@COMMENT
LIGANDBOX_ID = D01844-06
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-06
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1090 -0.9244 -9.7904 C.3 1 LGD 0.1017
2 C2 1.5475 -2.1258 -8.8970 C.3 1 LGD 0.1134
3 C3 1.7205 -1.7118 -7.4061 C.3 1 LGD 0.2677
4 C4 0.4793 -0.9050 -6.9266 C.3 1 LGD 0.3166
5 O1 0.2686 0.2229 -7.8030 O.3 1 LGD -0.4414
6 C5 -0.0949 -0.1605 -9.1482 C.3 1 LGD 0.1346
7 O2 0.7115 -0.4240 -5.5841 O.3 1 LGD -0.3303
8 C6 -0.2869 -0.6924 -4.5653 C.3 1 LGD 0.0971
9 C7 -1.6413 -0.0390 -4.9346 C.3 1 LGD 0.0797
10 O3 -1.4855 1.3549 -5.1947 O.3 1 LGD -0.6325
11 C8 -0.4372 -2.2372 -4.3245 C.3 1 LGD -0.0109
12 O4 -1.8012 -2.5446 -3.9002 O.3 1 LGD -0.4765
13 C9 -2.4644 -1.5948 -3.0255 C.3 1 LGD 0.3544
14 C10 -2.6981 -0.2666 -3.8117 C.3 1 LGD 0.1176
15 O5 -0.0576 -3.3678 0.6986 O.3 1 LGD -0.6221
16 C11 -0.3289 -2.1221 0.0187 C.3 1 LGD 0.2164
17 C12 -1.6164 -2.3440 -0.8398 C.3 1 LGD 0.1206
18 O6 -1.6426 -1.3220 -1.8652 O.3 1 LGD -0.3883
19 C13 -0.4877 -0.9863 1.0783 C.3 1 LGD 0.2453
20 C14 -1.8189 -1.1775 1.8502 C.3 1 LGD 0.3108
21 O7 -2.9035 -1.1670 0.8990 O.3 1 LGD -0.4321
22 C15 -2.9445 -2.2920 -0.0090 C.3 1 LGD 0.1454
23 O8 -2.0131 -0.0951 2.7778 O.3 1 LGD -0.3124
24 C16 -2.8738 -0.3815 3.9051 C.3 1 LGD 0.1032
25 C17 -2.0742 -1.2425 4.9329 C.3 1 LGD 0.1011
26 O9 -2.9373 -1.5680 6.0248 O.3 1 LGD -0.6345
27 C18 -3.3325 0.9794 4.5505 C.3 1 LGD 0.0248
28 O10 -2.4288 1.3590 5.6332 O.3 1 LGD -0.5038
29 C19 -1.0398 1.0813 5.3744 C.3 1 LGD 0.3211
30 C20 -0.8390 -0.4535 5.4703 C.3 1 LGD 0.1667
31 O11 1.2525 4.9705 7.1254 O.3 1 LGD -0.6641
32 C21 0.9214 3.5972 7.3431 C.3 1 LGD 0.1166
33 C22 0.4206 2.9474 6.0141 C.3 1 LGD 0.1152
34 O12 -0.2223 1.7066 6.3786 O.3 1 LGD -0.4142
35 C23 2.1587 2.8511 7.9349 C.3 1 LGD 0.2959
36 C24 3.2415 2.6306 6.8402 C.3 1 LGD 0.3259
37 O13 2.6411 1.9318 5.7251 O.3 1 LGD -0.3856
38 C25 1.5919 2.6326 5.0146 C.3 1 LGD 0.1310
39 O14 0.5727 -3.1665 -8.9901 O.3 1 LGD -0.5889
40 C26 -0.4844 1.1230 -9.9218 C.3 1 LGD 0.1763
41 O15 -3.9923 -0.2724 -4.4158 O.3 1 LGD -0.6398
42 C27 -3.2477 -3.5977 0.7768 C.3 1 LGD 0.1526
43 O16 0.3137 -0.7713 4.6648 O.3 1 LGD -0.5335
44 C28 2.1947 3.8667 4.2904 C.3 1 LGD 0.1608
45 O17 2.2117 -0.0390 -10.0076 O.3 1 LGD -0.5923
46 N1 2.9563 -0.9236 -7.2628 N.pl3 1 LGD -0.8745
47 C29 0.6122 -2.8493 -3.3691 C.2 1 LGD 0.9193
48 N2 -0.4518 0.3224 0.4034 N.pl3 1 LGD -0.8733
49 O18 4.3051 1.8215 7.3784 O.3 1 LGD -0.3835
50 N3 1.7541 1.5670 8.5270 N.pl3 1 LGD -0.8726
51 C30 -3.5399 2.1224 3.5298 C.2 1 LGD 0.9499
52 C31 5.4542 1.7074 6.5242 C.3 1 LGD 0.1342
53 S1 4.2191 -1.3273 -6.1562 S.O2 1 LGD 1.4204
54 O19 4.0125 -2.7460 -5.9214 O.co2 1 LGD -0.7114
55 O20 3.8562 -0.4281 -5.0761 O.co2 1 LGD -0.7114
56 O21 5.3643 -0.9162 -6.9493 O.co2 1 LGD -0.7114
57 O22 -0.7274 0.7726 -11.2972 O.3 1 LGD -0.6077
58 S2 -1.0163 1.9698 -12.3597 S.O2 1 LGD 1.5577
59 O23 0.1901 2.7795 -12.3227 O.co2 1 LGD -0.7505
60 O24 -2.1954 2.6398 -11.8374 O.co2 1 LGD -0.7505
61 O25 -1.2306 1.2760 -13.6180 O.co2 1 LGD -0.7505
62 O26 1.1561 4.5181 3.5401 O.3 1 LGD -0.5154
63 S3 1.5263 5.9055 2.7746 S.O2 1 LGD 1.5524
64 O27 1.7566 6.8521 3.8536 O.co2 1 LGD -0.7599
65 O28 0.3502 6.1958 1.9733 O.co2 1 LGD -0.7599
66 O29 2.7173 5.5958 2.0008 O.co2 1 LGD -0.7599
67 S4 1.5040 -1.6529 5.3390 S.O2 1 LGD 1.5355
68 O30 -4.4196 -3.3804 1.5853 O.3 1 LGD -0.5779
69 S5 -4.8250 -4.5184 2.6741 S.O2 1 LGD 1.5480
70 O31 -4.9213 -5.7447 1.8994 O.co2 1 LGD -0.7573
71 O32 -6.0913 -4.0528 3.2133 O.co2 1 LGD -0.7573
72 O33 -3.7296 -4.5064 3.6285 O.co2 1 LGD -0.7573
73 O34 1.8565 -0.9271 6.5489 O.co2 1 LGD -0.7334
74 O35 2.5478 -1.6680 4.3298 O.co2 1 LGD -0.7334
75 O36 0.8892 -2.9454 5.5894 O.co2 1 LGD -0.7334
76 S6 1.4590 -3.7945 1.1208 S.O2 1 LGD 1.5366
77 O37 1.8052 -4.8267 0.1591 O.co2 1 LGD -0.7257
78 O38 1.3077 -4.2912 2.4768 O.co2 1 LGD -0.7257
79 O39 2.2600 -2.5877 1.0071 O.co2 1 LGD -0.7257
80 O40 -4.4118 1.9578 2.6926 O.co2 1 LGD -0.8400
81 O41 -2.8705 3.1347 3.6540 O.co2 1 LGD -0.8400
82 O42 1.5922 -2.1805 -3.0922 O.co2 1 LGD -0.7772
83 O43 0.3698 -3.9551 -2.9168 O.co2 1 LGD -0.7772
84 S7 0.5905 1.6038 0.9047 S.O2 1 LGD 1.4236
85 S8 1.6973 1.3371 10.2304 S.O2 1 LGD 1.4346
86 O44 -0.2097 2.1349 1.9919 O.co2 1 LGD -0.7206
87 O45 0.6116 2.3836 -0.3202 O.co2 1 LGD -0.7206
88 O46 1.7924 0.8914 1.2997 O.co2 1 LGD -0.7206
89 O47 1.0412 0.0436 10.2930 O.co2 1 LGD -0.7633
90 O48 0.9519 2.5134 10.6441 O.co2 1 LGD -0.7633
91 O49 3.1198 1.3722 10.5220 O.co2 1 LGD -0.7633
92 H1 0.7884 -1.3230 -10.7613 H 1 LGD -0.0116
93 H2 2.5048 -2.5134 -9.2691 H 1 LGD 0.0294
94 H3 1.7834 -2.6230 -6.7997 H 1 LGD 0.1257
95 H4 -0.4080 -1.5476 -6.9525 H 1 LGD 0.0264
96 H5 -0.9689 -0.8241 -9.1180 H 1 LGD 0.0383
97 H6 0.0514 -0.2327 -3.6271 H 1 LGD 0.1863
98 H7 -2.0077 -0.5308 -5.8450 H 1 LGD -0.0118
99 H8 -0.6914 1.4465 -5.7521 H 1 LGD 0.4195
100 H9 -0.2806 -2.7598 -5.2747 H 1 LGD 0.0030
101 H10 -3.4313 -2.0007 -2.7093 H 1 LGD 0.0532
102 H11 -2.6367 0.5636 -3.0958 H 1 LGD 0.1005
103 H12 0.5034 -1.8852 -0.6566 H 1 LGD 0.1215
104 H13 -1.5422 -3.3276 -1.3200 H 1 LGD 0.0683
105 H14 0.3358 -1.0512 1.7998 H 1 LGD 0.1376
106 H15 -1.7939 -2.1285 2.3915 H 1 LGD 0.0411
107 H16 -3.7848 -2.1434 -0.6965 H 1 LGD 0.0122
108 H17 -3.7603 -0.9305 3.5610 H 1 LGD 0.0474
109 H18 -1.7320 -2.1733 4.4635 H 1 LGD 0.1324
110 H19 -3.1647 -0.7258 6.4578 H 1 LGD 0.3761
111 H20 -4.3189 0.8058 4.9989 H 1 LGD -0.0102
112 H21 -0.7751 1.4428 4.3740 H 1 LGD 0.1583
113 H22 -0.6644 -0.7297 6.5186 H 1 LGD 0.0406
114 H23 0.6210 5.3237 6.4738 H 1 LGD 0.4154
115 H24 0.1045 3.5549 8.0751 H 1 LGD 0.0445
116 H25 -0.3158 3.6085 5.5382 H 1 LGD 0.0829
117 H26 2.5946 3.4771 8.7240 H 1 LGD 0.0045
118 H27 3.6503 3.5933 6.5143 H 1 LGD -0.0107
119 H28 1.2179 1.9697 4.2255 H 1 LGD 0.1894
120 H29 0.5298 -3.4350 -9.9243 H 1 LGD 0.3457
121 H30 -1.3872 1.5616 -9.4785 H 1 LGD 0.0536
122 H31 0.3285 1.8571 -9.8549 H 1 LGD 0.0536
123 H32 -4.0074 0.4704 -5.0449 H 1 LGD 0.3768
124 H33 -3.4246 -4.4184 0.0704 H 1 LGD 0.0488
125 H34 -2.3982 -3.8738 1.4117 H 1 LGD 0.0488
126 H35 2.6286 4.5713 5.0081 H 1 LGD 0.0172
127 H36 2.9909 3.5316 3.6138 H 1 LGD 0.0172
128 H37 1.8559 0.7554 -10.4439 H 1 LGD 0.3984
129 H38 3.0874 -0.1192 -7.8567 H 1 LGD 0.3985
130 H39 -1.0998 0.5073 -0.3456 H 1 LGD 0.3919
131 H40 1.5923 0.7685 7.9274 H 1 LGD 0.5120
132 H41 6.2265 1.1052 7.0184 H 1 LGD 0.0038
133 H42 5.1839 1.2200 5.5789 H 1 LGD 0.0038
134 H43 5.8686 2.7003 6.3083 H 1 LGD 0.0038
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1