@COMMENT
LIGANDBOX_ID = D01844-18
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-18
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0806 -0.6989 -10.0376 C.3 1 LGD 0.0877
2 C2 1.5881 -1.9270 -9.2094 C.3 1 LGD 0.0950
3 C3 1.8335 -1.5806 -7.7103 C.3 1 LGD 0.2567
4 C4 0.6187 -0.8017 -7.1376 C.3 1 LGD 0.3084
5 O1 0.3890 0.3769 -7.9423 O.3 1 LGD -0.4312
6 C5 -0.0275 0.1229 -9.3072 C.3 1 LGD 0.1324
7 O2 0.8951 -0.3899 -5.7815 O.3 1 LGD -0.3325
8 C6 -0.1177 -0.6301 -4.7681 C.3 1 LGD 0.0952
9 C7 -1.4608 0.0490 -5.1439 C.3 1 LGD 0.0835
10 O3 -1.2798 1.4386 -5.4096 O.3 1 LGD -0.6079
11 C8 -0.2995 -2.1703 -4.5294 C.3 1 LGD -0.0054
12 O4 -1.6671 -2.4507 -4.0983 O.3 1 LGD -0.4658
13 C9 -2.3164 -1.4821 -3.2326 C.3 1 LGD 0.3432
14 C10 -2.5304 -0.1576 -4.0294 C.3 1 LGD 0.1331
15 O5 0.1031 -3.3047 0.4348 O.3 1 LGD -0.6188
16 C11 -0.1834 -2.0371 -0.1988 C.3 1 LGD 0.2114
17 C12 -1.4752 -2.2407 -1.0524 C.3 1 LGD 0.1251
18 O6 -1.4940 -1.2139 -2.0721 O.3 1 LGD -0.3975
19 C13 -0.3313 -0.9235 0.8868 C.3 1 LGD 0.2348
20 C14 -1.6679 -1.0970 1.6532 C.3 1 LGD 0.3098
21 O7 -2.7492 -1.0683 0.6994 O.3 1 LGD -0.4227
22 C15 -2.7999 -2.1857 -0.2178 C.3 1 LGD 0.1425
23 O8 -1.8453 -0.0096 2.5799 O.3 1 LGD -0.3386
24 C16 -2.7062 -0.2771 3.7121 C.3 1 LGD 0.1225
25 C17 -1.9031 -1.1298 4.7413 C.3 1 LGD 0.1049
26 O9 -2.7540 -1.4462 5.8474 O.3 1 LGD -0.6485
27 C18 -3.1528 1.0950 4.3439 C.3 1 LGD 0.0339
28 O10 -2.2425 1.4809 5.4186 O.3 1 LGD -0.4801
29 C19 -0.8547 1.2086 5.1515 C.3 1 LGD 0.3321
30 C20 -0.6418 -0.3352 5.2235 C.3 1 LGD 0.1584
31 O11 1.3633 5.1800 6.8046 O.3 1 LGD -0.6651
32 C21 1.0538 3.8087 7.0631 C.3 1 LGD 0.1192
33 C22 0.5785 3.1084 5.7508 C.3 1 LGD 0.1072
34 O12 -0.0351 1.8613 6.1407 O.3 1 LGD -0.3945
35 C23 2.2969 3.1048 7.6927 C.3 1 LGD 0.2962
36 C24 3.3903 2.8391 6.6166 C.3 1 LGD 0.3248
37 O13 2.8038 2.1062 5.5150 O.3 1 LGD -0.3946
38 C25 1.7628 2.7879 4.7733 C.3 1 LGD 0.1305
39 O14 0.6507 -3.0000 -9.3044 O.3 1 LGD -0.5739
40 C26 -1.4401 -0.5192 -9.3364 C.3 1 LGD 0.1734
41 O15 -3.8240 -0.1609 -4.6371 O.3 1 LGD -0.6437
42 C27 -3.1049 -3.4974 0.5572 C.3 1 LGD 0.1530
43 O16 -0.3253 -0.7253 6.5828 O.3 1 LGD -0.5987
44 C28 2.3650 4.0134 4.0326 C.3 1 LGD 0.1603
45 O17 2.1772 0.1681 -10.3274 O.3 1 LGD -0.6438
46 N1 3.0781 -0.8012 -7.5827 N.pl3 1 LGD -0.8753
47 C29 0.7448 -2.8042 -3.5808 C.2 1 LGD 0.9216
48 N2 -0.2581 0.3982 0.2414 N.pl3 1 LGD -0.8737
49 O18 4.4464 2.0471 7.1929 O.3 1 LGD -0.3729
50 N3 1.8964 1.8572 8.3605 N.pl3 1 LGD -0.8684
51 C30 -3.3556 2.2286 3.3113 C.2 1 LGD 0.9439
52 C31 5.6136 1.9238 6.3650 C.3 1 LGD 0.1366
53 S1 4.3792 -1.2516 -6.5397 S.O2 1 LGD 1.4210
54 O19 4.1482 -2.6657 -6.3011 O.co2 1 LGD -0.7110
55 O20 4.0980 -0.3449 -5.4417 O.co2 1 LGD -0.7110
56 O21 5.4939 -0.8667 -7.3875 O.co2 1 LGD -0.7110
57 O22 -2.3281 0.3244 -8.5823 O.3 1 LGD -0.5651
58 S2 -3.8866 -0.1162 -8.4431 S.O2 1 LGD 1.5396
59 O23 -3.8406 -1.4981 -7.9961 O.co2 1 LGD -0.7310
60 O24 -4.4232 0.0547 -9.7829 O.co2 1 LGD -0.7310
61 O25 -4.4213 0.8117 -7.4615 O.co2 1 LGD -0.7310
62 O26 1.3241 4.6552 3.2770 O.3 1 LGD -0.5147
63 S3 1.6876 6.0406 2.5048 S.O2 1 LGD 1.5524
64 O27 1.9196 6.9923 3.5788 O.co2 1 LGD -0.7596
65 O28 0.5077 6.3244 1.7067 O.co2 1 LGD -0.7596
66 O29 2.8765 5.7303 1.7279 O.co2 1 LGD -0.7596
67 S4 0.8975 -1.7644 6.8492 S.O2 1 LGD 1.5306
68 O30 -4.2723 -3.2852 1.3735 O.3 1 LGD -0.5749
69 S5 -4.6802 -4.4383 2.4453 S.O2 1 LGD 1.5479
70 O31 -4.7806 -5.6528 1.6527 O.co2 1 LGD -0.7571
71 O32 -5.9448 -3.9775 2.9926 O.co2 1 LGD -0.7571
72 O33 -3.5837 -4.4437 3.3987 O.co2 1 LGD -0.7571
73 O34 0.7449 -2.7910 5.8325 O.co2 1 LGD -0.7335
74 O35 0.6694 -2.2327 8.2050 O.co2 1 LGD -0.7335
75 O36 2.0864 -0.9436 6.6943 O.co2 1 LGD -0.7335
76 S6 1.5481 -3.6055 1.1282 S.O2 1 LGD 1.5407
77 O37 1.8496 -4.9670 0.7205 O.co2 1 LGD -0.7320
78 O38 1.2785 -3.4641 2.5478 O.co2 1 LGD -0.7320
79 O39 2.4590 -2.6070 0.5942 O.co2 1 LGD -0.7320
80 O40 -4.2219 2.0558 2.4699 O.co2 1 LGD -0.8430
81 O41 -2.6855 3.2415 3.4281 O.co2 1 LGD -0.8430
82 O42 1.7465 -2.1604 -3.3218 O.co2 1 LGD -0.7942
83 O43 0.4796 -3.8991 -3.1143 O.co2 1 LGD -0.7942
84 S7 0.8029 1.6487 0.7837 S.O2 1 LGD 1.4246
85 S8 1.8901 1.7174 10.0755 S.O2 1 LGD 1.4281
86 O44 -0.0712 2.2691 1.7608 O.co2 1 LGD -0.7233
87 O45 0.9734 2.3705 -0.4645 O.co2 1 LGD -0.7233
88 O46 1.9304 0.9088 1.3231 O.co2 1 LGD -0.7233
89 O47 1.1555 0.4757 10.2325 O.co2 1 LGD -0.7561
90 O48 1.2411 2.9598 10.4580 O.co2 1 LGD -0.7561
91 O49 3.3225 1.6693 10.3113 O.co2 1 LGD -0.7561
92 H1 0.6729 -1.0669 -10.9878 H 1 LGD -0.0033
93 H2 2.5368 -2.2694 -9.6431 H 1 LGD 0.0214
94 H3 1.9201 -2.5200 -7.1517 H 1 LGD 0.1310
95 H4 -0.2672 -1.4448 -7.1584 H 1 LGD 0.0537
96 H5 -0.1159 1.0875 -9.8231 H 1 LGD 0.0345
97 H6 0.2259 -0.1775 -3.8284 H 1 LGD 0.1790
98 H7 -1.8349 -0.4408 -6.0512 H 1 LGD 0.0092
99 H8 -0.6772 1.4977 -6.1731 H 1 LGD 0.4000
100 H9 -0.1578 -2.6909 -5.4834 H 1 LGD 0.0013
101 H10 -3.2900 -1.8704 -2.9150 H 1 LGD 0.0589
102 H11 -2.4664 0.6780 -3.3203 H 1 LGD 0.0932
103 H12 0.6404 -1.7782 -0.8764 H 1 LGD 0.1228
104 H13 -1.4119 -3.2221 -1.5386 H 1 LGD 0.0702
105 H14 0.4848 -1.0205 1.6115 H 1 LGD 0.1094
106 H15 -1.6596 -2.0484 2.1945 H 1 LGD 0.0450
107 H16 -3.6415 -2.0269 -0.9014 H 1 LGD 0.0250
108 H17 -3.5974 -0.8247 3.3779 H 1 LGD 0.0531
109 H18 -1.5693 -2.0644 4.2738 H 1 LGD 0.0984
110 H19 -2.2292 -1.2591 6.6473 H 1 LGD 0.4109
111 H20 -4.1389 0.9340 4.7978 H 1 LGD 0.0028
112 H21 -0.6057 1.5727 4.1481 H 1 LGD 0.1373
113 H22 0.1992 -0.5703 4.5579 H 1 LGD 0.1010
114 H23 0.7396 5.4981 6.1279 H 1 LGD 0.4168
115 H24 0.2296 3.7761 7.7875 H 1 LGD 0.0503
116 H25 -0.1686 3.7384 5.2500 H 1 LGD 0.0881
117 H26 2.7264 3.7777 8.4459 H 1 LGD 0.0083
118 H27 3.8063 3.7893 6.2644 H 1 LGD -0.0127
119 H28 1.4019 2.1087 3.9923 H 1 LGD 0.1719
120 H29 0.6216 -3.2745 -10.2373 H 1 LGD 0.3406
121 H30 -1.7849 -0.5942 -10.3753 H 1 LGD 0.0272
122 H31 -1.4199 -1.5273 -8.9079 H 1 LGD 0.0272
123 H32 -3.7429 0.2778 -5.5055 H 1 LGD 0.4200
124 H33 -3.2876 -4.3104 -0.1565 H 1 LGD 0.0467
125 H34 -2.2527 -3.7823 1.1849 H 1 LGD 0.0467
126 H35 2.7997 4.7274 4.7403 H 1 LGD 0.0161
127 H36 3.1600 3.6709 3.3584 H 1 LGD 0.0161
128 H37 2.1679 0.8662 -9.6492 H 1 LGD 0.4354
129 H38 3.1788 0.0506 -8.1086 H 1 LGD 0.3754
130 H39 -0.8949 0.6141 -0.5093 H 1 LGD 0.4053
131 H40 1.6739 1.0393 7.8098 H 1 LGD 0.4986
132 H41 6.3780 1.3335 6.8851 H 1 LGD -0.0005
133 H42 5.3651 1.4198 5.4224 H 1 LGD -0.0005
134 H43 6.0283 2.9148 6.1410 H 1 LGD -0.0005
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1