@COMMENT
LIGANDBOX_ID = D01844-14
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-14
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 3.2443 2.0268 -9.7418 C.3 1 LGD 0.0853
2 C2 3.7829 0.8296 -8.8880 C.3 1 LGD 0.0967
3 C3 4.0582 1.2238 -7.4057 C.3 1 LGD 0.2559
4 C4 2.8462 2.0038 -6.8309 C.3 1 LGD 0.3099
5 O1 2.5894 3.1576 -7.6630 O.3 1 LGD -0.4444
6 C5 2.1469 2.8628 -9.0111 C.3 1 LGD 0.1330
7 O2 3.1441 2.4578 -5.4936 O.3 1 LGD -0.3466
8 C6 2.1509 2.2402 -4.4565 C.3 1 LGD 0.0964
9 C7 0.7909 2.8854 -4.8336 C.3 1 LGD 0.0726
10 O3 0.9456 4.2678 -5.1493 O.3 1 LGD -0.6300
11 C8 1.9980 0.7080 -4.1556 C.3 1 LGD -0.0106
12 O4 0.6443 0.4248 -3.6867 O.3 1 LGD -0.4360
13 C9 0.0015 1.4188 -2.8475 C.3 1 LGD 0.3470
14 C10 -0.2589 2.7004 -3.6968 C.3 1 LGD 0.1333
15 O5 2.6978 -0.2429 0.5456 O.3 1 LGD -0.5302
16 C11 2.1588 1.0521 0.1902 C.3 1 LGD 0.2239
17 C12 0.8229 0.8445 -0.6043 C.3 1 LGD 0.1245
18 O6 0.8529 1.7594 -1.7254 O.3 1 LGD -0.4506
19 C13 2.0343 1.9273 1.4675 C.3 1 LGD 0.1939
20 C14 0.7288 1.6416 2.2515 C.3 1 LGD 0.3359
21 O7 -0.3759 1.8855 1.3603 O.3 1 LGD -0.4023
22 C15 -0.5285 1.0618 0.1772 C.3 1 LGD 0.1345
23 O8 0.6776 0.2863 2.7650 O.3 1 LGD -0.3857
24 C16 1.4370 0.0011 3.9681 C.3 1 LGD 0.1257
25 C17 0.7779 0.7111 5.2010 C.3 1 LGD 0.1002
26 O9 1.6297 0.5262 6.3341 O.3 1 LGD -0.6607
27 C18 1.5033 -1.5617 4.1864 C.3 1 LGD 0.0108
28 O10 0.5406 -1.9579 5.1999 O.3 1 LGD -0.5177
29 C19 -0.7588 -1.3532 5.0682 C.3 1 LGD 0.3268
30 C20 -0.6330 0.1244 5.5250 C.3 1 LGD 0.1711
31 O11 -2.8353 -5.5121 6.3202 O.3 1 LGD -0.6751
32 C21 -2.6690 -4.1340 6.6635 C.3 1 LGD 0.1167
33 C22 -2.1464 -3.3317 5.4323 C.3 1 LGD 0.1100
34 O12 -1.6774 -2.0548 5.9232 O.3 1 LGD -0.4062
35 C23 -4.0162 -3.5644 7.2059 C.3 1 LGD 0.2902
36 C24 -5.0319 -3.3432 6.0462 C.3 1 LGD 0.3225
37 O13 -4.4176 -2.5139 5.0321 O.3 1 LGD -0.3768
38 C25 -3.2589 -3.0687 4.3634 C.3 1 LGD 0.1406
39 O14 2.8529 -0.2532 -8.9289 O.3 1 LGD -0.5661
40 C26 0.7374 2.2146 -8.9916 C.3 1 LGD 0.1742
41 O15 -1.5604 2.6387 -4.2837 O.3 1 LGD -0.6243
42 C27 -1.2896 -0.2472 0.4988 C.3 1 LGD 0.1770
43 O16 -1.6186 0.8886 4.8006 O.3 1 LGD -0.5294
44 C28 -3.6832 -4.3058 3.5246 C.3 1 LGD 0.1702
45 O17 4.3257 2.8926 -10.0868 O.3 1 LGD -0.6458
46 N1 5.2926 2.0255 -7.3263 N.pl3 1 LGD -0.8763
47 C29 3.0651 0.1338 -3.1962 C.2 1 LGD 0.9135
48 N2 2.0492 3.3417 1.0631 N.pl3 1 LGD -0.8866
49 O18 -6.1986 -2.6679 6.5543 O.3 1 LGD -0.3892
50 N3 -3.7803 -2.3143 7.9428 N.pl3 1 LGD -0.8771
51 C30 1.3539 -2.4273 2.9104 C.2 1 LGD 0.9385
52 C31 -7.2803 -2.5680 5.6140 C.3 1 LGD 0.1338
53 S1 6.6512 1.5807 -6.3576 S.O2 1 LGD 1.4234
54 O19 6.4681 0.1541 -6.1543 O.co2 1 LGD -0.7149
55 O20 6.3954 2.4457 -5.2203 O.co2 1 LGD -0.7149
56 O21 7.7160 2.0223 -7.2410 O.co2 1 LGD -0.7149
57 O22 -0.1374 3.0794 -8.2461 O.3 1 LGD -0.5751
58 S2 -1.6947 2.6474 -8.0706 S.O2 1 LGD 1.5367
59 O23 -1.6459 1.2710 -7.6076 O.co2 1 LGD -0.7262
60 O24 -2.2565 2.8047 -9.4017 O.co2 1 LGD -0.7262
61 O25 -2.2053 3.5901 -7.0904 O.co2 1 LGD -0.7262
62 O26 -2.5286 -4.8196 2.8391 O.3 1 LGD -0.5015
63 S3 -2.6865 -6.2185 2.0229 S.O2 1 LGD 1.5554
64 O27 -2.7830 -7.2223 3.0698 O.co2 1 LGD -0.7635
65 O28 -1.4744 -6.3080 1.2274 O.co2 1 LGD -0.7635
66 O29 -3.9043 -6.0642 1.2437 O.co2 1 LGD -0.7635
67 S4 -2.8915 1.4879 5.6210 S.O2 1 LGD 1.5508
68 O30 -2.5289 0.1056 1.1457 O.3 1 LGD -0.5706
69 S5 -3.7881 -0.9238 1.0753 S.O2 1 LGD 1.5364
70 O31 -3.1961 -2.2477 0.9936 O.co2 1 LGD -0.7480
71 O32 -4.4971 -0.5202 -0.1274 O.co2 1 LGD -0.7480
72 O33 -4.5209 -0.6689 2.3031 O.co2 1 LGD -0.7480
73 O34 -3.4959 0.3334 6.2650 O.co2 1 LGD -0.7485
74 O35 -3.7164 2.1030 4.5959 O.co2 1 LGD -0.7485
75 O36 -2.2973 2.4346 6.5503 O.co2 1 LGD -0.7485
76 S6 4.2890 -0.4196 0.8907 S.O2 1 LGD 1.5710
77 O37 4.6337 -1.7127 0.3257 O.co2 1 LGD -0.7516
78 O38 4.3468 -0.3792 2.3417 O.co2 1 LGD -0.7516
79 O39 4.9609 0.7016 0.2552 O.co2 1 LGD -0.7516
80 O40 0.2357 -2.7941 2.5905 O.co2 1 LGD -0.8051
81 O41 2.3823 -2.7927 2.3710 O.co2 1 LGD -0.8051
82 O42 4.0781 0.7868 -3.0155 O.co2 1 LGD -0.7776
83 O43 2.8048 -0.9210 -2.6442 O.co2 1 LGD -0.7776
84 S7 2.8727 4.5452 1.9798 S.O2 1 LGD 1.4251
85 S8 -3.8276 -2.2618 9.6612 S.O2 1 LGD 1.4333
86 O44 2.1016 4.4888 3.2092 O.co2 1 LGD -0.7537
87 O45 2.6757 5.6958 1.1160 O.co2 1 LGD -0.7537
88 O46 4.2009 3.9635 2.0580 O.co2 1 LGD -0.7537
89 O47 -3.3883 -0.8975 9.8911 O.co2 1 LGD -0.7638
90 O48 -2.9138 -3.3428 9.9879 O.co2 1 LGD -0.7638
91 O49 -5.2331 -2.5597 9.8758 O.co2 1 LGD -0.7638
92 H1 2.8166 1.6254 -10.6694 H 1 LGD 0.0013
93 H2 4.7247 0.4823 -9.3326 H 1 LGD 0.0216
94 H3 4.1702 0.3039 -6.8194 H 1 LGD 0.1403
95 H4 1.9678 1.3502 -6.8158 H 1 LGD 0.0647
96 H5 2.0422 3.8122 -9.5517 H 1 LGD 0.0283
97 H6 2.5033 2.7316 -3.5403 H 1 LGD 0.1551
98 H7 0.4103 2.3590 -5.7174 H 1 LGD 0.0223
99 H8 1.4922 4.3064 -5.9551 H 1 LGD 0.3966
100 H9 2.1328 0.1515 -5.0903 H 1 LGD 0.0050
101 H10 -0.9548 1.0264 -2.4836 H 1 LGD 0.0932
102 H11 -0.2072 3.5666 -3.0246 H 1 LGD 0.0565
103 H12 2.8605 1.5402 -0.4982 H 1 LGD 0.0942
104 H13 0.8317 -0.1803 -0.9983 H 1 LGD 0.1110
105 H14 2.8929 1.7464 2.1236 H 1 LGD 0.0838
106 H15 0.6478 2.3482 3.0827 H 1 LGD 0.0678
107 H16 -1.2037 1.6127 -0.4882 H 1 LGD 0.0266
108 H17 2.4590 0.3780 3.8476 H 1 LGD 0.0733
109 H18 0.6810 1.7870 5.0142 H 1 LGD 0.0939
110 H19 1.6735 -0.4345 6.4906 H 1 LGD 0.3994
111 H20 2.5014 -1.7838 4.5856 H 1 LGD 0.0319
112 H21 -1.0930 -1.3896 4.0253 H 1 LGD 0.1397
113 H22 -0.8114 0.1968 6.6063 H 1 LGD 0.0317
114 H23 -2.3198 -5.6783 5.5104 H 1 LGD 0.4320
115 H24 -1.9149 -4.0700 7.4584 H 1 LGD 0.0560
116 H25 -1.3090 -3.8772 4.9771 H 1 LGD 0.0905
117 H26 -4.4459 -4.2999 7.8980 H 1 LGD 0.0041
118 H27 -5.3318 -4.3071 5.6207 H 1 LGD -0.0125
119 H28 -2.8859 -2.3265 3.6490 H 1 LGD 0.1787
120 H29 2.7862 -0.5402 -9.8561 H 1 LGD 0.3436
121 H30 0.3716 2.1064 -10.0203 H 1 LGD 0.0316
122 H31 0.7706 1.2203 -8.5322 H 1 LGD 0.0316
123 H32 -1.5050 3.0424 -5.1708 H 1 LGD 0.4137
124 H33 -1.4966 -0.7646 -0.4468 H 1 LGD 0.0672
125 H34 -0.6986 -0.9162 1.1317 H 1 LGD 0.0672
126 H35 -4.1101 -5.0873 4.1620 H 1 LGD 0.0122
127 H36 -4.4470 -4.0030 2.7974 H 1 LGD 0.0122
128 H37 4.3491 3.5930 -9.4115 H 1 LGD 0.4301
129 H38 5.3400 2.9025 -7.8168 H 1 LGD 0.3715
130 H39 1.5286 3.6332 0.2509 H 1 LGD 0.4121
131 H40 -3.5848 -1.4603 7.4358 H 1 LGD 0.5118
132 H41 -8.1403 -2.0785 6.0871 H 1 LGD 0.0008
133 H42 -6.9781 -1.9747 4.7417 H 1 LGD 0.0008
134 H43 -7.5864 -3.5666 5.2773 H 1 LGD 0.0008
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1