@COMMENT
LIGANDBOX_ID = D01844-11
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-11
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -2.7487 -5.0586 -9.3038 C.3 1 LGD 0.0858
2 C2 -3.2770 -3.6196 -8.9841 C.3 1 LGD 0.0985
3 C3 -3.6078 -3.4236 -7.4740 C.3 1 LGD 0.2557
4 C4 -2.4286 -3.9419 -6.6067 C.3 1 LGD 0.3137
5 O1 -2.1746 -5.3274 -6.9326 O.3 1 LGD -0.4325
6 C5 -1.6910 -5.5712 -8.2764 C.3 1 LGD 0.1316
7 O2 -2.7619 -3.8545 -5.2049 O.3 1 LGD -0.3477
8 C6 -1.7951 -3.2490 -4.3050 C.3 1 LGD 0.0957
9 C7 -0.4188 -3.9633 -4.3927 C.3 1 LGD 0.0718
10 O3 -0.5472 -5.3630 -4.1494 O.3 1 LGD -0.6151
11 C8 -1.6728 -1.7097 -4.5898 C.3 1 LGD 0.0027
12 O4 -0.3333 -1.2393 -4.2403 O.3 1 LGD -0.4563
13 C9 0.3063 -1.8431 -3.0855 C.3 1 LGD 0.3557
14 C10 0.6243 -3.3329 -3.4201 C.3 1 LGD 0.1488
15 O5 0.9728 -1.5729 0.2979 O.3 1 LGD -0.5873
16 C11 0.6581 -0.3372 -0.3820 C.3 1 LGD 0.1710
17 C12 -0.6468 -0.5431 -1.2247 C.3 1 LGD 0.1232
18 O6 -0.5814 -1.7955 -1.9462 O.3 1 LGD -0.4326
19 C13 0.4987 0.7871 0.6840 C.3 1 LGD 0.2433
20 C14 -0.8196 0.5784 1.4757 C.3 1 LGD 0.3124
21 O7 -1.9190 0.5728 0.5423 O.3 1 LGD -0.4295
22 C15 -1.9535 -0.5501 -0.3680 C.3 1 LGD 0.1766
23 O8 -1.0152 1.6628 2.4010 O.3 1 LGD -0.3281
24 C16 -1.8561 1.3691 3.5411 C.3 1 LGD 0.1069
25 C17 -1.0279 0.5218 4.5574 C.3 1 LGD 0.1002
26 O9 -1.8633 0.1964 5.6708 O.3 1 LGD -0.6271
27 C18 -2.3224 2.7261 4.1899 C.3 1 LGD 0.0204
28 O10 -1.4194 3.1054 5.2729 O.3 1 LGD -0.5046
29 C19 -0.0279 2.8600 4.9961 C.3 1 LGD 0.3225
30 C20 0.2109 1.3290 5.0597 C.3 1 LGD 0.1644
31 O11 2.2940 6.7350 6.7385 O.3 1 LGD -0.6608
32 C21 1.9533 5.3649 6.9594 C.3 1 LGD 0.1159
33 C22 1.4438 4.7165 5.6325 C.3 1 LGD 0.1171
34 O12 0.7869 3.4848 6.0026 O.3 1 LGD -0.4212
35 C23 3.1861 4.6099 7.5494 C.3 1 LGD 0.2967
36 C24 4.2622 4.3767 6.4511 C.3 1 LGD 0.3230
37 O13 3.6516 3.6739 5.3448 O.3 1 LGD -0.3866
38 C25 2.6094 4.3829 4.6326 C.3 1 LGD 0.1301
39 O14 -2.3164 -2.6453 -9.3929 O.3 1 LGD -0.5686
40 C26 -0.2656 -4.9860 -8.4562 C.3 1 LGD 0.1760
41 O15 1.9154 -3.4306 -4.0255 O.3 1 LGD -0.6013
42 C27 -2.2273 -1.8628 0.4225 C.3 1 LGD 0.1573
43 O16 1.3381 1.0571 4.2026 O.3 1 LGD -0.5393
44 C28 3.2241 5.6051 3.8984 C.3 1 LGD 0.1614
45 O17 -3.8438 -5.9747 -9.3266 O.3 1 LGD -0.6469
46 N1 -4.8659 -4.1228 -7.1551 N.pl3 1 LGD -0.8806
47 C29 -2.7701 -0.8475 -3.9198 C.2 1 LGD 0.9296
48 N2 0.5064 2.0992 0.0150 N.pl3 1 LGD -0.8862
49 O18 5.3252 3.5665 6.9878 O.3 1 LGD -0.3797
50 N3 2.7689 3.3310 8.1442 N.pl3 1 LGD -0.8709
51 C30 -2.5323 3.8723 3.1725 C.2 1 LGD 0.9490
52 C31 6.4680 3.4419 6.1266 C.3 1 LGD 0.1351
53 S1 -6.1498 -3.4105 -6.2446 S.O2 1 LGD 1.4276
54 O19 -5.8690 -1.9873 -6.3181 O.co2 1 LGD -0.7150
55 O20 -5.9031 -4.0648 -4.9724 O.co2 1 LGD -0.7150
56 O21 -7.2768 -3.9326 -6.9973 O.co2 1 LGD -0.7150
57 O22 0.5675 -5.5224 -7.4133 O.3 1 LGD -0.5702
58 S2 2.1374 -5.1016 -7.3759 S.O2 1 LGD 1.5358
59 O23 2.1366 -3.6554 -7.5178 O.co2 1 LGD -0.7254
60 O24 2.7173 -5.8064 -8.5068 O.co2 1 LGD -0.7254
61 O25 2.5911 -5.5757 -6.0797 O.co2 1 LGD -0.7254
62 O26 2.1996 6.2357 3.1118 O.3 1 LGD -0.5098
63 S3 2.5907 7.5840 2.2889 S.O2 1 LGD 1.5529
64 O27 2.8273 8.5741 3.3265 O.co2 1 LGD -0.7618
65 O28 1.4224 7.8529 1.4688 O.co2 1 LGD -0.7618
66 O29 3.7816 7.2265 1.5358 O.co2 1 LGD -0.7618
67 S4 2.5057 0.0638 4.7474 S.O2 1 LGD 1.5292
68 O30 -3.3453 -1.6394 1.3036 O.3 1 LGD -0.5739
69 S5 -3.6704 -2.7596 2.4364 S.O2 1 LGD 1.5505
70 O31 -3.7833 -4.0061 1.6971 O.co2 1 LGD -0.7605
71 O32 -4.9148 -2.3048 3.0331 O.co2 1 LGD -0.7605
72 O33 -2.5263 -2.7045 3.3305 O.co2 1 LGD -0.7605
73 O34 2.9291 0.6576 6.0055 O.co2 1 LGD -0.7332
74 O35 3.5144 0.1008 3.7040 O.co2 1 LGD -0.7332
75 O36 1.8412 -1.2197 4.8961 O.co2 1 LGD -0.7332
76 S6 2.5229 -2.0573 0.4258 S.O2 1 LGD 1.5332
77 O37 2.7614 -2.7745 -0.8143 O.co2 1 LGD -0.7379
78 O38 2.5280 -2.9034 1.6061 O.co2 1 LGD -0.7379
79 O39 3.2992 -0.8362 0.5542 O.co2 1 LGD -0.7379
80 O40 -3.4152 3.7160 2.3456 O.co2 1 LGD -0.8403
81 O41 -1.8544 4.8797 3.2907 O.co2 1 LGD -0.8403
82 O42 -3.7698 -1.4119 -3.5098 O.co2 1 LGD -0.8157
83 O43 -2.5447 0.3448 -3.7968 O.co2 1 LGD -0.8157
84 S7 1.5890 3.3615 0.4781 S.O2 1 LGD 1.4208
85 S8 2.7824 3.0769 9.8452 S.O2 1 LGD 1.4355
86 O44 0.8370 3.8959 1.5976 O.co2 1 LGD -0.7252
87 O45 1.5673 4.1499 -0.7412 O.co2 1 LGD -0.7252
88 O46 2.7987 2.6321 0.8146 O.co2 1 LGD -0.7252
89 O47 2.0502 1.8256 9.9207 O.co2 1 LGD -0.7604
90 O48 2.1345 4.2897 10.3144 O.co2 1 LGD -0.7604
91 O49 4.2170 3.0163 10.0636 O.co2 1 LGD -0.7604
92 H1 -2.2896 -5.0459 -10.3007 H 1 LGD 0.0002
93 H2 -4.1949 -3.4510 -9.5621 H 1 LGD 0.0158
94 H3 -3.7172 -2.3488 -7.2879 H 1 LGD 0.1283
95 H4 -1.5385 -3.3392 -6.8148 H 1 LGD 0.0611
96 H5 -1.5979 -6.6560 -8.4146 H 1 LGD 0.0318
97 H6 -2.1619 -3.3760 -3.2781 H 1 LGD 0.1548
98 H7 -0.0374 -3.8161 -5.4104 H 1 LGD 0.0134
99 H8 -1.0623 -5.7265 -4.8924 H 1 LGD 0.3897
100 H9 -1.7988 -1.5431 -5.6661 H 1 LGD 0.0022
101 H10 1.2387 -1.3161 -2.8531 H 1 LGD 0.1079
102 H11 0.6218 -3.8982 -2.4790 H 1 LGD 0.0888
103 H12 1.4742 -0.0702 -1.0659 H 1 LGD 0.0447
104 H13 -0.7249 0.2878 -1.9368 H 1 LGD 0.0817
105 H14 1.3346 0.7258 1.3920 H 1 LGD 0.1327
106 H15 -0.7745 -0.3712 2.0185 H 1 LGD 0.0523
107 H16 -2.7979 -0.4063 -1.0527 H 1 LGD 0.0949
108 H17 -2.7403 0.8073 3.2118 H 1 LGD 0.0627
109 H18 -0.6885 -0.4092 4.0869 H 1 LGD 0.1403
110 H19 -2.1115 1.0419 6.0857 H 1 LGD 0.3734
111 H20 -3.3081 2.5470 4.6377 H 1 LGD -0.0023
112 H21 0.2172 3.2460 3.9995 H 1 LGD 0.1562
113 H22 0.4363 1.0420 6.0953 H 1 LGD 0.0411
114 H23 1.6018 7.1193 6.1719 H 1 LGD 0.4093
115 H24 1.1386 5.3301 7.6943 H 1 LGD 0.0431
116 H25 0.7151 5.3846 5.1543 H 1 LGD 0.0832
117 H26 3.6309 5.2338 8.3353 H 1 LGD 0.0074
118 H27 4.6734 5.3354 6.1162 H 1 LGD -0.0123
119 H28 2.2270 3.7196 3.8479 H 1 LGD 0.1920
120 H29 -2.2483 -2.6972 -10.3621 H 1 LGD 0.3444
121 H30 0.1270 -5.2784 -9.4382 H 1 LGD 0.0288
122 H31 -0.2823 -3.8917 -8.4039 H 1 LGD 0.0288
123 H32 1.9287 -4.2470 -4.5601 H 1 LGD 0.4024
124 H33 -2.4576 -2.6765 -0.2766 H 1 LGD 0.0549
125 H34 -1.3441 -2.1518 1.0032 H 1 LGD 0.0549
126 H35 3.6399 6.3260 4.6106 H 1 LGD 0.0139
127 H36 4.0357 5.2584 3.2463 H 1 LGD 0.0139
128 H37 -3.8522 -6.4200 -8.4609 H 1 LGD 0.4318
129 H38 -5.0077 -5.0557 -7.5053 H 1 LGD 0.3708
130 H39 -0.2531 2.3412 -0.6013 H 1 LGD 0.3991
131 H40 2.5367 2.5526 7.5436 H 1 LGD 0.5035
132 H41 7.2422 2.8421 6.6206 H 1 LGD 0.0026
133 H42 6.1896 2.9469 5.1876 H 1 LGD 0.0026
134 H43 6.8832 4.4318 5.8989 H 1 LGD 0.0026
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1