@COMMENT
LIGANDBOX_ID = D01844-09
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-09
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 6.4390 2.6389 -7.9478 C.3 1 LGD 0.0826
2 C2 6.9026 1.4069 -7.1001 C.3 1 LGD 0.1032
3 C3 7.1110 1.7584 -5.5961 C.3 1 LGD 0.2562
4 C4 5.8750 2.5347 -5.0639 C.3 1 LGD 0.3196
5 O1 5.6807 3.7168 -5.8751 O.3 1 LGD -0.4416
6 C5 5.3178 3.4765 -7.2570 C.3 1 LGD 0.1299
7 O2 6.0941 2.9512 -3.6993 O.3 1 LGD -0.3633
8 C6 5.0241 2.7504 -2.7371 C.3 1 LGD 0.0930
9 C7 3.6946 3.4089 -3.2164 C.3 1 LGD 0.0665
10 O3 3.8736 4.7998 -3.4763 O.3 1 LGD -0.6256
11 C8 4.8550 1.2211 -2.4137 C.3 1 LGD -0.0146
12 O4 3.4431 0.9327 -2.1901 O.3 1 LGD -0.3786
13 C9 2.7833 1.8947 -1.3427 C.3 1 LGD 0.3634
14 C10 2.5371 3.1870 -2.1927 C.3 1 LGD 0.1114
15 O5 -1.3635 2.7863 0.7857 O.3 1 LGD -0.6027
16 C11 -0.6438 1.7121 0.1438 C.3 1 LGD 0.2062
17 C12 0.8748 2.0707 0.1995 C.3 1 LGD 0.1222
18 O6 1.5418 1.3330 -0.8534 O.3 1 LGD -0.3544
19 C13 -1.0047 0.3866 0.8752 C.3 1 LGD 0.2548
20 C14 -0.3155 0.3590 2.2636 C.3 1 LGD 0.3117
21 O7 1.1083 0.4812 2.0680 O.3 1 LGD -0.4045
22 C15 1.5575 1.7663 1.5757 C.3 1 LGD 0.1447
23 O8 -0.5874 -0.8865 2.9320 O.3 1 LGD -0.3131
24 C16 -0.5409 -0.8457 4.3782 C.3 1 LGD 0.1051
25 C17 -1.8377 -0.1466 4.8976 C.3 1 LGD 0.0978
26 O9 -1.7761 -0.0692 6.3236 O.3 1 LGD -0.6315
27 C18 -0.4441 -2.3192 4.9261 C.3 1 LGD 0.0208
28 O10 -1.7754 -2.8342 5.2340 O.3 1 LGD -0.5038
29 C19 -2.7896 -2.4641 4.2816 C.3 1 LGD 0.3244
30 C20 -3.1045 -0.9589 4.4800 C.3 1 LGD 0.1633
31 O11 -5.4707 -6.4478 3.6809 O.3 1 LGD -0.6595
32 C21 -5.3851 -5.1689 4.3128 C.3 1 LGD 0.1176
33 C22 -4.2717 -4.3074 3.6347 C.3 1 LGD 0.1157
34 O12 -3.9910 -3.2133 4.5346 O.3 1 LGD -0.4242
35 C23 -6.7812 -4.4716 4.2680 C.3 1 LGD 0.2955
36 C24 -7.0934 -3.9642 2.8315 C.3 1 LGD 0.3224
37 O13 -6.0196 -3.0959 2.4019 O.3 1 LGD -0.3874
38 C25 -4.7191 -3.7142 2.2500 C.3 1 LGD 0.1306
39 O14 5.9499 0.3496 -7.2165 O.3 1 LGD -0.5630
40 C26 3.8952 2.8679 -7.3452 C.3 1 LGD 0.1778
41 O15 1.3023 3.1169 -2.9128 O.3 1 LGD -0.5513
42 C27 1.3024 2.8639 2.6460 C.3 1 LGD 0.1506
43 O16 -3.5896 -0.4720 3.2125 O.3 1 LGD -0.5364
44 C28 -4.7637 -4.7298 1.0767 C.3 1 LGD 0.1615
45 O17 7.5558 3.4920 -8.2014 O.3 1 LGD -0.6478
46 N1 8.3516 2.5418 -5.4488 N.pl3 1 LGD -0.8845
47 C29 5.7307 0.7720 -1.2171 C.2 1 LGD 0.9075
48 N2 -0.5968 -0.7616 0.0485 N.pl3 1 LGD -0.8793
49 O18 -8.3226 -3.2136 2.8460 O.3 1 LGD -0.3816
50 N3 -6.8309 -3.3618 5.2319 N.pl3 1 LGD -0.8711
51 C30 0.3613 -3.2805 4.0211 C.2 1 LGD 0.9498
52 C31 -8.8162 -2.8596 1.5445 C.3 1 LGD 0.1352
53 S1 9.5333 2.2408 -4.2251 S.O2 1 LGD 1.4337
54 O19 9.2362 0.8859 -3.7944 O.co2 1 LGD -0.7234
55 O20 9.1797 3.3117 -3.3107 O.co2 1 LGD -0.7234
56 O21 10.7345 2.4700 -5.0086 O.co2 1 LGD -0.7234
57 O22 2.9976 3.7568 -6.6578 O.3 1 LGD -0.5877
58 S2 1.4146 3.3910 -6.6199 S.O2 1 LGD 1.5228
59 O23 1.3679 1.9993 -6.2055 O.co2 1 LGD -0.7104
60 O24 0.9685 3.6182 -7.9843 O.co2 1 LGD -0.7104
61 O25 0.8705 4.3247 -5.6491 O.co2 1 LGD -0.7104
62 O26 -3.4404 -5.2484 0.8638 O.3 1 LGD -0.5124
63 S3 -3.2419 -6.3853 -0.2832 S.O2 1 LGD 1.5512
64 O27 -3.9342 -7.5474 0.2492 O.co2 1 LGD -0.7586
65 O28 -1.8017 -6.5470 -0.3801 O.co2 1 LGD -0.7586
66 O29 -3.8633 -5.8255 -1.4722 O.co2 1 LGD -0.7586
67 S4 -4.8985 0.4941 3.2016 S.O2 1 LGD 1.5295
68 O30 1.8075 2.4012 3.9130 O.3 1 LGD -0.5624
69 S5 1.4364 3.2579 5.2446 S.O2 1 LGD 1.5475
70 O31 1.8745 4.6104 4.9407 O.co2 1 LGD -0.7577
71 O32 2.1925 2.6094 6.3023 O.co2 1 LGD -0.7577
72 O33 -0.0044 3.1177 5.3692 O.co2 1 LGD -0.7577
73 O34 -5.9230 -0.2761 3.8883 O.co2 1 LGD -0.7345
74 O35 -5.1644 0.7114 1.7910 O.co2 1 LGD -0.7345
75 O36 -4.4724 1.6816 3.9223 O.co2 1 LGD -0.7345
76 S6 -2.6693 3.4238 0.0520 S.O2 1 LGD 1.5403
77 O37 -2.1018 4.3028 -0.9562 O.co2 1 LGD -0.7393
78 O38 -3.3652 4.1207 1.1196 O.co2 1 LGD -0.7393
79 O39 -3.3884 2.2868 -0.4961 O.co2 1 LGD -0.7393
80 O40 1.5441 -3.0254 3.8674 O.co2 1 LGD -0.8344
81 O41 -0.2083 -4.2607 3.5704 O.co2 1 LGD -0.8344
82 O42 6.8746 1.1908 -1.1771 O.co2 1 LGD -0.8175
83 O43 5.2188 0.0678 -0.3635 O.co2 1 LGD -0.8175
84 S7 -1.6615 -2.0731 -0.3121 S.O2 1 LGD 1.4223
85 S8 -7.8102 -3.4312 6.6446 S.O2 1 LGD 1.4354
86 O44 -1.4684 -2.8566 0.8933 O.co2 1 LGD -0.7228
87 O45 -1.0215 -2.5765 -1.5144 O.co2 1 LGD -0.7228
88 O46 -2.9484 -1.4110 -0.4328 O.co2 1 LGD -0.7228
89 O47 -7.2919 -2.2845 7.3685 O.co2 1 LGD -0.7608
90 O48 -7.4995 -4.7621 7.1375 O.co2 1 LGD -0.7608
91 O49 -9.1190 -3.2866 6.0318 O.co2 1 LGD -0.7608
92 H1 6.0591 2.2744 -8.9108 H 1 LGD 0.0102
93 H2 7.8572 1.0472 -7.5057 H 1 LGD 0.0124
94 H3 7.1902 0.8193 -5.0361 H 1 LGD 0.1238
95 H4 4.9922 1.8886 -5.1173 H 1 LGD 0.0760
96 H5 5.2694 4.4451 -7.7710 H 1 LGD 0.0345
97 H6 5.3124 3.2537 -1.8053 H 1 LGD 0.0991
98 H7 3.3971 2.9106 -4.1469 H 1 LGD 0.0470
99 H8 4.4027 4.8620 -4.2924 H 1 LGD 0.3957
100 H9 5.1863 0.6292 -3.2757 H 1 LGD 0.0410
101 H10 3.4373 2.1248 -0.4938 H 1 LGD 0.0439
102 H11 2.5121 4.0406 -1.5037 H 1 LGD 0.0242
103 H12 -0.9435 1.6424 -0.9106 H 1 LGD 0.0840
104 H13 0.9651 3.1448 -0.0054 H 1 LGD 0.0199
105 H14 -2.0902 0.3628 1.0320 H 1 LGD 0.1299
106 H15 -0.6880 1.1912 2.8691 H 1 LGD 0.0362
107 H16 2.6426 1.7165 1.4264 H 1 LGD 0.0594
108 H17 0.3461 -0.2847 4.7014 H 1 LGD 0.0556
109 H18 -1.9089 0.8704 4.4928 H 1 LGD 0.1329
110 H19 -1.7607 -0.9870 6.6492 H 1 LGD 0.3764
111 H20 0.1114 -2.2741 5.8714 H 1 LGD -0.0048
112 H21 -2.4199 -2.6496 3.2660 H 1 LGD 0.1586
113 H22 -3.8765 -0.8523 5.2534 H 1 LGD 0.0397
114 H23 -4.5608 -6.7615 3.5347 H 1 LGD 0.4109
115 H24 -5.1074 -5.3254 5.3632 H 1 LGD 0.0405
116 H25 -3.3647 -4.9140 3.5103 H 1 LGD 0.0866
117 H26 -7.5461 -5.2095 4.5419 H 1 LGD 0.0084
118 H27 -7.1976 -4.8128 2.1465 H 1 LGD -0.0097
119 H28 -4.0077 -2.9357 1.9491 H 1 LGD 0.1915
120 H29 5.9408 0.0712 -8.1487 H 1 LGD 0.3545
121 H30 3.6012 2.7784 -8.3985 H 1 LGD 0.0351
122 H31 3.8660 1.8706 -6.8921 H 1 LGD 0.0351
123 H32 1.4085 3.6218 -3.7412 H 1 LGD 0.4073
124 H33 1.8132 3.7893 2.3523 H 1 LGD 0.0380
125 H34 0.2305 3.0791 2.7243 H 1 LGD 0.0380
126 H35 -5.4533 -5.5530 1.2927 H 1 LGD 0.0150
127 H36 -5.1137 -4.2157 0.1728 H 1 LGD 0.0150
128 H37 7.4869 4.2346 -7.5755 H 1 LGD 0.4254
129 H38 8.5535 3.2635 -6.1210 H 1 LGD 0.3752
130 H39 0.3571 -0.8241 -0.2722 H 1 LGD 0.4142
131 H40 -6.3354 -2.5046 5.0325 H 1 LGD 0.5002
132 H41 -9.7693 -2.3253 1.6410 H 1 LGD 0.0027
133 H42 -8.1015 -2.2076 1.0267 H 1 LGD 0.0027
134 H43 -8.9794 -3.7613 0.9406 H 1 LGD 0.0027
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1