@COMMENT
LIGANDBOX_ID = D01844-10
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-10
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0335 -0.5140 -9.9274 C.3 1 LGD 0.1248
2 C2 1.6184 -1.7733 -9.2067 C.3 1 LGD 0.1013
3 C3 1.8866 -1.5228 -7.6926 C.3 1 LGD 0.2152
4 C4 0.6405 -0.8796 -7.0282 C.3 1 LGD 0.3122
5 O1 0.3417 0.3509 -7.7284 O.3 1 LGD -0.4569
6 C5 -0.0865 0.1998 -9.1064 C.3 1 LGD 0.1384
7 O2 0.9387 -0.5692 -5.6469 O.3 1 LGD -0.3577
8 C6 -0.0955 -0.7237 -4.6322 C.3 1 LGD 0.0997
9 C7 -1.4262 -0.0359 -5.0545 C.3 1 LGD 0.0885
10 O3 -1.2115 1.3320 -5.3983 O.3 1 LGD -0.6186
11 C8 -0.3004 -2.2211 -4.1842 C.3 1 LGD -0.0030
12 O4 -1.7140 -2.4471 -3.9065 O.3 1 LGD -0.4416
13 C9 -2.3740 -1.4451 -3.0962 C.3 1 LGD 0.3257
14 C10 -2.5099 -0.1410 -3.9380 C.3 1 LGD 0.1379
15 O5 0.0851 -3.1504 0.6420 O.3 1 LGD -0.6039
16 C11 -0.2254 -1.9374 -0.0743 C.3 1 LGD 0.2002
17 C12 -1.5118 -2.1981 -0.9160 C.3 1 LGD 0.1175
18 O6 -1.5776 -1.1626 -1.9232 O.3 1 LGD -0.4128
19 C13 -0.3997 -0.7945 0.9627 C.3 1 LGD 0.2615
20 C14 -1.7044 -1.0169 1.7686 C.3 1 LGD 0.3187
21 O7 -2.8106 -1.0543 0.8404 O.3 1 LGD -0.4335
22 C15 -2.8299 -2.1827 -0.0688 C.3 1 LGD 0.1503
23 O8 -1.8988 0.0816 2.6782 O.3 1 LGD -0.3191
24 C16 -2.7565 -0.1773 3.8144 C.3 1 LGD 0.1037
25 C17 -1.9739 -1.0511 4.8455 C.3 1 LGD 0.1012
26 O9 -2.8380 -1.3428 5.9461 O.3 1 LGD -0.6356
27 C18 -3.1726 1.2017 4.4488 C.3 1 LGD 0.0202
28 O10 -2.2643 1.5542 5.5367 O.3 1 LGD -0.5033
29 C19 -0.8803 1.2460 5.2831 C.3 1 LGD 0.3218
30 C20 -0.7127 -0.2934 5.3669 C.3 1 LGD 0.1671
31 O11 1.4308 5.1058 7.0683 O.3 1 LGD -0.6728
32 C21 1.0907 3.7333 7.2816 C.3 1 LGD 0.1162
33 C22 0.5913 3.0915 5.9494 C.3 1 LGD 0.1138
34 O12 -0.0542 1.8471 6.2965 O.3 1 LGD -0.4122
35 C23 2.3227 2.9786 7.8737 C.3 1 LGD 0.2887
36 C24 3.4110 2.7633 6.7831 C.3 1 LGD 0.3250
37 O13 2.8131 2.0783 5.6586 O.3 1 LGD -0.3933
38 C25 1.7652 2.7854 4.9525 C.3 1 LGD 0.1240
39 O14 0.7224 -2.8766 -9.3574 O.3 1 LGD -0.6568
40 C26 -1.4757 -0.4864 -9.1721 C.3 1 LGD 0.1708
41 O15 -3.8006 -0.0926 -4.5491 O.3 1 LGD -0.6396
42 C27 -3.0885 -3.4954 0.7193 C.3 1 LGD 0.1514
43 O16 0.4165 -0.6290 4.5358 O.3 1 LGD -0.5351
44 C28 2.3645 4.0265 4.2364 C.3 1 LGD 0.1653
45 O17 2.0820 0.4194 -10.1873 O.3 1 LGD -0.6581
46 N1 3.0696 -0.6656 -7.5113 N.pl3 1 LGD -0.8853
47 C29 0.2119 -3.2868 -5.1781 C.2 1 LGD 0.9398
48 N2 -0.4349 0.5005 0.2664 N.pl3 1 LGD -0.8804
49 O18 4.4674 1.9424 7.3180 O.3 1 LGD -0.3848
50 N3 1.9112 1.6908 8.4525 N.pl3 1 LGD -0.8742
51 C30 -3.3194 2.3412 3.4137 C.2 1 LGD 0.9459
52 C31 5.6152 1.8209 6.4622 C.3 1 LGD 0.1343
53 S1 4.5504 -1.3023 -6.9014 S.O2 1 LGD 1.4174
54 O19 4.6191 -2.5903 -7.5704 O.co2 1 LGD -0.7238
55 O20 4.2125 -1.3323 -5.4899 O.co2 1 LGD -0.7238
56 O21 5.4590 -0.2496 -7.3196 O.co2 1 LGD -0.7238
57 O22 -2.3960 0.3119 -8.4076 O.3 1 LGD -0.5727
58 S2 -3.9536 -0.1470 -8.3399 S.O2 1 LGD 1.5393
59 O23 -3.9102 -1.5312 -7.9005 O.co2 1 LGD -0.7342
60 O24 -4.4350 0.0273 -9.7002 O.co2 1 LGD -0.7342
61 O25 -4.5403 0.7682 -7.3764 O.co2 1 LGD -0.7342
62 O26 1.3072 4.7278 3.5600 O.3 1 LGD -0.5168
63 S3 1.6638 6.1575 2.8700 S.O2 1 LGD 1.5521
64 O27 1.9573 7.0277 3.9968 O.co2 1 LGD -0.7597
65 O28 0.4571 6.5143 2.1446 O.co2 1 LGD -0.7597
66 O29 2.8135 5.8831 2.0238 O.co2 1 LGD -0.7597
67 S4 1.6019 -1.5425 5.1738 S.O2 1 LGD 1.5324
68 O30 -4.2902 -3.3287 1.4952 O.3 1 LGD -0.5760
69 S5 -4.7064 -4.5093 2.5334 S.O2 1 LGD 1.5504
70 O31 -4.7627 -5.7096 1.7154 O.co2 1 LGD -0.7585
71 O32 -5.9940 -4.0813 3.0533 O.co2 1 LGD -0.7585
72 O33 -3.6372 -4.5138 3.5173 O.co2 1 LGD -0.7585
73 O34 1.9923 -0.8413 6.3866 O.co2 1 LGD -0.7352
74 O35 2.6236 -1.5627 4.1424 O.co2 1 LGD -0.7352
75 O36 0.9674 -2.8274 5.4146 O.co2 1 LGD -0.7352
76 S6 1.5723 -3.7902 0.4896 S.O2 1 LGD 1.5337
77 O37 1.6432 -4.1800 -0.9082 O.co2 1 LGD -0.7331
78 O38 1.5714 -4.9059 1.4199 O.co2 1 LGD -0.7331
79 O39 2.4728 -2.7084 0.8477 O.co2 1 LGD -0.7331
80 O40 -4.2512 2.2516 2.6317 O.co2 1 LGD -0.8355
81 O41 -2.5481 3.2839 3.4794 O.co2 1 LGD -0.8355
82 O42 -0.5816 -3.7581 -5.9763 O.co2 1 LGD -0.8477
83 O43 1.3680 -3.6500 -5.0510 O.co2 1 LGD -0.8477
84 S7 0.7593 1.7089 0.5333 S.O2 1 LGD 1.4336
85 S8 1.7986 1.4626 10.1531 S.O2 1 LGD 1.4354
86 O44 0.4140 2.0737 1.8945 O.co2 1 LGD -0.7273
87 O45 0.4045 2.6436 -0.5197 O.co2 1 LGD -0.7273
88 O46 1.9741 0.9267 0.3867 O.co2 1 LGD -0.7273
89 O47 1.2395 0.1235 10.1957 O.co2 1 LGD -0.7620
90 O48 0.9435 2.5789 10.5177 O.co2 1 LGD -0.7620
91 O49 3.1977 1.6157 10.5124 O.co2 1 LGD -0.7620
92 H1 0.6106 -0.8300 -10.8896 H 1 LGD 0.0202
93 H2 2.5694 -2.0400 -9.6859 H 1 LGD 0.0257
94 H3 2.0750 -2.4895 -7.2105 H 1 LGD 0.1334
95 H4 -0.2118 -1.5634 -7.0840 H 1 LGD 0.0951
96 H5 -0.2173 1.2015 -9.5356 H 1 LGD 0.0348
97 H6 0.2541 -0.1934 -3.7368 H 1 LGD 0.1294
98 H7 -1.8092 -0.5711 -5.9323 H 1 LGD 0.0393
99 H8 -0.6733 1.3297 -6.2115 H 1 LGD 0.4076
100 H9 0.2699 -2.3697 -3.2580 H 1 LGD 0.1019
101 H10 -3.3674 -1.7988 -2.7993 H 1 LGD 0.0595
102 H11 -2.3990 0.7148 -3.2593 H 1 LGD 0.0863
103 H12 0.5980 -1.6828 -0.7556 H 1 LGD 0.0947
104 H13 -1.4074 -3.1737 -1.4084 H 1 LGD 0.0478
105 H14 0.4506 -0.8138 1.6573 H 1 LGD 0.1293
106 H15 -1.6391 -1.9568 2.3254 H 1 LGD 0.0423
107 H16 -3.6793 -2.0583 -0.7502 H 1 LGD 0.0333
108 H17 -3.6596 -0.7051 3.4805 H 1 LGD 0.0491
109 H18 -1.6619 -1.9960 4.3837 H 1 LGD 0.1256
110 H19 -3.0357 -0.4912 6.3756 H 1 LGD 0.3807
111 H20 -4.1695 1.0688 4.8880 H 1 LGD -0.0035
112 H21 -0.6024 1.6075 4.2857 H 1 LGD 0.1587
113 H22 -0.5242 -0.5818 6.4095 H 1 LGD 0.0429
114 H23 1.0275 5.3823 6.2257 H 1 LGD 0.4294
115 H24 0.2711 3.6934 8.0104 H 1 LGD 0.0565
116 H25 -0.1439 3.7572 5.4781 H 1 LGD 0.0866
117 H26 2.7552 3.5971 8.6706 H 1 LGD 0.0079
118 H27 3.8272 3.7265 6.4687 H 1 LGD -0.0101
119 H28 1.3926 2.1251 4.1630 H 1 LGD 0.1967
120 H29 0.9506 -3.5358 -8.6779 H 1 LGD 0.4475
121 H30 -1.8045 -0.5393 -10.2175 H 1 LGD 0.0373
122 H31 -1.4318 -1.5062 -8.7732 H 1 LGD 0.0373
123 H32 -3.6930 0.3020 -5.4353 H 1 LGD 0.4237
124 H33 -3.2092 -4.3266 0.0134 H 1 LGD 0.0495
125 H34 -2.2437 -3.7276 1.3777 H 1 LGD 0.0495
126 H35 2.8492 4.6967 4.9544 H 1 LGD 0.0148
127 H36 3.1190 3.6964 3.5112 H 1 LGD 0.0148
128 H37 2.3524 0.7824 -9.3259 H 1 LGD 0.4440
129 H38 2.9561 0.3347 -7.5045 H 1 LGD 0.3944
130 H39 -1.2141 0.7220 -0.3331 H 1 LGD 0.4065
131 H40 1.7478 0.8978 7.8469 H 1 LGD 0.5059
132 H41 6.3822 1.2094 6.9531 H 1 LGD 0.0034
133 H42 5.3398 1.3396 5.5152 H 1 LGD 0.0034
134 H43 6.0387 2.8106 6.2494 H 1 LGD 0.0034
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1