@COMMENT
LIGANDBOX_ID = D01844-19
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-19
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.6600 -1.0260 -9.2905 C.3 1 LGD 0.0885
2 C2 2.1662 -2.2726 -8.4887 C.3 1 LGD 0.0942
3 C3 2.4000 -1.9607 -6.9807 C.3 1 LGD 0.2568
4 C4 1.1692 -1.2145 -6.4009 C.3 1 LGD 0.3050
5 O1 0.9458 -0.0103 -7.1689 O.3 1 LGD -0.4263
6 C5 0.5467 -0.2217 -8.5467 C.3 1 LGD 0.1333
7 O2 1.4212 -0.8528 -5.0266 O.3 1 LGD -0.3214
8 C6 0.3881 -1.1198 -4.0399 C.3 1 LGD 0.0896
9 C7 -0.9393 -0.4074 -4.4118 C.3 1 LGD 0.0884
10 O3 -0.7358 0.9878 -4.6268 O.3 1 LGD -0.6005
11 C8 0.1741 -2.6655 -3.8632 C.3 1 LGD 0.0026
12 O4 -1.1912 -2.9349 -3.4143 O.3 1 LGD -0.4779
13 C9 -1.8216 -1.9654 -2.5358 C.3 1 LGD 0.3438
14 C10 -2.0342 -0.6378 -3.3260 C.3 1 LGD 0.1301
15 O5 0.5587 -3.7142 1.2221 O.3 1 LGD -0.6267
16 C11 0.3287 -2.4850 0.4962 C.3 1 LGD 0.2028
17 C12 -0.9716 -2.6991 -0.3437 C.3 1 LGD 0.1328
18 O6 -0.9803 -1.7016 -1.3898 O.3 1 LGD -0.3597
19 C13 0.2131 -1.3033 1.5204 C.3 1 LGD 0.2536
20 C14 -1.1109 -1.4694 2.3140 C.3 1 LGD 0.3174
21 O7 -2.2103 -1.4558 1.3815 O.3 1 LGD -0.3984
22 C15 -2.2901 -2.5974 0.4982 C.3 1 LGD 0.1419
23 O8 -1.3086 -0.4029 3.2641 O.3 1 LGD -0.3095
24 C16 -2.0206 -0.8242 4.4554 C.3 1 LGD 0.1131
25 C17 -0.9985 -1.4714 5.4327 C.3 1 LGD 0.0967
26 O9 -1.7051 -1.9743 6.5696 O.3 1 LGD -0.6365
27 C18 -2.7536 0.3905 5.1265 C.3 1 LGD 0.0154
28 O10 -1.9458 0.9645 6.2015 O.3 1 LGD -0.4912
29 C19 -0.5164 1.0279 5.9995 C.3 1 LGD 0.3527
30 C20 0.0601 -0.4250 5.9056 C.3 1 LGD 0.1588
31 O11 2.5554 3.6627 3.3976 O.3 1 LGD -0.6700
32 C21 1.2334 3.1238 3.4214 C.3 1 LGD 0.1384
33 C22 0.8432 2.7536 4.8861 C.3 1 LGD 0.1338
34 O12 -0.2416 1.8053 4.8105 O.3 1 LGD -0.3219
35 C23 0.2506 4.1382 2.7584 C.3 1 LGD 0.2824
36 C24 -0.0388 5.3226 3.7239 C.3 1 LGD 0.2993
37 O13 -0.5482 4.7855 4.9648 O.3 1 LGD -0.4397
38 C25 0.3770 3.9849 5.7363 C.3 1 LGD 0.1376
39 O14 1.2322 -3.3455 -8.6147 O.3 1 LGD -0.5713
40 C26 -0.8675 -0.8565 -8.6142 C.3 1 LGD 0.1756
41 O15 -3.3118 -0.6536 -3.9674 O.3 1 LGD -0.6503
42 C27 -2.6180 -3.8801 1.3144 C.3 1 LGD 0.1470
43 O16 1.1790 -0.4356 4.9922 O.3 1 LGD -0.5153
44 C28 1.5268 4.8818 6.2632 C.3 1 LGD 0.1496
45 O17 2.7563 -0.1513 -9.5578 O.3 1 LGD -0.6487
46 N1 3.6295 -1.1613 -6.8294 N.pl3 1 LGD -0.8732
47 C29 1.2242 -3.3667 -2.9696 C.2 1 LGD 0.9181
48 N2 0.2681 0.0073 0.8440 N.pl3 1 LGD -0.8877
49 O18 -1.0373 6.1857 3.1455 O.3 1 LGD -0.3406
50 N3 -1.0027 3.4652 2.3772 N.pl3 1 LGD -0.8534
51 C30 -3.3036 1.4502 4.1454 C.2 1 LGD 0.9435
52 C31 -1.2770 7.3984 3.8770 C.3 1 LGD 0.1419
53 S1 4.9385 -1.6115 -5.7965 S.O2 1 LGD 1.4178
54 O19 4.7306 -3.0335 -5.5852 O.co2 1 LGD -0.7109
55 O20 4.6469 -0.7284 -4.6822 O.co2 1 LGD -0.7109
56 O21 6.0456 -1.1936 -6.6387 O.co2 1 LGD -0.7109
57 O22 -1.7645 -0.0256 -7.8568 O.3 1 LGD -0.5575
58 S2 -3.3318 -0.4488 -7.7716 S.O2 1 LGD 1.5402
59 O23 -3.3158 -1.8501 -7.3871 O.co2 1 LGD -0.7330
60 O24 -3.8350 -0.2101 -9.1140 O.co2 1 LGD -0.7330
61 O25 -3.8764 0.4424 -6.7619 O.co2 1 LGD -0.7330
62 O26 2.2664 4.1379 7.2473 O.3 1 LGD -0.5516
63 S3 3.5646 4.8485 7.9249 S.O2 1 LGD 1.5567
64 O27 4.5001 5.0129 6.8252 O.co2 1 LGD -0.7651
65 O28 3.9948 3.9002 8.9379 O.co2 1 LGD -0.7651
66 O29 3.0570 6.1015 8.4593 O.co2 1 LGD -0.7651
67 S4 2.5085 -1.2747 5.4148 S.O2 1 LGD 1.5168
68 O30 -3.7660 -3.6166 2.1440 O.3 1 LGD -0.5651
69 S5 -4.1557 -4.7066 3.2867 S.O2 1 LGD 1.5484
70 O31 -4.2636 -5.9658 2.5684 O.co2 1 LGD -0.7654
71 O32 -5.4136 -4.2180 3.8253 O.co2 1 LGD -0.7654
72 O33 -3.0465 -4.6542 4.2240 O.co2 1 LGD -0.7654
73 O34 3.0086 -0.5717 6.5848 O.co2 1 LGD -0.7310
74 O35 3.3743 -1.1829 4.2536 O.co2 1 LGD -0.7310
75 O36 2.0236 -2.6143 5.7009 O.co2 1 LGD -0.7310
76 S6 2.0596 -4.1915 1.6445 S.O2 1 LGD 1.5421
77 O37 2.3450 -5.2799 0.7256 O.co2 1 LGD -0.7370
78 O38 1.9051 -4.6214 3.0230 O.co2 1 LGD -0.7370
79 O39 2.9136 -3.0297 1.4693 O.co2 1 LGD -0.7370
80 O40 -4.0356 1.0497 3.2568 O.co2 1 LGD -0.8173
81 O41 -3.0163 2.6192 4.3410 O.co2 1 LGD -0.8173
82 O42 2.3093 -2.8291 -2.8382 O.co2 1 LGD -0.7925
83 O43 0.8888 -4.4022 -2.4200 O.co2 1 LGD -0.7925
84 S7 1.7533 0.7075 0.3010 S.O2 1 LGD 1.4093
85 S8 -1.7704 3.6706 0.8436 S.O2 1 LGD 1.4413
86 O44 1.3518 2.0886 0.1099 O.co2 1 LGD -0.7302
87 O45 1.9661 -0.0743 -0.9028 O.co2 1 LGD -0.7302
88 O46 2.6436 0.3999 1.4059 O.co2 1 LGD -0.7302
89 O47 -1.8586 2.2757 0.4495 O.co2 1 LGD -0.7355
90 O48 -0.8648 4.5286 0.0986 O.co2 1 LGD -0.7355
91 O49 -3.0223 4.2530 1.2934 O.co2 1 LGD -0.7355
92 H1 1.2566 -1.3732 -10.2503 H 1 LGD -0.0091
93 H2 3.1190 -2.6020 -8.9233 H 1 LGD 0.0149
94 H3 2.4996 -2.9109 -6.4428 H 1 LGD 0.1332
95 H4 0.2885 -1.8620 -6.4601 H 1 LGD 0.0515
96 H5 0.4681 0.7585 -9.0342 H 1 LGD 0.0305
97 H6 0.7246 -0.7121 -3.0781 H 1 LGD 0.2172
98 H7 -1.3016 -0.8599 -5.3431 H 1 LGD -0.0060
99 H8 -0.0489 1.0642 -5.3133 H 1 LGD 0.3948
100 H9 0.2820 -3.1465 -4.8420 H 1 LGD -0.0170
101 H10 -2.7932 -2.3469 -2.2044 H 1 LGD 0.0482
102 H11 -1.9996 0.1917 -2.6072 H 1 LGD 0.1159
103 H12 1.1619 -2.3151 -0.1964 H 1 LGD 0.1397
104 H13 -0.9258 -3.6947 -0.8017 H 1 LGD 0.0606
105 H14 1.0441 -1.3682 2.2335 H 1 LGD 0.1030
106 H15 -1.0836 -2.4248 2.8489 H 1 LGD 0.0282
107 H16 -3.1334 -2.4414 -0.1839 H 1 LGD 0.0287
108 H17 -2.7831 -1.5650 4.1786 H 1 LGD 0.0619
109 H18 -0.4878 -2.3045 4.9337 H 1 LGD 0.1434
110 H19 -2.2568 -1.2420 6.8977 H 1 LGD 0.3667
111 H20 -3.6505 -0.0244 5.6035 H 1 LGD -0.0131
112 H21 -0.0622 1.5186 6.8670 H 1 LGD 0.0119
113 H22 0.4053 -0.7066 6.9089 H 1 LGD -0.0011
114 H23 3.1239 2.9827 2.9936 H 1 LGD 0.4288
115 H24 1.2308 2.2025 2.8279 H 1 LGD 0.1599
116 H25 1.7048 2.2729 5.3683 H 1 LGD 0.0696
117 H26 0.7442 4.5369 1.8648 H 1 LGD 0.0807
118 H27 0.8761 5.8982 3.9042 H 1 LGD -0.0277
119 H28 -0.1578 3.6177 6.6193 H 1 LGD 0.0604
120 H29 1.2575 -3.6414 -9.5412 H 1 LGD 0.3341
121 H30 -1.1946 -0.9054 -9.6604 H 1 LGD 0.0234
122 H31 -0.8590 -1.8746 -8.2092 H 1 LGD 0.0234
123 H32 -3.2292 -0.1466 -4.7973 H 1 LGD 0.4150
124 H33 -2.8329 -4.7079 0.6272 H 1 LGD 0.0424
125 H34 -1.7650 -4.1711 1.9374 H 1 LGD 0.0424
126 H35 2.1893 5.1898 5.4464 H 1 LGD 0.0198
127 H36 1.0993 5.7824 6.7219 H 1 LGD 0.0198
128 H37 2.7390 0.5366 -8.8694 H 1 LGD 0.4360
129 H38 3.7082 -0.2877 -7.3220 H 1 LGD 0.3726
130 H39 -0.5742 0.5614 0.7559 H 1 LGD 0.4622
131 H40 -1.5349 2.9827 3.0911 H 1 LGD 0.4838
132 H41 -2.0277 8.0048 3.3555 H 1 LGD -0.0232
133 H42 -1.6513 7.1729 4.8837 H 1 LGD -0.0232
134 H43 -0.3518 7.9820 3.9627 H 1 LGD -0.0232
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1