@COMMENT
LIGANDBOX_ID = D01844-17
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-17
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0355 -0.5995 -9.9643 C.3 1 LGD 0.0927
2 C2 1.5602 -1.8205 -9.1385 C.3 1 LGD 0.0891
3 C3 1.7912 -1.4691 -7.6387 C.3 1 LGD 0.2462
4 C4 0.5579 -0.7266 -7.0676 C.3 1 LGD 0.3081
5 O1 0.3182 0.4571 -7.8603 O.3 1 LGD -0.4342
6 C5 -0.0835 0.2092 -9.2318 C.3 1 LGD 0.1402
7 O2 0.8305 -0.3293 -5.7065 O.3 1 LGD -0.3501
8 C6 -0.1831 -0.5841 -4.6991 C.3 1 LGD 0.0973
9 C7 -1.5157 0.1207 -5.0581 C.3 1 LGD 0.0841
10 O3 -1.3154 1.5126 -5.2970 O.3 1 LGD -0.6067
11 C8 -0.3859 -2.1281 -4.4992 C.3 1 LGD -0.0043
12 O4 -1.7570 -2.3990 -4.0724 O.3 1 LGD -0.4636
13 C9 -2.3876 -1.4422 -3.1807 C.3 1 LGD 0.3399
14 C10 -2.5819 -0.0935 -3.9424 C.3 1 LGD 0.1324
15 O5 -0.0732 -3.4220 0.4739 O.3 1 LGD -0.6285
16 C11 -0.2623 -2.1399 -0.1717 C.3 1 LGD 0.2119
17 C12 -1.5700 -2.2625 -1.0170 C.3 1 LGD 0.1267
18 O6 -1.5544 -1.2193 -2.0195 O.3 1 LGD -0.3929
19 C13 -0.3530 -1.0077 0.8965 C.3 1 LGD 0.2381
20 C14 -1.6526 -1.1845 1.7159 C.3 1 LGD 0.3151
21 O7 -2.7687 -1.0864 0.8050 O.3 1 LGD -0.4306
22 C15 -2.8839 -2.1602 -0.1630 C.3 1 LGD 0.1456
23 O8 -1.7430 -0.1296 2.6914 O.3 1 LGD -0.3231
24 C16 -2.6324 -0.3424 3.8149 C.3 1 LGD 0.1127
25 C17 -1.9034 -1.1561 4.9332 C.3 1 LGD 0.1309
26 O9 -1.6020 -2.4988 4.5527 O.3 1 LGD -0.6267
27 C18 -3.0556 1.0618 4.3811 C.3 1 LGD 0.0262
28 O10 -2.1720 1.4557 5.4762 O.3 1 LGD -0.5024
29 C19 -0.7823 1.1263 5.2806 C.3 1 LGD 0.3216
30 C20 -0.6356 -0.4098 5.4565 C.3 1 LGD 0.1675
31 O11 1.2821 5.1596 6.9799 O.3 1 LGD -0.6759
32 C21 1.0270 3.7740 7.2253 C.3 1 LGD 0.1169
33 C22 0.5789 3.0685 5.9070 C.3 1 LGD 0.1144
34 O12 0.0161 1.7900 6.2779 O.3 1 LGD -0.4068
35 C23 2.2983 3.1138 7.8465 C.3 1 LGD 0.2903
36 C24 3.4068 2.9203 6.7693 C.3 1 LGD 0.3269
37 O13 2.8552 2.1852 5.6523 O.3 1 LGD -0.3933
38 C25 1.7765 2.8190 4.9244 C.3 1 LGD 0.1242
39 O14 0.6405 -2.9082 -9.2382 O.3 1 LGD -0.5714
40 C26 -1.4900 -0.4460 -9.2732 C.3 1 LGD 0.1703
41 O15 -3.8789 -0.0563 -4.5414 O.3 1 LGD -0.6427
42 C27 -3.2606 -3.4871 0.5516 C.3 1 LGD 0.1528
43 O16 0.5235 -0.8161 4.6948 O.3 1 LGD -0.5263
44 C28 2.3123 4.0814 4.1949 C.3 1 LGD 0.1639
45 O17 2.1256 0.2753 -10.2529 O.3 1 LGD -0.6625
46 N1 2.9982 -0.6393 -7.4841 N.pl3 1 LGD -0.8831
47 C29 0.6539 -2.7995 -3.5721 C.2 1 LGD 0.9198
48 N2 -0.3377 0.3031 0.2273 N.pl3 1 LGD -0.8733
49 O18 4.4920 2.1580 7.3333 O.3 1 LGD -0.3851
50 N3 1.9538 1.8303 8.4746 N.pl3 1 LGD -0.8769
51 C30 -3.1751 2.1608 3.3004 C.2 1 LGD 0.9453
52 C31 5.6436 2.0419 6.4816 C.3 1 LGD 0.1343
53 S1 4.4871 -1.2896 -6.9018 S.O2 1 LGD 1.4133
54 O19 4.3456 -2.7166 -7.1470 O.co2 1 LGD -0.7183
55 O20 4.3935 -0.8381 -5.5262 O.co2 1 LGD -0.7183
56 O21 5.4066 -0.5385 -7.7356 O.co2 1 LGD -0.7183
57 O22 -2.3873 0.3799 -8.5101 O.3 1 LGD -0.5660
58 S2 -3.9356 -0.0903 -8.3550 S.O2 1 LGD 1.5389
59 O23 -3.8575 -1.4590 -7.8732 O.co2 1 LGD -0.7315
60 O24 -4.4802 0.0345 -9.6967 O.co2 1 LGD -0.7315
61 O25 -4.4871 0.8502 -7.3949 O.co2 1 LGD -0.7315
62 O26 1.2223 4.7231 3.5112 O.3 1 LGD -0.5129
63 S3 1.5062 6.1708 2.8245 S.O2 1 LGD 1.5520
64 O27 1.7412 7.0549 3.9542 O.co2 1 LGD -0.7609
65 O28 0.2885 6.4618 2.0881 O.co2 1 LGD -0.7609
66 O29 2.6770 5.9607 1.9890 O.co2 1 LGD -0.7609
67 S4 1.8108 -1.4291 5.4849 S.O2 1 LGD 1.5518
68 O30 -4.4708 -3.2761 1.3032 O.3 1 LGD -0.5662
69 S5 -5.1126 -4.5412 2.1000 S.O2 1 LGD 1.5527
70 O31 -5.4725 -5.4798 1.0500 O.co2 1 LGD -0.7658
71 O32 -6.2494 -3.9728 2.8041 O.co2 1 LGD -0.7658
72 O33 -4.0453 -5.0092 2.9679 O.co2 1 LGD -0.7658
73 O34 2.0110 -0.5493 6.6242 O.co2 1 LGD -0.7411
74 O35 2.8811 -1.3847 4.5041 O.co2 1 LGD -0.7411
75 O36 1.3911 -2.7705 5.8527 O.co2 1 LGD -0.7411
76 S6 1.2713 -3.7658 1.3276 S.O2 1 LGD 1.5526
77 O37 1.4697 -5.1874 1.1026 O.co2 1 LGD -0.7345
78 O38 0.9000 -3.4337 2.6915 O.co2 1 LGD -0.7345
79 O39 2.3117 -2.9207 0.7667 O.co2 1 LGD -0.7345
80 O40 -4.0885 2.0434 2.4999 O.co2 1 LGD -0.8353
81 O41 -2.4051 3.1059 3.3502 O.co2 1 LGD -0.8353
82 O42 1.6847 -2.1927 -3.3391 O.co2 1 LGD -0.7954
83 O43 0.3597 -3.8827 -3.0961 O.co2 1 LGD -0.7954
84 S7 0.8800 1.4785 0.5398 S.O2 1 LGD 1.4324
85 S8 1.8506 1.6580 10.1823 S.O2 1 LGD 1.4342
86 O44 0.4837 1.8700 1.8796 O.co2 1 LGD -0.7281
87 O45 0.6001 2.4143 -0.5347 O.co2 1 LGD -0.7281
88 O46 2.0807 0.6660 0.4582 O.co2 1 LGD -0.7281
89 O47 1.3406 0.3019 10.2744 O.co2 1 LGD -0.7652
90 O48 0.9572 2.7552 10.5113 O.co2 1 LGD -0.7652
91 O49 3.2441 1.8724 10.5319 O.co2 1 LGD -0.7652
92 H1 0.6292 -0.9689 -10.9147 H 1 LGD 0.0010
93 H2 2.5167 -2.1460 -9.5680 H 1 LGD 0.0270
94 H3 1.9113 -2.4010 -7.0716 H 1 LGD 0.1256
95 H4 -0.3176 -1.3830 -7.1010 H 1 LGD 0.0615
96 H5 -0.1772 1.1766 -9.7415 H 1 LGD 0.0416
97 H6 0.1666 -0.1601 -3.7483 H 1 LGD 0.1799
98 H7 -1.8983 -0.3463 -5.9738 H 1 LGD 0.0111
99 H8 -0.7118 1.5783 -6.0592 H 1 LGD 0.3984
100 H9 -0.2544 -2.6287 -5.4650 H 1 LGD 0.0001
101 H10 -3.3658 -1.8224 -2.8672 H 1 LGD 0.0603
102 H11 -2.4967 0.7225 -3.2129 H 1 LGD 0.0973
103 H12 0.5831 -1.9420 -0.8432 H 1 LGD 0.1256
104 H13 -1.5579 -3.2369 -1.5211 H 1 LGD 0.0655
105 H14 0.5032 -1.0684 1.5794 H 1 LGD 0.1228
106 H15 -1.6490 -2.1591 2.2095 H 1 LGD 0.0549
107 H16 -3.7178 -1.9241 -0.8338 H 1 LGD 0.0259
108 H17 -3.5331 -0.8753 3.4829 H 1 LGD 0.0463
109 H18 -2.6061 -1.2007 5.7749 H 1 LGD -0.0068
110 H19 -0.6747 -2.5094 4.2468 H 1 LGD 0.4789
111 H20 -4.0627 0.9490 4.8025 H 1 LGD -0.0105
112 H21 -0.4739 1.4241 4.2716 H 1 LGD 0.1589
113 H22 -0.5095 -0.6516 6.5197 H 1 LGD 0.0281
114 H23 0.9162 5.3767 6.1033 H 1 LGD 0.4312
115 H24 0.2054 3.7014 7.9494 H 1 LGD 0.0572
116 H25 -0.1956 3.6731 5.4166 H 1 LGD 0.0898
117 H26 2.6909 3.7848 8.6212 H 1 LGD 0.0032
118 H27 3.7848 3.8933 6.4374 H 1 LGD -0.0141
119 H28 1.4502 2.1266 4.1420 H 1 LGD 0.1969
120 H29 0.6066 -3.1713 -10.1743 H 1 LGD 0.3424
121 H30 -1.8325 -0.5120 -10.3135 H 1 LGD 0.0254
122 H31 -1.4604 -1.4591 -8.8571 H 1 LGD 0.0254
123 H32 -3.7853 0.3571 -5.4208 H 1 LGD 0.4189
124 H33 -3.4200 -4.2675 -0.2030 H 1 LGD 0.0491
125 H34 -2.4549 -3.8170 1.2174 H 1 LGD 0.0491
126 H35 2.7627 4.7822 4.9060 H 1 LGD 0.0128
127 H36 3.0831 3.7827 3.4734 H 1 LGD 0.0128
128 H37 2.5847 0.4344 -9.4086 H 1 LGD 0.4598
129 H38 2.8917 0.3620 -7.4429 H 1 LGD 0.4084
130 H39 -1.0963 0.5545 -0.3867 H 1 LGD 0.4035
131 H40 1.8345 1.0068 7.8976 H 1 LGD 0.5180
132 H41 6.4317 1.4787 6.9962 H 1 LGD 0.0022
133 H42 5.3860 1.5118 5.5559 H 1 LGD 0.0022
134 H43 6.0318 3.0362 6.2270 H 1 LGD 0.0022
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1