@COMMENT
LIGANDBOX_ID = D01844-12
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-12
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0252 -0.4927 -9.8654 C.3 1 LGD 0.0970
2 C2 1.5343 -1.7888 -9.1572 C.3 1 LGD 0.0822
3 C3 1.7860 -1.5606 -7.6373 C.3 1 LGD 0.2536
4 C4 0.5453 -0.8903 -6.9922 C.3 1 LGD 0.3141
5 O1 0.2995 0.3636 -7.6695 O.3 1 LGD -0.4344
6 C5 -0.0932 0.2499 -9.0626 C.3 1 LGD 0.1492
7 O2 0.8330 -0.6261 -5.6020 O.3 1 LGD -0.3414
8 C6 -0.2124 -0.8183 -4.6114 C.3 1 LGD 0.1032
9 C7 -1.4372 0.0821 -4.9092 C.3 1 LGD 0.0871
10 O3 -1.0536 1.4466 -5.0694 O.3 1 LGD -0.6044
11 C8 -0.6417 -2.3256 -4.5240 C.3 1 LGD 0.0025
12 O4 -1.9719 -2.4413 -3.9271 O.3 1 LGD -0.4660
13 C9 -2.4279 -1.4015 -3.0210 C.3 1 LGD 0.3366
14 C10 -2.5215 -0.0513 -3.7972 C.3 1 LGD 0.1308
15 O5 0.9210 -1.9400 -0.8298 O.3 1 LGD -0.5306
16 C11 -0.2443 -2.1194 0.0056 C.3 1 LGD 0.2221
17 C12 -1.5071 -2.2943 -0.9027 C.3 1 LGD 0.1247
18 O6 -1.5125 -1.2491 -1.9084 O.3 1 LGD -0.3738
19 C13 -0.3774 -0.9262 1.0074 C.3 1 LGD 0.2421
20 C14 -1.7140 -1.0884 1.7776 C.3 1 LGD 0.3111
21 O7 -2.7980 -1.1070 0.8245 O.3 1 LGD -0.4243
22 C15 -2.8287 -2.2492 -0.0654 C.3 1 LGD 0.1289
23 O8 -1.9097 0.0144 2.6802 O.3 1 LGD -0.3019
24 C16 -2.7901 -0.2394 3.8012 C.3 1 LGD 0.1020
25 C17 -2.0284 -1.1132 4.8481 C.3 1 LGD 0.1001
26 O9 -2.9138 -1.4017 5.9324 O.3 1 LGD -0.6376
27 C18 -3.2171 1.1390 4.4308 C.3 1 LGD 0.0238
28 O10 -2.3108 1.5050 5.5162 O.3 1 LGD -0.5029
29 C19 -0.9289 1.1820 5.2721 C.3 1 LGD 0.3214
30 C20 -0.7764 -0.3566 5.3925 C.3 1 LGD 0.1648
31 O11 1.4050 5.0562 6.9984 O.3 1 LGD -0.6716
32 C21 1.0576 3.6878 7.2249 C.3 1 LGD 0.1164
33 C22 0.5482 3.0357 5.9012 C.3 1 LGD 0.1135
34 O12 -0.0994 1.7992 6.2709 O.3 1 LGD -0.4120
35 C23 2.2868 2.9303 7.8195 C.3 1 LGD 0.2914
36 C24 3.3673 2.6928 6.7253 C.3 1 LGD 0.3260
37 O13 2.7590 2.0019 5.6087 O.3 1 LGD -0.3897
38 C25 1.7150 2.7128 4.8994 C.3 1 LGD 0.1290
39 O14 0.5972 -2.8512 -9.3361 O.3 1 LGD -0.5717
40 C26 -1.5015 -0.3933 -9.1748 C.3 1 LGD 0.1683
41 O15 -3.8124 0.0763 -4.3981 O.3 1 LGD -0.6433
42 C27 -3.0779 -3.5513 0.7428 C.3 1 LGD 0.1501
43 O16 0.3762 -0.7216 4.6063 O.3 1 LGD -0.5296
44 C28 2.3250 3.9449 4.1765 C.3 1 LGD 0.1609
45 O17 2.1297 0.3909 -10.0591 O.3 1 LGD -0.6655
46 N1 2.9730 -0.7132 -7.4315 N.pl3 1 LGD -0.8842
47 C29 0.3902 -3.2572 -3.8474 C.2 1 LGD 0.9308
48 N2 -0.3174 0.3655 0.3004 N.pl3 1 LGD -0.8601
49 O18 4.4190 1.8690 7.2647 O.3 1 LGD -0.3856
50 N3 1.8695 1.6540 8.4193 N.pl3 1 LGD -0.8744
51 C30 -3.3869 2.2770 3.3981 C.2 1 LGD 0.9498
52 C31 5.5712 1.7477 6.4153 C.3 1 LGD 0.1334
53 S1 4.5705 -1.3605 -7.3598 S.O2 1 LGD 1.4152
54 O19 4.4050 -2.7184 -7.8493 O.co2 1 LGD -0.7276
55 O20 4.8193 -1.1808 -5.9412 O.co2 1 LGD -0.7276
56 O21 5.2315 -0.3987 -8.2240 O.co2 1 LGD -0.7276
57 O22 -2.4098 0.3796 -8.3709 O.3 1 LGD -0.5641
58 S2 -3.9526 -0.1173 -8.2490 S.O2 1 LGD 1.5395
59 O23 -3.8585 -1.4884 -7.7771 O.co2 1 LGD -0.7343
60 O24 -4.4761 0.0094 -9.5990 O.co2 1 LGD -0.7343
61 O25 -4.5371 0.8050 -7.2909 O.co2 1 LGD -0.7343
62 O26 1.2766 4.6433 3.4839 O.3 1 LGD -0.5156
63 S3 1.6400 6.0745 2.8002 S.O2 1 LGD 1.5520
64 O27 1.8701 6.9554 3.9334 O.co2 1 LGD -0.7602
65 O28 0.4602 6.4078 2.0212 O.co2 1 LGD -0.7602
66 O29 2.8297 5.8153 2.0061 O.co2 1 LGD -0.7602
67 S4 1.5547 -1.5891 5.3189 S.O2 1 LGD 1.5336
68 O30 -4.2092 -3.3449 1.6092 O.3 1 LGD -0.5675
69 S5 -4.5673 -4.5034 2.6924 S.O2 1 LGD 1.5484
70 O31 -4.7327 -5.7071 1.8943 O.co2 1 LGD -0.7583
71 O32 -5.7892 -4.0313 3.3207 O.co2 1 LGD -0.7583
72 O33 -3.4138 -4.5343 3.5756 O.co2 1 LGD -0.7583
73 O34 1.8759 -0.8517 6.5303 O.co2 1 LGD -0.7364
74 O35 2.6223 -1.6108 4.3353 O.co2 1 LGD -0.7364
75 O36 0.9400 -2.8833 5.5622 O.co2 1 LGD -0.7364
76 S6 2.3233 -2.6408 -0.3848 S.O2 1 LGD 1.5412
77 O37 2.4709 -2.3281 1.0257 O.co2 1 LGD -0.7364
78 O38 3.3193 -2.0218 -1.2419 O.co2 1 LGD -0.7364
79 O39 2.1069 -4.0544 -0.6427 O.co2 1 LGD -0.7364
80 O40 -4.2636 2.1311 2.5625 O.co2 1 LGD -0.8348
81 O41 -2.6862 3.2688 3.5128 O.co2 1 LGD -0.8348
82 O42 1.5696 -2.9904 -3.9975 O.co2 1 LGD -0.8036
83 O43 -0.0362 -4.1961 -3.1965 O.co2 1 LGD -0.8036
84 S7 0.7283 1.6490 0.7896 S.O2 1 LGD 1.4246
85 S8 1.7661 1.4493 10.1236 S.O2 1 LGD 1.4348
86 O44 -0.0522 2.1798 1.8912 O.co2 1 LGD -0.7239
87 O45 0.7445 2.4278 -0.4360 O.co2 1 LGD -0.7239
88 O46 1.9320 0.9335 1.1736 O.co2 1 LGD -0.7239
89 O47 1.1806 0.1225 10.1887 O.co2 1 LGD -0.7639
90 O48 0.9385 2.5877 10.4832 O.co2 1 LGD -0.7639
91 O49 3.1715 1.5761 10.4682 O.co2 1 LGD -0.7639
92 H1 0.6229 -0.7645 -10.8497 H 1 LGD -0.0100
93 H2 2.4797 -2.0898 -9.6263 H 1 LGD 0.0300
94 H3 1.9469 -2.5304 -7.1485 H 1 LGD 0.1233
95 H4 -0.3262 -1.5446 -7.0858 H 1 LGD 0.0584
96 H5 -0.1795 1.2616 -9.4789 H 1 LGD 0.0437
97 H6 0.1960 -0.5258 -3.6349 H 1 LGD 0.1869
98 H7 -1.8787 -0.2744 -5.8481 H 1 LGD 0.0078
99 H8 -0.4407 1.4734 -5.8267 H 1 LGD 0.4008
100 H9 -0.7311 -2.7200 -5.5416 H 1 LGD -0.0101
101 H10 -3.4242 -1.6587 -2.6486 H 1 LGD 0.0523
102 H11 -2.3816 0.7605 -3.0714 H 1 LGD 0.1004
103 H12 -0.1358 -3.0431 0.5885 H 1 LGD 0.0251
104 H13 -1.4438 -3.2705 -1.3958 H 1 LGD 0.0705
105 H14 0.4379 -0.9849 1.7384 H 1 LGD 0.1361
106 H15 -1.6911 -2.0258 2.3418 H 1 LGD 0.0127
107 H16 -3.6843 -2.1364 -0.7394 H 1 LGD 0.0348
108 H17 -3.6880 -0.7660 3.4516 H 1 LGD 0.0480
109 H18 -1.7091 -2.0595 4.3944 H 1 LGD 0.1206
110 H19 -3.1221 -0.5487 6.3538 H 1 LGD 0.3804
111 H20 -4.2107 0.9959 4.8740 H 1 LGD -0.0102
112 H21 -0.6468 1.5188 4.2679 H 1 LGD 0.1614
113 H22 -0.6259 -0.6246 6.4466 H 1 LGD 0.0401
114 H23 0.9275 5.3538 6.2032 H 1 LGD 0.4276
115 H24 0.2407 3.6597 7.9573 H 1 LGD 0.0521
116 H25 -0.1873 3.6989 5.4268 H 1 LGD 0.0876
117 H26 2.7291 3.5558 8.6055 H 1 LGD 0.0049
118 H27 3.7906 3.6494 6.4003 H 1 LGD -0.0099
119 H28 1.3344 2.0543 4.1101 H 1 LGD 0.1912
120 H29 0.6193 -3.0986 -10.2768 H 1 LGD 0.3405
121 H30 -1.8261 -0.3834 -10.2229 H 1 LGD 0.0232
122 H31 -1.4837 -1.4337 -8.8318 H 1 LGD 0.0232
123 H32 -3.6850 0.4011 -5.3094 H 1 LGD 0.4172
124 H33 -3.2797 -4.3779 0.0500 H 1 LGD 0.0350
125 H34 -2.1898 -3.8111 1.3317 H 1 LGD 0.0350
126 H35 2.8058 4.6208 4.8918 H 1 LGD 0.0178
127 H36 3.0847 3.6052 3.4614 H 1 LGD 0.0178
128 H37 2.7380 0.2386 -9.3108 H 1 LGD 0.4689
129 H38 2.8391 0.2325 -7.1078 H 1 LGD 0.4338
130 H39 -0.8427 0.4825 -0.5514 H 1 LGD 0.4035
131 H40 1.7104 0.8494 7.8266 H 1 LGD 0.5117
132 H41 6.3331 1.1313 6.9079 H 1 LGD 0.0039
133 H42 5.2997 1.2725 5.4642 H 1 LGD 0.0039
134 H43 5.9994 2.7371 6.2106 H 1 LGD 0.0039
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1