5727
58 S2 -3.8733 0.0098 -8.4322 S.O2 1 LGD 1.5416
59 O23 -3.8262 -1.3821 -8.0178 O.co2 1 LGD -0.7326
60 O24 -4.3931 0.2109 -9.7744 O.co2 1 LGD -0.7326
61 O25 -4.4245 0.9115 -7.4354 O.co2 1 LGD -0.7326
62 O26 1.3466 4.7076 3.3661 O.3 1 LGD -0.5131
63 S3 1.7278 6.0699 2.5620 S.O2 1 LGD 1.5523
64 O27 1.9432 7.0508 3.6130 O.co2 1 LGD -0.7601
65 O28 0.5633 6.3340 1.7351 O.co2 1 LGD -0.7601
66 O29 2.9296 5.7360 1.8154 O.co2 1 LGD -0.7601
67 S4 1.6817 -1.4285 5.1357 S.O2 1 LGD 1.5340
68 O30 -4.2349 -3.1252 1.4796 O.3 1 LGD -0.5767
69 S5 -4.6181 -4.2507 2.5892 S.O2 1 LGD 1.5480
70 O31 -4.7306 -5.4857 1.8307 O.co2 1 LGD -0.7582
71 O32 -5.8728 -3.7784 3.1492 O.co2 1 LGD -0.7582
72 O33 -3.5032 -4.2283 3.5206 O.co2 1 LGD -0.7582
73 O34 2.0561 -0.7449 6.3634 O.co2 1 LGD -0.7333
74 O35 2.7159 -1.4287 4.1166 O.co2 1 LGD -0.7333
75 O36 1.0489 -2.7184 5.3526 O.co2 1 LGD -0.7333
76 S6 1.6468 -3.5559 0.9243 S.O2 1 LGD 1.5378
77 O37 1.9812 -4.5700 -0.0604 O.co2 1 LGD -0.7278
78 O38 1.5244 -4.0753 2.2746 O.co2 1 LGD -0.7278
79 O39 2.4386 -2.3424 0.8149 O.co2 1 LGD -0.7278
80 O40 -4.2433 2.1756 2.5604 O.co2 1 LGD -0.8397
81 O41 -2.7273 3.3678 3.5431 O.co2 1 LGD -0.8397
82 O42 1.7001 -2.1968 -3.2957 O.co2 1 LGD -0.7890
83 O43 0.3827 -3.8991 -3.0864 O.co2 1 LGD -0.7890
84 S7 0.7427 1.8522 0.7959 S.O2 1 LGD 1.4219
85 S8 1.9158 1.5435 10.0956 S.O2 1 LGD 1.4346
86 O44 -0.1397 2.4294 1.7922 O.co2 1 LGD -0.7224
87 O45 0.8637 2.5867 -0.4509 O.co2 1 LGD -0.7224
88 O46 1.9080 1.1560 1.3115 O.co2 1 LGD -0.7224
89 O47 1.1916 0.2873 10.1658 O.co2 1 LGD -0.7626
90 O48 1.2549 2.7531 10.5547 O.co2 1 LGD -0.7626
91 O49 3.3479 1.4912 10.3320 O.co2 1 LGD -0.7626
92 H1 0.7691 -0.7400 -10.9732 H 1 LGD 0.0261
93 H2 2.5489 -2.0732 -9.6828 H 1 LGD 0.0364
94 H3 2.7015 -0.8278 -7.6162 H 1 LGD 0.0694
95 H4 -0.2726 -1.4187 -7.1394 H 1 LGD 0.0629
96 H5 -0.0853 1.2910 -9.6670 H 1 LGD 0.0354
97 H6 0.2375 -0.1658 -3.7820 H 1 LGD 0.1740
98 H7 -1.8290 -0.3640 -6.0057 H 1 LGD 0.0127
99 H8 -0.6884 1.5353 -6.1970 H 1 LGD 0.3969
100 H9 -0.2587 -2.6622 -5.4343 H 1 LGD -0.0028
101 H10 -3.3142 -1.7105 -2.8269 H 1 LGD 0.0600
102 H11 -2.4314 0.8001 -3.2895 H 1 LGD 0.0927
103 H12 0.6590 -1.6457 -0.8229 H 1 LGD 0.1123
104 H13 -1.3924 -3.0985 -1.4571 H 1 LGD 0.0727
105 H14 0.5106 -0.8294 1.6463 H 1 LGD 0.1349
106 H15 -1.6194 -1.8912 2.2426 H 1 LGD 0.0407
107 H16 -3.6274 -1.9036 -0.8267 H 1 LGD 0.0207
108 H17 -3.5730 -0.7122 3.4218 H 1 LGD 0.0509
109 H18 -1.5318 -1.9395 4.3141 H 1 LGD 0.1357
110 H19 -2.9741 -0.5073 6.3129 H 1 LGD 0.3743
111 H20 -4.1462 1.0126 4.8647 H 1 LGD -0.0097
112 H21 -0.6129 1.6944 4.2401 H 1 LGD 0.1559
113 H22 -0.4604 -0.4945 6.3638 H 1 LGD 0.0396
114 H23 0.7489 5.5778 6.4159 H 1 LGD 0.4102
115 H24 0.2821 3.7853 7.9448 H 1 LGD 0.0410
116 H25 -0.1357 3.8465 5.4039 H 1 LGD 0.0823
117 H26 2.7732 3.7005 8.5910 H 1 LGD 0.0046
118 H27 3.8215 3.8141 6.3761 H 1 LGD -0.0119
119 H28 1.3867 2.1910 4.0954 H 1 LGD 0.1905
120 H29 0.9610 -3.5533 -8.8743 H 1 LGD 0.4466
121 H30 -1.7345 -0.3700 -10.3645 H 1 LGD 0.0333
122 H31 -1.4033 -1.3751 -8.9353 H 1 LGD 0.0333
123 H32 -3.7158 0.3973 -5.4680 H 1 LGD 0.4194
124 H33 -3.2805 -4.1735 -0.0545 H 1 LGD 0.0490
125 H34 -2.2218 -3.6370 1.2643 H 1 LGD 0.0490
126 H35 2.7828 4.8025 4.8689 H 1 LGD 0.0162
127 H36 3.1885 3.7416 3.5023 H 1 LGD 0.0162
128 H37 2.3552 0.8735 -9.2663 H 1 LGD 0.4354
129 H38 1.4142 -3.1164 -6.3643 H 1 LGD 0.4593
130 H39 -0.9055 0.7445 -0.5004 H 1 LGD 0.3966
131 H40 1.7351 1.0033 7.7912 H 1 LGD 0.5103
132 H41 6.3981 1.3262 6.8819 H 1 LGD 0.0035
133 H42 5.3485 1.4274 5.4465 H 1 LGD 0.0035
134 H43 6.0362 2.9146 6.1590 H 1 LGD 0.0035
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1