@COMMENT
LIGANDBOX_ID = D01844-08
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-08
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0574 -0.6742 -9.9912 C.3 1 LGD 0.0884
2 C2 1.5640 -1.8975 -9.1562 C.3 1 LGD 0.0949
3 C3 1.8004 -1.5438 -7.6578 C.3 1 LGD 0.2557
4 C4 0.5802 -0.7662 -7.0938 C.3 1 LGD 0.3090
5 O1 0.3433 0.4059 -7.9062 O.3 1 LGD -0.4299
6 C5 -0.0628 0.1414 -9.2724 C.3 1 LGD 0.1332
7 O2 0.8523 -0.3456 -5.7394 O.3 1 LGD -0.3310
8 C6 -0.1584 -0.5920 -4.7254 C.3 1 LGD 0.0922
9 C7 -1.5043 0.0790 -5.1028 C.3 1 LGD 0.0888
10 O3 -1.3385 1.4634 -5.4143 O.3 1 LGD -0.5905
11 C8 -0.3340 -2.1360 -4.4939 C.3 1 LGD -0.0072
12 O4 -1.7019 -2.4300 -4.0699 O.3 1 LGD -0.4687
13 C9 -2.3565 -1.4739 -3.1975 C.3 1 LGD 0.3103
14 C10 -2.5915 -0.1532 -4.0033 C.3 1 LGD 0.1525
15 O5 0.0575 -3.2763 0.5103 O.3 1 LGD -0.6211
16 C11 -0.2132 -2.0232 -0.1561 C.3 1 LGD 0.2152
17 C12 -1.5038 -2.2345 -1.0130 C.3 1 LGD 0.1246
18 O6 -1.5253 -1.2107 -2.0369 O.3 1 LGD -0.4065
19 C13 -0.3627 -0.8971 0.9160 C.3 1 LGD 0.2425
20 C14 -1.6971 -1.0785 1.6845 C.3 1 LGD 0.3097
21 O7 -2.7797 -1.0558 0.7315 O.3 1 LGD -0.4300
22 C15 -2.8296 -2.1773 -0.1799 C.3 1 LGD 0.1448
23 O8 -1.8839 0.0053 2.6122 O.3 1 LGD -0.3147
24 C16 -2.7429 -0.2772 3.7413 C.3 1 LGD 0.1043
25 C17 -1.9404 -1.1348 4.7693 C.3 1 LGD 0.1007
26 O9 -2.7999 -1.4570 5.8650 O.3 1 LGD -0.6350
27 C18 -3.2008 1.0853 4.3840 C.3 1 LGD 0.0234
28 O10 -2.2957 1.4675 5.4644 O.3 1 LGD -0.5049
29 C19 -0.9070 1.1913 5.2028 C.3 1 LGD 0.3216
30 C20 -0.7038 -0.3432 5.2998 C.3 1 LGD 0.1664
31 O11 1.3908 5.0816 6.9451 O.3 1 LGD -0.6649
32 C21 1.0581 3.7090 7.1648 C.3 1 LGD 0.1165
33 C22 0.5548 3.0581 5.8372 C.3 1 LGD 0.1155
34 O12 -0.0883 1.8184 6.2047 O.3 1 LGD -0.4156
35 C23 2.2951 2.9617 7.7559 C.3 1 LGD 0.2961
36 C24 3.3761 2.7385 6.6600 C.3 1 LGD 0.3255
37 O13 2.7732 2.0390 5.5466 O.3 1 LGD -0.3845
38 C25 1.7243 2.7407 4.8366 C.3 1 LGD 0.1312
39 O14 0.6299 -2.9735 -9.2515 O.3 1 LGD -0.5737
40 C26 -1.4688 -0.5156 -9.3096 C.3 1 LGD 0.1724
41 O15 -2.7044 0.9462 -3.0929 O.3 1 LGD -0.6110
42 C27 -3.1379 -3.4839 0.6028 C.3 1 LGD 0.1514
43 O16 0.4456 -0.6599 4.4892 O.3 1 LGD -0.5319
44 C28 2.3286 3.9731 4.1105 C.3 1 LGD 0.1606
45 O17 2.1512 0.1993 -10.2722 O.3 1 LGD -0.6454
46 N1 3.0434 -0.7624 -7.5271 N.pl3 1 LGD -0.8754
47 C29 0.7096 -2.7705 -3.5464 C.2 1 LGD 0.9195
48 N2 -0.3140 0.4195 0.2582 N.pl3 1 LGD -0.8705
49 O18 4.4395 1.9289 7.1976 O.3 1 LGD -0.3836
50 N3 1.8893 1.6786 8.3495 N.pl3 1 LGD -0.8721
51 C30 -3.4098 2.2264 3.3613 C.2 1 LGD 0.9496
52 C31 5.5871 1.8124 6.3416 C.3 1 LGD 0.1345
53 S1 4.3286 -1.1918 -6.4556 S.O2 1 LGD 1.4204
54 O19 4.0903 -2.5994 -6.1873 O.co2 1 LGD -0.7101
55 O20 4.0353 -0.2590 -5.3830 O.co2 1 LGD -0.7101
56 O21 5.4559 -0.8298 -7.2967 O.co2 1 LGD -0.7101
57 O22 -2.3873 0.3472 -8.6151 O.3 1 LGD -0.5618
58 S2 -3.9364 -0.1293 -8.4807 S.O2 1 LGD 1.5401
59 O23 -3.8656 -1.3946 -7.7694 O.co2 1 LGD -0.7335
60 O24 -4.3945 -0.2494 -9.8551 O.co2 1 LGD -0.7335
61 O25 -4.5694 0.9429 -7.7327 O.co2 1 LGD -0.7335
62 O26 1.2908 4.6251 3.3596 O.3 1 LGD -0.5133
63 S3 1.6633 6.0108 2.5922 S.O2 1 LGD 1.5521
64 O27 1.8922 6.9593 3.6697 O.co2 1 LGD -0.7602
65 O28 0.4888 6.3003 1.7881 O.co2 1 LGD -0.7602
66 O29 2.8556 5.6990 1.8211 O.co2 1 LGD -0.7602
67 S4 1.6336 -1.5516 5.1540 S.O2 1 LGD 1.5355
68 O30 -4.3020 -3.2609 1.4211 O.3 1 LGD -0.5761
69 S5 -4.7016 -4.3953 2.5158 S.O2 1 LGD 1.5480
70 O31 -4.8036 -5.6240 1.7456 O.co2 1 LGD -0.7587
71 O32 -5.9641 -3.9270 3.0615 O.co2 1 LGD -0.7587
72 O33 -3.6002 -4.3810 3.4634 O.co2 1 LGD -0.7587
73 O34 1.9983 -0.8307 6.3632 O.co2 1 LGD -0.7341
74 O35 2.6711 -1.5718 4.1385 O.co2 1 LGD -0.7341
75 O36 1.0112 -2.8403 5.4054 O.co2 1 LGD -0.7341
76 S6 1.5732 -3.7074 0.9316 S.O2 1 LGD 1.5387
77 O37 1.9116 -4.7485 -0.0232 O.co2 1 LGD -0.7284
78 O38 1.4231 -4.1933 2.2917 O.co2 1 LGD -0.7284
79 O39 2.3803 -2.5057 0.8071 O.co2 1 LGD -0.7284
80 O40 -4.2811 2.0589 2.5242 O.co2 1 LGD -0.8380
81 O41 -2.7421 3.2399 3.4843 O.co2 1 LGD -0.8380
82 O42 1.7027 -2.1201 -3.2717 O.co2 1 LGD -0.7884
83 O43 0.4508 -3.8741 -3.0975 O.co2 1 LGD -0.7884
84 S7 0.7416 1.6849 0.7727 S.O2 1 LGD 1.4213
85 S8 1.8390 1.4481 10.0530 S.O2 1 LGD 1.4343
86 O44 -0.0918 2.2606 1.8111 O.co2 1 LGD -0.7206
87 O45 0.8236 2.4368 -0.4668 O.co2 1 LGD -0.7206
88 O46 1.9142 0.9605 1.2294 O.co2 1 LGD -0.7206
89 O47 1.1735 0.1595 10.1179 O.co2 1 LGD -0.7635
90 O48 1.1046 2.6297 10.4715 O.co2 1 LGD -0.7635
91 O49 3.2632 1.4719 10.3374 O.co2 1 LGD -0.7635
92 H1 0.6611 -1.0464 -10.9446 H 1 LGD -0.0046
93 H2 2.5159 -2.2390 -9.5834 H 1 LGD 0.0198
94 H3 1.8859 -2.4811 -7.0956 H 1 LGD 0.1315
95 H4 -0.3020 -1.4140 -7.1124 H 1 LGD 0.0533
96 H5 -0.1560 1.1022 -9.7945 H 1 LGD 0.0341
97 H6 0.1822 -0.1393 -3.7850 H 1 LGD 0.1751
98 H7 -1.8753 -0.4294 -6.0009 H 1 LGD 0.0060
99 H8 -0.7753 1.5030 -6.2082 H 1 LGD 0.3907
100 H9 -0.1855 -2.6520 -5.4492 H 1 LGD 0.0007
101 H10 -3.3262 -1.8711 -2.8798 H 1 LGD 0.0456
102 H11 -3.5485 -0.2609 -4.5294 H 1 LGD 0.0386
103 H12 0.6171 -1.7825 -0.8326 H 1 LGD 0.1208
104 H13 -1.4370 -3.2175 -1.4955 H 1 LGD 0.0695
105 H14 0.4582 -0.9800 1.6385 H 1 LGD 0.1354
106 H15 -1.6819 -2.0303 2.2248 H 1 LGD 0.0402
107 H16 -3.6705 -2.0216 -0.8650 H 1 LGD 0.0188
108 H17 -3.6300 -0.8275 3.4005 H 1 LGD 0.0492
109 H18 -1.5994 -2.0668 4.3014 H 1 LGD 0.1335
110 H19 -3.0306 -0.6129 6.2925 H 1 LGD 0.3754
111 H20 -4.1866 0.9128 4.8341 H 1 LGD -0.0106
112 H21 -0.6450 1.5523 4.2013 H 1 LGD 0.1583
113 H22 -0.5235 -0.6174 6.3477 H 1 LGD 0.0392
114 H23 0.7567 5.4358 6.2967 H 1 LGD 0.4156
115 H24 0.2421 3.6687 7.8979 H 1 LGD 0.0441
116 H25 -0.1817 3.7192 5.3614 H 1 LGD 0.0837
117 H26 2.7329 3.5877 8.5440 H 1 LGD 0.0035
118 H27 3.7855 3.7003 6.3324 H 1 LGD -0.0113
119 H28 1.3484 2.0776 4.0485 H 1 LGD 0.1907
120 H29 0.6260 -3.2696 -10.1782 H 1 LGD 0.3391
121 H30 -1.7836 -0.6353 -10.3538 H 1 LGD 0.0271
122 H31 -1.4530 -1.5064 -8.8421 H 1 LGD 0.0271
123 H32 -1.9480 0.8846 -2.4833 H 1 LGD 0.4665
124 H33 -3.3262 -4.3005 -0.1053 H 1 LGD 0.0480
125 H34 -2.2858 -3.7689 1.2302 H 1 LGD 0.0480
126 H35 2.7638 4.6781 4.8271 H 1 LGD 0.0163
127 H36 3.1241 3.6359 3.4341 H 1 LGD 0.0163
128 H37 2.1300 0.8991 -9.5959 H 1 LGD 0.4362
129 H38 3.1562 0.0740 -8.0748 H 1 LGD 0.3736
130 H39 -1.0039 0.6414 -0.4401 H 1 LGD 0.3907
131 H40 1.7218 0.8811 7.7503 H 1 LGD 0.5121
132 H41 6.3597 1.2105 6.8355 H 1 LGD 0.0034
133 H42 5.3146 1.3237 5.3977 H 1 LGD 0.0034
134 H43 6.0018 2.8047 6.1233 H 1 LGD 0.0034
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1