@COMMENT
LIGANDBOX_ID = D01844-16
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-16
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -6.8728 -5.9997 -6.6846 C.3 1 LGD 0.0883
2 C2 -7.1700 -4.4649 -6.5906 C.3 1 LGD 0.0968
3 C3 -6.8395 -3.8756 -5.1870 C.3 1 LGD 0.2566
4 C4 -5.4289 -4.3447 -4.7360 C.3 1 LGD 0.3105
5 O1 -5.3863 -5.7893 -4.7415 O.3 1 LGD -0.4319
6 C5 -5.5057 -6.4051 -6.0480 C.3 1 LGD 0.1326
7 O2 -5.1595 -3.8784 -3.3974 O.3 1 LGD -0.3348
8 C6 -3.8979 -3.2067 -3.1388 C.3 1 LGD 0.0963
9 C7 -2.6913 -4.1134 -3.4962 C.3 1 LGD 0.0802
10 O3 -2.7803 -5.3760 -2.8389 O.3 1 LGD -0.6150
11 C8 -3.8322 -1.8403 -3.9078 C.3 1 LGD -0.0078
12 O4 -2.4416 -1.4957 -4.1980 O.3 1 LGD -0.4573
13 C9 -1.4372 -1.8578 -3.2141 C.3 1 LGD 0.3466
14 C10 -1.3387 -3.4150 -3.1553 C.3 1 LGD 0.1344
15 O5 -2.7555 1.9218 -0.6209 O.3 1 LGD -0.5821
16 C11 -2.5597 0.4930 -0.5193 C.3 1 LGD 0.2157
17 C12 -1.6098 0.0636 -1.6840 C.3 1 LGD 0.1195
18 O6 -1.8088 -1.3531 -1.9086 O.3 1 LGD -0.4207
19 C13 -1.9836 0.1563 0.8892 C.3 1 LGD 0.2354
20 C14 -0.5232 0.6629 0.9791 C.3 1 LGD 0.3104
21 O7 0.2409 -0.0130 -0.0421 O.3 1 LGD -0.4418
22 C15 -0.0912 0.3435 -1.4070 C.3 1 LGD 0.1449
23 O8 0.0320 0.3426 2.2690 O.3 1 LGD -0.3808
24 C16 1.1908 1.1145 2.6578 C.3 1 LGD 0.0935
25 C17 2.1070 0.2050 3.5326 C.3 1 LGD 0.1425
26 O9 1.3727 -0.2703 4.6648 O.3 1 LGD -0.6099
27 C18 0.7370 2.4093 3.4330 C.3 1 LGD -0.0371
28 O10 1.6886 2.6904 4.5013 O.3 1 LGD -0.4839
29 C19 3.0692 2.5162 4.1271 C.3 1 LGD 0.3268
30 C20 3.3563 0.9976 4.0275 C.3 1 LGD 0.1469
31 O11 5.3517 6.3801 5.9005 O.3 1 LGD -0.6567
32 C21 5.0499 4.9997 6.1124 C.3 1 LGD 0.1195
33 C22 4.5489 4.3481 4.7830 C.3 1 LGD 0.1146
34 O12 3.9183 3.0955 5.1346 O.3 1 LGD -0.4223
35 C23 6.3061 4.2756 6.6878 C.3 1 LGD 0.2950
36 C24 7.3762 4.0692 5.5773 C.3 1 LGD 0.3218
37 O13 6.7715 3.3515 4.4780 O.3 1 LGD -0.4053
38 C25 5.7119 4.0411 3.7748 C.3 1 LGD 0.1268
39 O14 -6.4322 -3.7610 -7.5901 O.3 1 LGD -0.5699
40 C26 -4.2603 -6.0845 -6.9165 C.3 1 LGD 0.1742
41 O15 -0.3474 -3.8754 -4.0765 O.3 1 LGD -0.6381
42 C27 0.3351 1.8081 -1.6936 C.3 1 LGD 0.1616
43 O16 4.4213 0.8468 3.0669 O.3 1 LGD -0.5583
44 C28 6.2980 5.2716 3.0344 C.3 1 LGD 0.1606
45 O17 -7.9135 -6.7277 -6.0321 O.3 1 LGD -0.6463
46 N1 -7.8813 -4.2895 -4.2291 N.pl3 1 LGD -0.8796
47 C29 -4.5756 -0.6750 -3.2167 C.2 1 LGD 0.9207
48 N2 -2.0490 -1.3020 1.0988 N.pl3 1 LGD -0.8749
49 O18 8.4652 3.2858 6.1009 O.3 1 LGD -0.3758
50 N3 5.9141 2.9892 7.2824 N.pl3 1 LGD -0.8733
51 C30 0.5378 3.6428 2.5205 C.2 1 LGD 0.9170
52 C31 9.5936 3.1730 5.2193 C.3 1 LGD 0.1368
53 S1 -8.6583 -3.2012 -3.1353 S.O2 1 LGD 1.4223
54 O19 -8.4345 -1.9005 -3.7416 O.co2 1 LGD -0.7102
55 O20 -7.8923 -3.5082 -1.9410 O.co2 1 LGD -0.7102
56 O21 -9.9981 -3.7607 -3.1718 O.co2 1 LGD -0.7102
57 O22 -3.0885 -6.4399 -6.1614 O.3 1 LGD -0.5693
58 S2 -1.6273 -6.2049 -6.8340 S.O2 1 LGD 1.5392
59 O23 -1.6641 -4.8400 -7.3312 O.co2 1 LGD -0.7290
60 O24 -1.5539 -7.2132 -7.8781 O.co2 1 LGD -0.7290
61 O25 -0.7027 -6.4147 -5.7333 O.co2 1 LGD -0.7290
62 O26 5.2938 5.7971 2.1499 O.3 1 LGD -0.5149
63 S3 5.6634 7.1297 1.2907 S.O2 1 LGD 1.5504
64 O27 5.7857 8.1748 2.2935 O.co2 1 LGD -0.7530
65 O28 4.5358 7.2985 0.3914 O.co2 1 LGD -0.7530
66 O29 6.9147 6.8041 0.6260 O.co2 1 LGD -0.7530
67 S4 5.6191 -0.2076 3.3892 S.O2 1 LGD 1.5492
68 O30 1.7268 1.9474 -1.3507 O.3 1 LGD -0.5812
69 S5 2.4617 3.3667 -1.6527 S.O2 1 LGD 1.5409
70 O31 2.4842 3.4506 -3.1039 O.co2 1 LGD -0.7386
71 O32 3.7729 3.2161 -1.0453 O.co2 1 LGD -0.7386
72 O33 1.6141 4.3620 -1.0198 O.co2 1 LGD -0.7386
73 O34 6.1677 0.2436 4.6574 O.co2 1 LGD -0.7529
74 O35 6.5252 -0.0625 2.2631 O.co2 1 LGD -0.7529
75 O36 4.9557 -1.4985 3.4596 O.co2 1 LGD -0.7529
76 S6 -4.1329 2.6207 -0.0913 S.O2 1 LGD 1.5525
77 O37 -4.8791 2.8814 -1.3097 O.co2 1 LGD -0.7439
78 O38 -3.6772 3.8251 0.5796 O.co2 1 LGD -0.7439
79 O39 -4.7608 1.6501 0.7901 O.co2 1 LGD -0.7439
80 O40 -0.5735 3.7985 2.0469 O.co2 1 LGD -0.8077
81 O41 1.4574 4.4370 2.4154 O.co2 1 LGD -0.8077
82 O42 -5.3563 -0.9460 -2.3210 O.co2 1 LGD -0.7906
83 O43 -4.2971 0.4537 -3.5833 O.co2 1 LGD -0.7906
84 S7 -2.5358 -2.0358 2.5841 S.O2 1 LGD 1.4358
85 S8 6.0308 2.6933 8.9731 S.O2 1 LGD 1.4378
86 O44 -1.2300 -2.4518 3.0634 O.co2 1 LGD -0.7482
87 O45 -3.3576 -3.1070 2.0495 O.co2 1 LGD -0.7482
88 O46 -3.1895 -0.9580 3.3058 O.co2 1 LGD -0.7482
89 O47 5.2410 1.4790 9.0685 O.co2 1 LGD -0.7550
90 O48 5.4800 3.9240 9.5139 O.co2 1 LGD -0.7550
91 O49 7.4717 2.5546 9.0897 O.co2 1 LGD -0.7550
92 H1 -6.8639 -6.2867 -7.7439 H 1 LGD -0.0007
93 H2 -8.2384 -4.3056 -6.7867 H 1 LGD 0.0183
94 H3 -6.8206 -2.7827 -5.2721 H 1 LGD 0.1326
95 H4 -4.6767 -3.9488 -5.4261 H 1 LGD 0.0555
96 H5 -5.5157 -7.4942 -5.9130 H 1 LGD 0.0313
97 H6 -3.8414 -2.9957 -2.0628 H 1 LGD 0.1716
98 H7 -2.7124 -4.2756 -4.5809 H 1 LGD 0.0136
99 H8 -3.5783 -5.8134 -3.1875 H 1 LGD 0.3992
100 H9 -4.3358 -1.9578 -4.8742 H 1 LGD 0.0024
101 H10 -0.4664 -1.4444 -3.5090 H 1 LGD 0.0715
102 H11 -1.0433 -3.6966 -2.1363 H 1 LGD 0.0776
103 H12 -3.5226 -0.0159 -0.6540 H 1 LGD 0.1070
104 H13 -1.9086 0.6107 -2.5870 H 1 LGD 0.0787
105 H14 -2.5765 0.6776 1.6486 H 1 LGD 0.1070
106 H15 -0.4933 1.7440 0.8224 H 1 LGD 0.1009
107 H16 0.5057 -0.2868 -2.0764 H 1 LGD 0.0302
108 H17 1.7627 1.4080 1.7667 H 1 LGD 0.0969
109 H18 2.4393 -0.6509 2.9316 H 1 LGD 0.1083
110 H19 0.8993 0.4975 5.0317 H 1 LGD 0.3959
111 H20 -0.2349 2.2043 3.9007 H 1 LGD 0.0607
112 H21 3.2484 2.9906 3.1549 H 1 LGD 0.1201
113 H22 3.6678 0.6226 5.0114 H 1 LGD 0.0512
114 H23 4.5912 6.7770 5.4403 H 1 LGD 0.4122
115 H24 4.2419 4.9376 6.8528 H 1 LGD 0.0537
116 H25 3.8075 5.0084 4.3130 H 1 LGD 0.0958
117 H26 6.7447 4.9083 7.4699 H 1 LGD 0.0199
118 H27 7.7584 5.0379 5.2362 H 1 LGD -0.0070
119 H28 5.3339 3.3707 2.9941 H 1 LGD 0.1625
120 H29 -6.8380 -3.9715 -8.4490 H 1 LGD 0.3424
121 H30 -4.3019 -6.6690 -7.8442 H 1 LGD 0.0289
122 H31 -4.2328 -5.0217 -7.1810 H 1 LGD 0.0289
123 H32 -0.6562 -4.7275 -4.4397 H 1 LGD 0.4202
124 H33 0.1877 2.0236 -2.7593 H 1 LGD 0.0485
125 H34 -0.2726 2.5136 -1.1145 H 1 LGD 0.0485
126 H35 6.6169 6.0447 3.7418 H 1 LGD 0.0107
127 H36 7.1740 4.9542 2.4548 H 1 LGD 0.0107
128 H37 -7.5874 -6.9400 -5.1396 H 1 LGD 0.4334
129 H38 -8.1849 -5.2489 -4.2221 H 1 LGD 0.3683
130 H39 -1.7397 -1.9109 0.3575 H 1 LGD 0.4128
131 H40 5.5648 2.2518 6.6892 H 1 LGD 0.4853
132 H41 10.3889 2.5950 5.7057 H 1 LGD -0.0007
133 H42 9.3073 2.6599 4.2925 H 1 LGD -0.0007
134 H43 9.9844 4.1677 4.9706 H 1 LGD -0.0007
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1