@COMMENT
LIGANDBOX_ID = D01844-07
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-07
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1536 -0.7158 -10.0096 C.3 1 LGD 0.0895
2 C2 1.6227 -1.9112 -9.1167 C.3 1 LGD 0.0941
3 C3 1.7798 -1.5120 -7.6197 C.3 1 LGD 0.2551
4 C4 0.5143 -0.7536 -7.1339 C.3 1 LGD 0.3123
5 O1 0.2843 0.3902 -7.9903 O.3 1 LGD -0.4347
6 C5 -0.0180 0.0996 -9.3792 C.3 1 LGD 0.1315
7 O2 0.7263 -0.2821 -5.7841 O.3 1 LGD -0.3394
8 C6 -0.2580 -0.5456 -4.7448 C.3 1 LGD 0.1020
9 C7 -1.6227 0.1572 -5.0093 C.3 1 LGD 0.0797
10 O3 -2.2769 -0.4032 -6.1531 O.3 1 LGD -0.6310
11 C8 -0.4199 -2.0840 -4.4823 C.3 1 LGD 0.0011
12 O4 -1.7616 -2.3548 -3.9704 O.3 1 LGD -0.4641
13 C9 -2.3399 -1.4002 -3.0395 C.3 1 LGD 0.3270
14 C10 -2.5297 -0.0188 -3.7496 C.3 1 LGD 0.1204
15 O5 0.1173 -3.2846 0.6429 O.3 1 LGD -0.6194
16 C11 -0.1525 -2.0439 -0.0460 C.3 1 LGD 0.2137
17 C12 -1.4413 -2.2608 -0.9034 C.3 1 LGD 0.1250
18 O6 -1.4652 -1.2139 -1.9030 O.3 1 LGD -0.3980
19 C13 -0.3084 -0.8999 1.0076 C.3 1 LGD 0.2465
20 C14 -1.6405 -1.0822 1.7833 C.3 1 LGD 0.3111
21 O7 -2.7274 -1.0874 0.8352 O.3 1 LGD -0.4310
22 C15 -2.7641 -2.2201 -0.0623 C.3 1 LGD 0.1435
23 O8 -1.8395 0.0124 2.6957 O.3 1 LGD -0.3138
24 C16 -2.7017 -0.2629 3.8249 C.3 1 LGD 0.1040
25 C17 -1.8985 -1.1062 4.8639 C.3 1 LGD 0.0997
26 O9 -2.7574 -1.4163 5.9637 O.3 1 LGD -0.6350
27 C18 -3.1682 1.1034 4.4539 C.3 1 LGD 0.0236
28 O10 -2.2686 1.4986 5.5345 O.3 1 LGD -0.5048
29 C19 -0.8780 1.2284 5.2769 C.3 1 LGD 0.3219
30 C20 -0.6642 -0.3039 5.3831 C.3 1 LGD 0.1661
31 O11 1.4433 5.1204 6.9907 O.3 1 LGD -0.6635
32 C21 1.1031 3.7511 7.2185 C.3 1 LGD 0.1164
33 C22 0.5884 3.0972 5.8966 C.3 1 LGD 0.1159
34 O12 -0.0629 1.8652 6.2754 O.3 1 LGD -0.4174
35 C23 2.3385 2.9983 7.8065 C.3 1 LGD 0.2960
36 C24 3.4120 2.7646 6.7057 C.3 1 LGD 0.3250
37 O13 2.7991 2.0612 5.6007 O.3 1 LGD -0.3845
38 C25 1.7511 2.7653 4.8920 C.3 1 LGD 0.1307
39 O14 0.6973 -2.9933 -9.2282 O.3 1 LGD -0.5743
40 C26 -1.4127 -0.5639 -9.5159 C.3 1 LGD 0.1749
41 O15 -3.8962 0.1745 -4.1198 O.3 1 LGD -0.6354
42 C27 -3.0526 -3.5217 0.7362 C.3 1 LGD 0.1520
43 O16 0.4828 -0.6161 4.5674 O.3 1 LGD -0.5331
44 C28 2.3584 3.9890 4.1542 C.3 1 LGD 0.1609
45 O17 2.2504 0.1658 -10.2508 O.3 1 LGD -0.6404
46 N1 2.9939 -0.6927 -7.4536 N.pl3 1 LGD -0.8734
47 C29 0.6690 -2.7079 -3.5784 C.2 1 LGD 0.9188
48 N2 -0.2704 0.4049 0.3248 N.pl3 1 LGD -0.8734
49 O18 4.4755 1.9539 7.2411 O.3 1 LGD -0.3834
50 N3 1.9279 1.7194 8.4058 N.pl3 1 LGD -0.8716
51 C30 -3.3785 2.2348 3.4207 C.2 1 LGD 0.9503
52 C31 5.6163 1.8269 6.3776 C.3 1 LGD 0.1343
53 S1 4.2797 -1.1053 -6.3772 S.O2 1 LGD 1.4200
54 O19 4.0895 -2.5279 -6.1533 O.co2 1 LGD -0.7097
55 O20 3.9365 -0.2150 -5.2834 O.co2 1 LGD -0.7097
56 O21 5.4041 -0.6779 -7.1911 O.co2 1 LGD -0.7097
57 O22 -2.3950 0.3542 -9.0032 O.3 1 LGD -0.5706
58 S2 -3.9707 0.0257 -9.2451 S.O2 1 LGD 1.5480
59 O23 -4.0968 -1.4036 -9.0133 O.co2 1 LGD -0.7389
60 O24 -4.2006 0.4227 -10.6239 O.co2 1 LGD -0.7389
61 O25 -4.6529 0.8551 -8.2668 O.co2 1 LGD -0.7389
62 O26 1.3220 4.6338 3.3951 O.3 1 LGD -0.5140
63 S3 1.6968 6.0083 2.6088 S.O2 1 LGD 1.5524
64 O27 1.9240 6.9718 3.6733 O.co2 1 LGD -0.7603
65 O28 0.5240 6.2870 1.7984 O.co2 1 LGD -0.7603
66 O29 2.8904 5.6852 1.8446 O.co2 1 LGD -0.7603
67 S4 1.6601 -1.5352 5.2129 S.O2 1 LGD 1.5329
68 O30 -4.2291 -3.3088 1.5394 O.3 1 LGD -0.5769
69 S5 -4.6273 -4.4392 2.6386 S.O2 1 LGD 1.5485
70 O31 -4.7112 -5.6741 1.8762 O.co2 1 LGD -0.7591
71 O32 -5.8988 -3.9791 3.1702 O.co2 1 LGD -0.7591
72 O33 -3.5344 -4.4081 3.5955 O.co2 1 LGD -0.7591
73 O34 2.0394 -0.8378 6.4314 O.co2 1 LGD -0.7332
74 O35 2.6930 -1.5539 4.1928 O.co2 1 LGD -0.7332
75 O36 1.0206 -2.8189 5.4460 O.co2 1 LGD -0.7332
76 S6 1.6431 -3.7338 1.0029 S.O2 1 LGD 1.5377
77 O37 1.9719 -4.6942 -0.0361 O.co2 1 LGD -0.7292
78 O38 1.5237 -4.3237 2.3245 O.co2 1 LGD -0.7292
79 O39 2.4368 -2.5178 0.9553 O.co2 1 LGD -0.7292
80 O40 -4.2474 2.0570 2.5831 O.co2 1 LGD -0.8391
81 O41 -2.7150 3.2517 3.5365 O.co2 1 LGD -0.8391
82 O42 1.6597 -2.0428 -3.3309 O.co2 1 LGD -0.7882
83 O43 0.4468 -3.8213 -3.1343 O.co2 1 LGD -0.7882
84 S7 0.7623 1.6952 0.8233 S.O2 1 LGD 1.4241
85 S8 1.8925 1.4908 10.1100 S.O2 1 LGD 1.4345
86 O44 -0.0641 2.2513 1.8778 O.co2 1 LGD -0.7226
87 O45 0.8127 2.4482 -0.4174 O.co2 1 LGD -0.7226
88 O46 1.9545 0.9924 1.2627 O.co2 1 LGD -0.7226
89 O47 1.2048 0.2143 10.1827 O.co2 1 LGD -0.7629
90 O48 1.1848 2.6856 10.5368 O.co2 1 LGD -0.7629
91 O49 3.3201 1.4879 10.3775 O.co2 1 LGD -0.7629
92 H1 0.8185 -1.1170 -10.9746 H 1 LGD -0.0042
93 H2 2.5965 -2.2590 -9.4853 H 1 LGD 0.0237
94 H3 1.8639 -2.4305 -7.0269 H 1 LGD 0.1347
95 H4 -0.3428 -1.4323 -7.1716 H 1 LGD 0.0582
96 H5 -0.0784 1.0520 -9.9214 H 1 LGD 0.0361
97 H6 0.1316 -0.1018 -3.8191 H 1 LGD 0.1718
98 H7 -1.4516 1.2285 -5.1733 H 1 LGD 0.0280
99 H8 -1.9402 0.0576 -6.9441 H 1 LGD 0.4034
100 H9 -0.3310 -2.6131 -5.4381 H 1 LGD 0.0032
101 H10 -3.3153 -1.7668 -2.7041 H 1 LGD 0.0547
102 H11 -2.2515 0.7606 -3.0286 H 1 LGD 0.1140
103 H12 0.6796 -1.8138 -0.7249 H 1 LGD 0.1176
104 H13 -1.3679 -3.2340 -1.4045 H 1 LGD 0.0683
105 H14 0.5159 -0.9632 1.7283 H 1 LGD 0.1347
106 H15 -1.6129 -2.0253 2.3379 H 1 LGD 0.0390
107 H16 -3.6125 -2.0866 -0.7421 H 1 LGD 0.0200
108 H17 -3.5851 -0.8207 3.4867 H 1 LGD 0.0494
109 H18 -1.5554 -2.0435 4.4084 H 1 LGD 0.1333
110 H19 -2.9913 -0.5670 6.3792 H 1 LGD 0.3757
111 H20 -4.1549 0.9304 4.9020 H 1 LGD -0.0102
112 H21 -0.6179 1.5852 4.2736 H 1 LGD 0.1590
113 H22 -0.4755 -0.5698 6.4315 H 1 LGD 0.0400
114 H23 0.7939 5.4820 6.3617 H 1 LGD 0.4139
115 H24 0.2910 3.7194 7.9563 H 1 LGD 0.0430
116 H25 -0.1452 3.7612 5.4204 H 1 LGD 0.0822
117 H26 2.7843 3.6243 8.5901 H 1 LGD 0.0042
118 H27 3.8231 3.7229 6.3697 H 1 LGD -0.0111
119 H28 1.3678 2.0997 4.1098 H 1 LGD 0.1916
120 H29 0.7255 -3.3017 -10.1505 H 1 LGD 0.3402
121 H30 -1.6102 -0.7646 -10.5765 H 1 LGD 0.0326
122 H31 -1.4568 -1.5136 -8.9703 H 1 LGD 0.0326
123 H32 -3.9476 -0.0717 -5.0625 H 1 LGD 0.4083
124 H33 -3.2187 -4.3515 0.0379 H 1 LGD 0.0486
125 H34 -2.2024 -3.7819 1.3766 H 1 LGD 0.0486
126 H35 2.7936 4.7009 4.8638 H 1 LGD 0.0168
127 H36 3.1540 3.6434 3.4823 H 1 LGD 0.0168
128 H37 2.1713 0.8930 -9.6086 H 1 LGD 0.4338
129 H38 3.0825 0.1628 -7.9756 H 1 LGD 0.3742
130 H39 -0.9121 0.5807 -0.4318 H 1 LGD 0.3953
131 H40 1.7497 0.9221 7.8097 H 1 LGD 0.5106
132 H41 6.3900 1.2249 6.8697 H 1 LGD 0.0039
133 H42 5.3350 1.3332 5.4388 H 1 LGD 0.0039
134 H43 6.0337 2.8159 6.1497 H 1 LGD 0.0039
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1