@COMMENT
LIGANDBOX_ID = D01844-15
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-15
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.2244 -0.7709 -9.8018 C.3 1 LGD 0.0863
2 C2 1.6975 -1.9865 -8.9361 C.3 1 LGD 0.0968
3 C3 1.9541 -1.6001 -7.4485 C.3 1 LGD 0.2551
4 C4 0.7623 -0.7671 -6.9005 C.3 1 LGD 0.3102
5 O1 0.5613 0.3895 -7.7439 O.3 1 LGD -0.4309
6 C5 0.1364 0.1000 -9.0993 C.3 1 LGD 0.1328
7 O2 1.0464 -0.3184 -5.5564 O.3 1 LGD -0.3403
8 C6 0.0314 -0.5224 -4.5358 C.3 1 LGD 0.0920
9 C7 -1.3013 0.1637 -4.9304 C.3 1 LGD 0.0798
10 O3 -1.0966 1.5442 -5.2261 O.3 1 LGD -0.6130
11 C8 -0.1634 -2.0526 -4.2666 C.3 1 LGD -0.0088
12 O4 -1.5464 -2.3234 -3.8918 O.3 1 LGD -0.4469
13 C9 -2.2475 -1.3640 -3.0549 C.3 1 LGD 0.3412
14 C10 -2.3660 0.0005 -3.8072 C.3 1 LGD 0.1331
15 O5 -0.0223 -3.3737 0.6653 O.3 1 LGD -0.6253
16 C11 -0.2316 -2.0999 0.0134 C.3 1 LGD 0.2077
17 C12 -1.5283 -2.2533 -0.8454 C.3 1 LGD 0.1437
18 O6 -1.5500 -1.1574 -1.7999 O.3 1 LGD -0.4168
19 C13 -0.3502 -0.9829 1.1049 C.3 1 LGD 0.2465
20 C14 -1.6825 -1.1536 1.8853 C.3 1 LGD 0.3137
21 O7 -2.7727 -1.1286 0.9447 O.3 1 LGD -0.4527
22 C15 -2.7950 -2.2841 0.0869 C.3 1 LGD 0.1345
23 O8 -1.8570 -0.0764 2.8259 O.3 1 LGD -0.3020
24 C16 -2.6976 -0.3715 3.9657 C.3 1 LGD 0.1066
25 C17 -1.8732 -1.2267 4.9779 C.3 1 LGD 0.0906
26 O9 -2.7231 -1.5860 6.0695 O.3 1 LGD -0.6619
27 C18 -3.1697 0.9794 4.6225 C.3 1 LGD 0.0263
28 O10 -2.2690 1.3620 5.7056 O.3 1 LGD -0.5045
29 C19 -0.8772 1.1108 5.4390 C.3 1 LGD 0.3249
30 C20 -0.6506 -0.4203 5.5176 C.3 1 LGD 0.1700
31 O11 1.4092 4.9899 7.2204 O.3 1 LGD -0.6587
32 C21 1.0772 3.6157 7.4297 C.3 1 LGD 0.1184
33 C22 0.5825 2.9722 6.0945 C.3 1 LGD 0.1151
34 O12 -0.0688 1.7342 6.4517 O.3 1 LGD -0.4195
35 C23 2.3114 2.8671 8.0246 C.3 1 LGD 0.2952
36 C24 3.3978 2.6502 6.9334 C.3 1 LGD 0.3246
37 O13 2.8018 1.9495 5.8175 O.3 1 LGD -0.3849
38 C25 1.7578 2.6522 5.1014 C.3 1 LGD 0.1309
39 O14 0.7319 -3.0366 -8.9979 O.3 1 LGD -0.5666
40 C26 -1.2907 -0.5100 -9.1070 C.3 1 LGD 0.1748
41 O15 -3.6653 0.1254 -4.3885 O.3 1 LGD -0.6161
42 C27 -4.1763 -2.3341 -0.6022 C.3 1 LGD 0.1829
43 O16 0.5048 -0.7107 4.7063 O.3 1 LGD -0.5237
44 C28 2.3670 3.8832 4.3786 C.3 1 LGD 0.1613
45 O17 2.3438 0.0597 -10.1106 O.3 1 LGD -0.6498
46 N1 3.2242 -0.8585 -7.3507 N.pl3 1 LGD -0.8791
47 C29 0.8453 -2.6730 -3.2747 C.2 1 LGD 0.9209
48 N2 -0.2760 0.3432 0.4668 N.pl3 1 LGD -0.8705
49 O18 4.4625 1.8448 7.4746 O.3 1 LGD -0.3840
50 N3 1.9023 1.5805 8.6086 N.pl3 1 LGD -0.8719
51 C30 -3.3986 2.1278 3.6132 C.2 1 LGD 0.9516
52 C31 5.6143 1.7343 6.6238 C.3 1 LGD 0.1344
53 S1 4.4563 -1.2243 -6.1961 S.O2 1 LGD 1.4228
54 O19 4.1211 -2.5663 -5.7530 O.co2 1 LGD -0.7111
55 O20 4.2065 -0.1404 -5.2633 O.co2 1 LGD -0.7111
56 O21 5.6206 -1.0483 -7.0461 O.co2 1 LGD -0.7111
57 O22 -2.1593 0.3798 -8.3844 O.3 1 LGD -0.5690
58 S2 -3.7269 -0.0222 -8.2306 S.O2 1 LGD 1.5337
59 O23 -3.7100 -1.3884 -7.7364 O.co2 1 LGD -0.7255
60 O24 -4.2598 0.1137 -9.5759 O.co2 1 LGD -0.7255
61 O25 -4.2409 0.9510 -7.2824 O.co2 1 LGD -0.7255
62 O26 1.3420 4.5102 3.5900 O.3 1 LGD -0.5157
63 S3 1.7200 5.8838 2.8038 S.O2 1 LGD 1.5515
64 O27 1.9153 6.8557 3.8669 O.co2 1 LGD -0.7575
65 O28 0.5621 6.1461 1.9670 O.co2 1 LGD -0.7575
66 O29 2.9328 5.5677 2.0671 O.co2 1 LGD -0.7575
67 S4 1.6668 -1.6563 5.3413 S.O2 1 LGD 1.5343
68 O30 -4.2385 -3.5200 -1.4169 O.3 1 LGD -0.5674
69 S5 -5.6175 -3.8305 -2.2226 S.O2 1 LGD 1.5542
70 O31 -6.6307 -3.9197 -1.1841 O.co2 1 LGD -0.7619
71 O32 -5.3516 -5.0862 -2.9034 O.co2 1 LGD -0.7619
72 O33 -5.7827 -2.6921 -3.1101 O.co2 1 LGD -0.7619
73 O34 2.0665 -0.9695 6.5591 O.co2 1 LGD -0.7326
74 O35 2.6934 -1.6936 4.3151 O.co2 1 LGD -0.7326
75 O36 1.0026 -2.9272 5.5768 O.co2 1 LGD -0.7326
76 S6 1.4575 -3.8474 1.1628 S.O2 1 LGD 1.5427
77 O37 1.7761 -4.9593 0.2838 O.co2 1 LGD -0.7338
78 O38 1.2387 -4.2430 2.5426 O.co2 1 LGD -0.7338
79 O39 2.3253 -2.6938 0.9977 O.co2 1 LGD -0.7338
80 O40 -4.2658 1.9526 2.7733 O.co2 1 LGD -0.8311
81 O41 -2.7507 3.1523 3.7489 O.co2 1 LGD -0.8311
82 O42 1.8247 -2.0152 -2.9689 O.co2 1 LGD -0.7954
83 O43 0.5786 -3.7762 -2.8301 O.co2 1 LGD -0.7954
84 S7 0.7482 1.6103 1.0423 S.O2 1 LGD 1.4236
85 S8 1.8883 1.3229 10.3093 S.O2 1 LGD 1.4349
86 O44 -0.1421 2.1910 2.0295 O.co2 1 LGD -0.7225
87 O45 0.9075 2.3604 -0.1908 O.co2 1 LGD -0.7225
88 O46 1.8902 0.8864 1.5716 O.co2 1 LGD -0.7225
89 O47 1.1605 0.0682 10.3706 O.co2 1 LGD -0.7627
90 O48 1.2293 2.5319 10.7727 O.co2 1 LGD -0.7627
91 O49 3.3196 1.2649 10.5494 O.co2 1 LGD -0.7627
92 H1 0.8105 -1.1555 -10.7428 H 1 LGD -0.0046
93 H2 2.6362 -2.3681 -9.3588 H 1 LGD 0.0143
94 H3 2.0135 -2.5260 -6.8645 H 1 LGD 0.1319
95 H4 -0.1405 -1.3866 -6.9016 H 1 LGD 0.0612
96 H5 0.0698 1.0486 -9.6472 H 1 LGD 0.0295
97 H6 0.3766 -0.0525 -3.6053 H 1 LGD 0.1736
98 H7 -1.6870 -0.3408 -5.8247 H 1 LGD 0.0150
99 H8 -0.4884 1.5763 -5.9868 H 1 LGD 0.3949
100 H9 0.0139 -2.5943 -5.2026 H 1 LGD 0.0017
101 H10 -3.2535 -1.7417 -2.8647 H 1 LGD 0.0929
102 H11 -2.2226 0.8041 -3.0732 H 1 LGD 0.0875
103 H12 0.6124 -1.8806 -0.6517 H 1 LGD 0.1298
104 H13 -1.4697 -3.2055 -1.3870 H 1 LGD 0.0911
105 H14 0.4746 -1.0942 1.8187 H 1 LGD 0.1269
106 H15 -1.6723 -2.1136 2.4135 H 1 LGD 0.0120
107 H16 -2.7264 -3.1847 0.7114 H 1 LGD 0.0299
108 H17 -3.5823 -0.9300 3.6331 H 1 LGD 0.0183
109 H18 -1.5126 -2.1424 4.4934 H 1 LGD 0.1184
110 H19 -2.9258 -0.7602 6.5449 H 1 LGD 0.3881
111 H20 -4.1520 0.7893 5.0733 H 1 LGD -0.0197
112 H21 -0.6208 1.4901 4.4427 H 1 LGD 0.1643
113 H22 -0.4654 -0.7011 6.5629 H 1 LGD 0.0378
114 H23 0.7284 5.3688 6.6366 H 1 LGD 0.4120
115 H24 0.2573 3.5700 8.1582 H 1 LGD 0.0389
116 H25 -0.1470 3.6384 5.6151 H 1 LGD 0.0840
117 H26 2.7451 3.4897 8.8176 H 1 LGD 0.0068
118 H27 3.8041 3.6142 6.6082 H 1 LGD -0.0085
119 H28 1.3860 1.9899 4.3104 H 1 LGD 0.1906
120 H29 0.7332 -3.3758 -9.9097 H 1 LGD 0.3387
121 H30 -1.6371 -0.6140 -10.1429 H 1 LGD 0.0277
122 H31 -1.2942 -1.5026 -8.6432 H 1 LGD 0.0277
123 H32 -3.5512 0.4542 -5.3002 H 1 LGD 0.4101
124 H33 -4.9552 -2.3736 0.1696 H 1 LGD 0.0335
125 H34 -4.3413 -1.4313 -1.2022 H 1 LGD 0.0335
126 H35 2.7721 4.6024 5.0987 H 1 LGD 0.0175
127 H36 3.1857 3.5481 3.7294 H 1 LGD 0.0175
128 H37 2.3384 0.7855 -9.4618 H 1 LGD 0.4353
129 H38 3.4049 -0.1115 -8.0004 H 1 LGD 0.3689
130 H39 -0.8787 0.5443 -0.3156 H 1 LGD 0.4070
131 H40 1.7194 0.7927 8.0020 H 1 LGD 0.5067
132 H41 6.3882 1.1372 7.1216 H 1 LGD 0.0045
133 H42 5.3486 1.2432 5.6791 H 1 LGD 0.0045
134 H43 6.0243 2.7287 6.4065 H 1 LGD 0.0045
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1