@COMMENT
LIGANDBOX_ID = D01844-13
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-13
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0042 -0.6113 -10.0157 C.3 1 LGD 0.0895
2 C2 1.4995 -1.8451 -9.1879 C.3 1 LGD 0.0952
3 C3 1.7458 -1.5009 -7.6889 C.3 1 LGD 0.2566
4 C4 0.5330 -0.7152 -7.1192 C.3 1 LGD 0.3091
5 O1 0.3173 0.4686 -7.9195 O.3 1 LGD -0.4289
6 C5 -0.0976 0.2209 -9.2863 C.3 1 LGD 0.1332
7 O2 0.8021 -0.3151 -5.7587 O.3 1 LGD -0.3299
8 C6 -0.1991 -0.5955 -4.7440 C.3 1 LGD 0.0956
9 C7 -1.5531 0.0770 -5.0872 C.3 1 LGD 0.0810
10 O3 -1.3914 1.4749 -5.3204 O.3 1 LGD -0.6126
11 C8 -0.3654 -2.1434 -4.5456 C.3 1 LGD -0.0092
12 O4 -1.7213 -2.4492 -4.0949 O.3 1 LGD -0.4656
13 C9 -2.3595 -1.5080 -3.1937 C.3 1 LGD 0.3464
14 C10 -2.6062 -0.1711 -3.9636 C.3 1 LGD 0.1328
15 O5 0.0539 -3.1545 0.6642 O.3 1 LGD -0.6063
16 C11 -0.1823 -1.9973 -0.1741 C.3 1 LGD 0.2053
17 C12 -1.4685 -2.2661 -1.0156 C.3 1 LGD 0.1115
18 O6 -1.5092 -1.2509 -2.0495 O.3 1 LGD -0.4025
19 C13 -0.3770 -0.7534 0.7382 C.3 1 LGD 0.2706
20 C14 -1.6369 -0.9697 1.6115 C.3 1 LGD 0.3144
21 O7 -2.7578 -1.0396 0.7055 O.3 1 LGD -0.4498
22 C15 -2.7905 -2.1985 -0.1650 C.3 1 LGD 0.1472
23 O8 -1.8322 0.1452 2.5025 O.3 1 LGD -0.3235
24 C16 -2.7589 -0.0823 3.5963 C.3 1 LGD 0.1033
25 C17 -2.0774 -0.9892 4.6735 C.3 1 LGD 0.1043
26 O9 -3.0251 -1.2552 5.7100 O.3 1 LGD -0.6307
27 C18 -3.1615 1.3093 4.2114 C.3 1 LGD 0.0194
28 O10 -2.3007 1.6313 5.3459 O.3 1 LGD -0.5092
29 C19 -0.9212 1.2598 5.1682 C.3 1 LGD 0.3224
30 C20 -0.8298 -0.2821 5.2902 C.3 1 LGD 0.1726
31 O11 1.3064 5.1232 7.0225 O.3 1 LGD -0.6613
32 C21 0.9989 3.7417 7.2216 C.3 1 LGD 0.1182
33 C22 0.5284 3.1000 5.8769 C.3 1 LGD 0.1099
34 O12 -0.1185 1.8518 6.2061 O.3 1 LGD -0.4133
35 C23 2.2430 3.0154 7.8226 C.3 1 LGD 0.2953
36 C24 3.3411 2.8226 6.7386 C.3 1 LGD 0.3213
37 O13 2.7654 2.1107 5.6220 O.3 1 LGD -0.3704
38 C25 1.7178 2.7975 4.8984 C.3 1 LGD 0.1353
39 O14 0.5540 -2.9108 -9.2843 O.3 1 LGD -0.5713
40 C26 -1.5167 -0.4066 -9.3197 C.3 1 LGD 0.1736
41 O15 -3.9058 -0.1847 -4.5588 O.3 1 LGD -0.6467
42 C27 -3.0801 -3.4725 0.6747 C.3 1 LGD 0.1530
43 O16 0.3435 -0.6870 4.5612 O.3 1 LGD -0.5280
44 C28 2.3066 4.0347 4.1710 C.3 1 LGD 0.1643
45 O17 2.1096 0.2459 -10.3021 O.3 1 LGD -0.6463
46 N1 2.9959 -0.7290 -7.5662 N.pl3 1 LGD -0.8776
47 C29 0.6952 -2.7961 -3.6332 C.2 1 LGD 0.9137
48 N2 0.8196 -0.5006 1.5505 N.pl3 1 LGD -0.8683
49 O18 4.4206 2.0393 7.2827 O.3 1 LGD -0.3872
50 N3 1.8510 1.7214 8.4016 N.pl3 1 LGD -0.8720
51 C30 -3.2139 2.4530 3.1732 C.2 1 LGD 0.9458
52 C31 5.5643 1.9272 6.4202 C.3 1 LGD 0.1330
53 S1 4.2451 -1.1102 -6.4356 S.O2 1 LGD 1.4195
54 O19 3.9848 -2.4997 -6.1022 O.co2 1 LGD -0.7072
55 O20 3.9281 -0.1208 -5.4218 O.co2 1 LGD -0.7072
56 O21 5.3996 -0.8012 -7.2608 O.co2 1 LGD -0.7072
57 O22 -2.3918 0.4287 -8.5413 O.3 1 LGD -0.5646
58 S2 -3.9538 0.0009 -8.3999 S.O2 1 LGD 1.5404
59 O23 -3.9204 -1.4001 -8.0155 O.co2 1 LGD -0.7319
60 O24 -4.5053 0.2381 -9.7234 O.co2 1 LGD -0.7319
61 O25 -4.4639 0.8905 -7.3708 O.co2 1 LGD -0.7319
62 O26 1.2772 4.6178 3.3536 O.3 1 LGD -0.5084
63 S3 1.6260 5.9862 2.5452 S.O2 1 LGD 1.5559
64 O27 1.7634 6.9873 3.5901 O.co2 1 LGD -0.7636
65 O28 0.4795 6.1899 1.6768 O.co2 1 LGD -0.7636
66 O29 2.8652 5.6970 1.8422 O.co2 1 LGD -0.7636
67 S4 1.4078 -1.6734 5.2945 S.O2 1 LGD 1.5343
68 O30 -4.2730 -3.2388 1.4478 O.3 1 LGD -0.5802
69 S5 -4.7029 -4.3455 2.5589 S.O2 1 LGD 1.5490
70 O31 -4.8199 -5.5852 1.8088 O.co2 1 LGD -0.7590
71 O32 -5.9624 -3.8451 3.0830 O.co2 1 LGD -0.7590
72 O33 -3.6113 -4.3352 3.5176 O.co2 1 LGD -0.7590
73 O34 1.8902 -0.8985 6.4265 O.co2 1 LGD -0.7340
74 O35 2.4085 -1.9305 4.2744 O.co2 1 LGD -0.7340
75 O36 0.6221 -2.8372 5.6693 O.co2 1 LGD -0.7340
76 S6 1.4796 -3.9441 0.6536 S.O2 1 LGD 1.5458
77 O37 1.3158 -4.9421 -0.3885 O.co2 1 LGD -0.7357
78 O38 1.5688 -4.5075 1.9894 O.co2 1 LGD -0.7357
79 O39 2.4857 -2.9375 0.3615 O.co2 1 LGD -0.7357
80 O40 -4.1213 2.4101 2.3591 O.co2 1 LGD -0.8393
81 O41 -2.4002 3.3568 3.2685 O.co2 1 LGD -0.8393
82 O42 1.6854 -2.1458 -3.3481 O.co2 1 LGD -0.7796
83 O43 0.4506 -3.9165 -3.2211 O.co2 1 LGD -0.7796
84 S7 1.7353 0.9422 1.3432 S.O2 1 LGD 1.4223
85 S8 1.8366 1.4618 10.1021 S.O2 1 LGD 1.4337
86 O44 2.0845 0.8149 -0.0608 O.co2 1 LGD -0.7295
87 O45 2.7847 0.7444 2.3266 O.co2 1 LGD -0.7295
88 O46 0.7080 1.9265 1.6325 O.co2 1 LGD -0.7295
89 O47 1.1152 0.2035 10.1626 O.co2 1 LGD -0.7626
90 O48 1.1714 2.6670 10.5669 O.co2 1 LGD -0.7626
91 O49 3.2680 1.4109 10.3430 O.co2 1 LGD -0.7626
92 H1 0.5952 -0.9745 -10.9672 H 1 LGD -0.0050
93 H2 2.4462 -2.1953 -9.6196 H 1 LGD 0.0191
94 H3 1.8288 -2.4417 -7.1320 H 1 LGD 0.1337
95 H4 -0.3584 -1.3501 -7.1504 H 1 LGD 0.0520
96 H5 -0.1749 1.1873 -9.8007 H 1 LGD 0.0310
97 H6 0.1486 -0.1648 -3.7958 H 1 LGD 0.1801
98 H7 -1.9317 -0.3942 -6.0027 H 1 LGD 0.0083
99 H8 -0.8038 1.5604 -6.0930 H 1 LGD 0.3999
100 H9 -0.2381 -2.6371 -5.5158 H 1 LGD -0.0014
101 H10 -3.3206 -1.9131 -2.8598 H 1 LGD 0.0560
102 H11 -2.5490 0.6517 -3.2391 H 1 LGD 0.0885
103 H12 0.6610 -1.8288 -0.8559 H 1 LGD 0.1347
104 H13 -1.3851 -3.2563 -1.4807 H 1 LGD 0.0753
105 H14 -0.5567 0.1185 0.0957 H 1 LGD 0.0846
106 H15 -1.5440 -1.8951 2.1883 H 1 LGD 0.0524
107 H16 -3.6395 -2.0848 -0.8483 H 1 LGD 0.0193
108 H17 -3.6626 -0.5745 3.2136 H 1 LGD 0.0497
109 H18 -1.7689 -1.9427 4.2271 H 1 LGD 0.1350
110 H19 -3.2118 -0.4017 6.1402 H 1 LGD 0.3721
111 H20 -4.1840 1.2096 4.5973 H 1 LGD -0.0059
112 H21 -0.5813 1.5828 4.1769 H 1 LGD 0.1506
113 H22 -0.7363 -0.5563 6.3496 H 1 LGD 0.0361
114 H23 0.6248 5.4912 6.4327 H 1 LGD 0.4090
115 H24 0.1735 3.6760 7.9422 H 1 LGD 0.0383
116 H25 -0.1988 3.7647 5.3918 H 1 LGD 0.0791
117 H26 2.6598 3.6446 8.6195 H 1 LGD 0.0043
118 H27 3.7280 3.7949 6.4140 H 1 LGD -0.0125
119 H28 1.3641 2.1248 4.1112 H 1 LGD 0.1919
120 H29 0.5966 -3.2516 -10.1946 H 1 LGD 0.3385
121 H30 -1.8691 -0.4567 -10.3576 H 1 LGD 0.0268
122 H31 -1.5027 -1.4236 -8.9125 H 1 LGD 0.0268
123 H32 -3.8416 0.2811 -5.4144 H 1 LGD 0.4197
124 H33 -3.2275 -4.3283 0.0042 H 1 LGD 0.0519
125 H34 -2.2410 -3.7005 1.3408 H 1 LGD 0.0519
126 H35 2.6756 4.7754 4.8889 H 1 LGD 0.0163
127 H36 3.1465 3.7141 3.5419 H 1 LGD 0.0163
128 H37 2.0945 0.9530 -9.6330 H 1 LGD 0.4359
129 H38 3.1477 0.0561 -8.1769 H 1 LGD 0.3686
130 H39 1.1412 -1.1865 2.2188 H 1 LGD 0.4408
131 H40 1.6674 0.9349 7.7931 H 1 LGD 0.5109
132 H41 6.3530 1.3527 6.9211 H 1 LGD 0.0056
133 H42 5.2951 1.4110 5.4899 H 1 LGD 0.0056
134 H43 5.9564 2.9224 6.1753 H 1 LGD 0.0056
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1