@COMMENT
LIGANDBOX_ID = D01844-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-05
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 6.8100 4.3247 -4.2544 C.3 1 LGD 0.0753
2 C2 7.1536 2.9702 -3.5620 C.3 1 LGD 0.1265
3 C3 7.2129 3.0968 -2.0117 C.3 1 LGD 0.2260
4 C4 5.9746 3.8460 -1.4350 C.3 1 LGD 0.3253
5 O1 5.7475 5.0863 -2.1586 O.3 1 LGD -0.4091
6 C5 5.5941 5.0501 -3.6071 C.3 1 LGD 0.1313
7 O2 4.7976 3.0055 -1.4974 O.3 1 LGD -0.4080
8 C6 4.2100 2.5095 -0.2644 C.3 1 LGD 0.1058
9 C7 5.2048 1.5803 0.4789 C.3 1 LGD 0.0765
10 O3 5.6028 0.4921 -0.3543 O.3 1 LGD -0.6312
11 C8 3.7064 3.6925 0.6391 C.3 1 LGD -0.0100
12 O4 3.7506 3.3044 2.0465 O.3 1 LGD -0.4719
13 C9 3.4621 1.9213 2.3752 C.3 1 LGD 0.3484
14 C10 4.6128 1.0341 1.8149 C.3 1 LGD 0.1181
15 O5 -1.2303 2.6809 1.7636 O.3 1 LGD -0.6241
16 C11 -0.1487 1.8265 1.3314 C.3 1 LGD 0.2159
17 C12 0.9922 1.9629 2.3915 C.3 1 LGD 0.1214
18 O6 2.2150 1.5031 1.7699 O.3 1 LGD -0.3954
19 C13 -0.6783 0.3638 1.1896 C.3 1 LGD 0.2459
20 C14 -0.9600 -0.2262 2.5959 C.3 1 LGD 0.3105
21 O7 0.2598 -0.1771 3.3652 O.3 1 LGD -0.4354
22 C15 0.7292 1.1487 3.7044 C.3 1 LGD 0.1456
23 O8 -1.3740 -1.5996 2.4813 O.3 1 LGD -0.3135
24 C16 -2.1549 -2.1138 3.5852 C.3 1 LGD 0.1038
25 C17 -3.6121 -1.5685 3.4581 C.3 1 LGD 0.1011
26 O9 -4.3722 -2.0331 4.5760 O.3 1 LGD -0.6355
27 C18 -2.1375 -3.6871 3.5290 C.3 1 LGD 0.0249
28 O10 -3.2951 -4.1825 2.7896 O.3 1 LGD -0.5057
29 C19 -3.6461 -3.3967 1.6350 C.3 1 LGD 0.3206
30 C20 -4.2768 -2.0724 2.1386 C.3 1 LGD 0.1675
31 O11 -4.8018 -6.7319 -1.6789 O.3 1 LGD -0.6663
32 C21 -5.3007 -5.7598 -0.7573 C.3 1 LGD 0.1159
33 C22 -4.1526 -4.7976 -0.3157 C.3 1 LGD 0.1154
34 O12 -4.6295 -4.0953 0.8524 O.3 1 LGD -0.4142
35 C23 -6.4958 -4.9928 -1.4063 C.3 1 LGD 0.2958
36 C24 -5.9871 -4.0036 -2.4938 C.3 1 LGD 0.3260
37 O13 -5.0051 -3.1224 -1.9003 O.3 1 LGD -0.3841
38 C25 -3.7871 -3.7428 -1.4216 C.3 1 LGD 0.1308
39 O14 6.2069 1.9674 -3.9338 O.3 1 LGD -0.5436
40 C26 4.2097 4.5061 -4.0515 C.3 1 LGD 0.2010
41 O15 5.6747 0.9416 2.7662 O.3 1 LGD -0.6478
42 C27 -0.2679 1.8317 4.6811 C.3 1 LGD 0.1512
43 O16 -4.0700 -1.0943 1.0999 O.3 1 LGD -0.5318
44 C28 -2.9832 -4.2991 -2.6280 C.3 1 LGD 0.1605
45 O17 7.9428 5.1928 -4.2030 O.3 1 LGD -0.6650
46 N1 8.4543 3.7892 -1.6283 N.pl3 1 LGD -0.9133
47 C29 2.3173 4.2488 0.2532 C.2 1 LGD 0.9213
48 N2 0.3126 -0.4510 0.4656 N.pl3 1 LGD -0.8735
49 O18 -7.0924 -3.2136 -2.9730 O.3 1 LGD -0.3839
50 N3 -7.2709 -4.2786 -0.3805 N.pl3 1 LGD -0.8722
51 C30 -0.8089 -4.2848 3.0100 C.2 1 LGD 0.9503
52 C31 -6.7886 -2.4005 -4.1174 C.3 1 LGD 0.1342
53 S1 9.2008 3.5859 -0.0852 S.O2 1 LGD 1.4315
54 O19 8.9789 2.1730 0.1686 O.co2 1 LGD -0.7325
55 O20 8.3827 4.4982 0.6934 O.co2 1 LGD -0.7325
56 O21 10.5444 4.0326 -0.4076 O.co2 1 LGD -0.7325
57 O22 3.1949 5.3995 -3.5599 O.3 1 LGD -0.5575
58 S2 1.7107 5.3093 -4.2216 S.O2 1 LGD 1.5307
59 O23 1.3750 3.8957 -4.1927 O.co2 1 LGD -0.7196
60 O24 1.8950 5.8394 -5.5629 O.co2 1 LGD -0.7196
61 O25 0.8894 6.1472 -3.3652 O.co2 1 LGD -0.7196
62 O26 -1.7531 -4.8651 -2.1456 O.3 1 LGD -0.5132
63 S3 -0.7935 -5.6239 -3.2187 S.O2 1 LGD 1.5524
64 O27 -1.5454 -6.8133 -3.5836 O.co2 1 LGD -0.7613
65 O28 0.4248 -5.8980 -2.4767 O.co2 1 LGD -0.7613
66 O29 -0.6312 -4.6746 -4.3076 O.co2 1 LGD -0.7613
67 S4 -5.3590 -0.2586 0.5624 S.O2 1 LGD 1.5340
68 O30 -0.5062 0.9396 5.7865 O.3 1 LGD -0.5789
69 S5 -1.6808 1.3228 6.8441 S.O2 1 LGD 1.5481
70 O31 -1.3446 2.6647 7.2908 O.co2 1 LGD -0.7589
71 O32 -1.5695 0.3057 7.8757 O.co2 1 LGD -0.7589
72 O33 -2.9036 1.2486 6.0628 O.co2 1 LGD -0.7589
73 O34 -6.3237 -1.2782 0.1822 O.co2 1 LGD -0.7328
74 O35 -4.8400 0.5136 -0.5523 O.co2 1 LGD -0.7328
75 O36 -5.7679 0.5368 1.7076 O.co2 1 LGD -0.7328
76 S6 -2.2638 3.3512 0.6946 S.O2 1 LGD 1.5334
77 O37 -1.8409 4.7396 0.6346 O.co2 1 LGD -0.7228
78 O38 -3.5632 3.1657 1.3156 O.co2 1 LGD -0.7228
79 O39 -2.0811 2.6219 -0.5485 O.co2 1 LGD -0.7228
80 O40 0.1871 -4.0705 3.6810 O.co2 1 LGD -0.8408
81 O41 -0.8415 -4.9774 2.0064 O.co2 1 LGD -0.8408
82 O42 1.8526 3.9242 -0.8249 O.co2 1 LGD -0.7804
83 O43 1.7498 4.9437 1.0792 O.co2 1 LGD -0.7804
84 S7 -0.0916 -1.4054 -0.9147 S.O2 1 LGD 1.4235
85 S8 -8.8179 -4.8313 0.1284 S.O2 1 LGD 1.4342
86 O44 -0.6370 -2.5672 -0.2382 O.co2 1 LGD -0.7222
87 O45 1.2321 -1.5574 -1.4924 O.co2 1 LGD -0.7222
88 O46 -1.0596 -0.5668 -1.5986 O.co2 1 LGD -0.7222
89 O47 -9.0474 -3.9483 1.2577 O.co2 1 LGD -0.7636
90 O48 -8.5376 -6.2325 0.3904 O.co2 1 LGD -0.7636
91 O49 -9.5751 -4.5688 -1.0830 O.co2 1 LGD -0.7636
92 H1 6.5775 4.1240 -5.3081 H 1 LGD 0.0231
93 H2 8.1404 2.6468 -3.9178 H 1 LGD -0.0141
94 H3 7.2406 2.0849 -1.5934 H 1 LGD 0.0984
95 H4 6.1760 4.0953 -0.3885 H 1 LGD 0.1126
96 H5 5.6231 6.0867 -3.9669 H 1 LGD 0.0310
97 H6 3.3378 1.8974 -0.5299 H 1 LGD 0.1803
98 H7 6.0896 2.1816 0.7251 H 1 LGD 0.0167
99 H8 5.4718 0.7770 -1.2767 H 1 LGD 0.4204
100 H9 4.3886 4.5422 0.5249 H 1 LGD 0.0154
101 H10 3.4095 1.8022 3.4627 H 1 LGD 0.0496
102 H11 4.2033 0.0313 1.6355 H 1 LGD 0.0945
103 H12 0.2313 2.1785 0.3635 H 1 LGD 0.1251
104 H13 1.0997 3.0236 2.6497 H 1 LGD 0.0724
105 H14 -1.6222 0.3760 0.6312 H 1 LGD 0.1370
106 H15 -1.7455 0.3573 3.0864 H 1 LGD 0.0412
107 H16 1.6739 1.0462 4.2502 H 1 LGD 0.0127
108 H17 -1.7105 -1.7857 4.5342 H 1 LGD 0.0470
109 H18 -3.6087 -0.4713 3.4646 H 1 LGD 0.1341
110 H19 -4.4132 -3.0030 4.4981 H 1 LGD 0.3750
111 H20 -2.2358 -4.0464 4.5613 H 1 LGD -0.0118
112 H21 -2.7461 -3.1943 1.0426 H 1 LGD 0.1596
113 H22 -5.3497 -2.2275 2.3135 H 1 LGD 0.0392
114 H23 -3.8829 -6.9308 -1.4256 H 1 LGD 0.4168
115 H24 -5.6663 -6.2888 0.1322 H 1 LGD 0.0453
116 H25 -3.2657 -5.3861 -0.0455 H 1 LGD 0.0828
117 H26 -7.1529 -5.7253 -1.8925 H 1 LGD 0.0031
118 H27 -5.5493 -4.5568 -3.3318 H 1 LGD -0.0118
119 H28 -3.1627 -2.9605 -0.9739 H 1 LGD 0.1916
120 H29 6.1082 2.0055 -4.9010 H 1 LGD 0.3701
121 H30 4.1839 4.4917 -5.1485 H 1 LGD 0.0400
122 H31 4.0291 3.4843 -3.7028 H 1 LGD 0.0400
123 H32 6.4961 0.8256 2.2561 H 1 LGD 0.3904
124 H33 0.1613 2.7740 5.0437 H 1 LGD 0.0507
125 H34 -1.2116 2.0618 4.1738 H 1 LGD 0.0507
126 H35 -3.5561 -5.0640 -3.1631 H 1 LGD 0.0169
127 H36 -2.7695 -3.4795 -3.3257 H 1 LGD 0.0169
128 H37 7.8215 5.7557 -3.4174 H 1 LGD 0.4250
129 H38 8.9314 4.3553 -2.3123 H 1 LGD 0.3832
130 H39 1.2555 -0.5048 0.8166 H 1 LGD 0.3927
131 H40 -6.9328 -3.3949 -0.0227 H 1 LGD 0.5128
132 H41 -7.6864 -1.8570 -4.4362 H 1 LGD 0.0038
133 H42 -6.0068 -1.6701 -3.8736 H 1 LGD 0.0038
134 H43 -6.4445 -3.0276 -4.9497 H 1 LGD 0.0038
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1