@COMMENT
LIGANDBOX_ID = D01844-20
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-20
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1193 -0.6634 -9.9925 C.3 1 LGD 0.0891
2 C2 1.6057 -1.8925 -9.1528 C.3 1 LGD 0.0954
3 C3 1.8382 -1.5398 -7.6534 C.3 1 LGD 0.2569
4 C4 0.6209 -0.7498 -7.0998 C.3 1 LGD 0.3091
5 O1 0.4119 0.4284 -7.9103 O.3 1 LGD -0.4289
6 C5 0.0101 0.1726 -9.2792 C.3 1 LGD 0.1328
7 O2 0.8780 -0.3380 -5.7404 O.3 1 LGD -0.3299
8 C6 -0.1401 -0.5948 -4.7365 C.3 1 LGD 0.0957
9 C7 -1.4862 0.0767 -5.1145 C.3 1 LGD 0.0829
10 O3 -1.3150 1.4695 -5.3694 O.3 1 LGD -0.6102
11 C8 -0.3136 -2.1381 -4.5119 C.3 1 LGD -0.0082
12 O4 -1.6780 -2.4303 -4.0780 O.3 1 LGD -0.4655
13 C9 -2.3319 -1.4689 -3.2084 C.3 1 LGD 0.3445
14 C10 -2.5603 -0.1467 -4.0065 C.3 1 LGD 0.1331
15 O5 0.1348 -3.2260 0.4839 O.3 1 LGD -0.6159
16 C11 -0.1655 -1.9820 -0.1865 C.3 1 LGD 0.2168
17 C12 -1.4583 -2.2177 -1.0312 C.3 1 LGD 0.1201
18 O6 -1.5052 -1.1919 -2.0523 O.3 1 LGD -0.4034
19 C13 -0.3275 -0.8542 0.8806 C.3 1 LGD 0.2380
20 C14 -1.6476 -1.0639 1.6677 C.3 1 LGD 0.3159
21 O7 -2.7426 -1.0663 0.7278 O.3 1 LGD -0.4442
22 C15 -2.7777 -2.1872 -0.1860 C.3 1 LGD 0.1474
23 O8 -1.8357 0.0269 2.5827 O.3 1 LGD -0.3553
24 C16 -2.7065 -0.2111 3.7090 C.3 1 LGD 0.0959
25 C17 -1.9377 -1.0684 4.7638 C.3 1 LGD 0.1194
26 O9 -2.8144 -1.3473 5.8585 O.3 1 LGD -0.6434
27 C18 -3.0969 1.2005 4.2757 C.3 1 LGD 0.0157
28 O10 -2.2340 1.5437 5.4006 O.3 1 LGD -0.4778
29 C19 -0.8472 1.2313 5.1845 C.3 1 LGD 0.3082
30 C20 -0.6809 -0.3062 5.2871 C.3 1 LGD 0.1702
31 O11 1.4285 5.1069 6.9752 O.3 1 LGD -0.6552
32 C21 1.1060 3.7309 7.1882 C.3 1 LGD 0.1171
33 C22 0.6154 3.0819 5.8540 C.3 1 LGD 0.1144
34 O12 -0.0411 1.8454 6.2062 O.3 1 LGD -0.4039
35 C23 2.3464 2.9948 7.7831 C.3 1 LGD 0.2991
36 C24 3.4343 2.7885 6.6916 C.3 1 LGD 0.3230
37 O13 2.8455 2.0753 5.5813 O.3 1 LGD -0.3768
38 C25 1.7916 2.7594 4.8632 C.3 1 LGD 0.1292
39 O14 0.6600 -2.9578 -9.2520 O.3 1 LGD -0.5721
40 C26 -1.4086 -0.4548 -9.3226 C.3 1 LGD 0.1736
41 O15 -3.8494 -0.1680 -4.6235 O.3 1 LGD -0.6466
42 C27 -3.0520 -3.5002 0.5980 C.3 1 LGD 0.1534
43 O16 0.4530 -0.6481 4.4644 O.3 1 LGD -0.5398
44 C28 2.3777 3.9877 4.1201 C.3 1 LGD 0.1599
45 O17 2.2275 0.1924 -10.2717 O.3 1 LGD -0.6456
46 N1 3.0882 -0.7692 -7.5222 N.pl3 1 LGD -0.8776
47 C29 0.7342 -2.7765 -3.5720 C.2 1 LGD 0.9205
48 N2 -0.3134 0.4616 0.2132 N.pl3 1 LGD -0.8783
49 O18 4.5092 1.9983 7.2351 O.3 1 LGD -0.3807
50 N3 1.9466 1.7059 8.3681 N.pl3 1 LGD -0.8710
51 C30 -4.5778 1.2180 4.7091 C.2 1 LGD 0.9507
52 C31 5.6532 1.8784 6.3749 C.3 1 LGD 0.1341
53 S1 4.3256 -1.1472 -6.3776 S.O2 1 LGD 1.4205
54 O19 4.0593 -2.5345 -6.0394 O.co2 1 LGD -0.7082
55 O20 4.0013 -0.1523 -5.3716 O.co2 1 LGD -0.7082
56 O21 5.4888 -0.8449 -7.1931 O.co2 1 LGD -0.7082
57 O22 -2.2930 0.3921 -8.5675 O.3 1 LGD -0.5651
58 S2 -3.8572 -0.0321 -8.4412 S.O2 1 LGD 1.5404
59 O23 -3.8303 -1.4250 -8.0281 O.co2 1 LGD -0.7316
60 O24 -4.3888 0.1786 -9.7774 O.co2 1 LGD -0.7316
61 O25 -4.3820 0.8783 -7.4381 O.co2 1 LGD -0.7316
62 O26 1.3373 4.5710 3.3173 O.3 1 LGD -0.5349
63 S3 1.6750 5.9396 2.5051 S.O2 1 LGD 1.5528
64 O27 1.8667 6.9319 3.5498 O.co2 1 LGD -0.7571
65 O28 0.4982 6.1639 1.6838 O.co2 1 LGD -0.7571
66 O29 2.8820 5.6357 1.7542 O.co2 1 LGD -0.7571
67 S4 1.6519 -1.5289 5.1231 S.O2 1 LGD 1.5376
68 O30 -4.2195 -3.3056 1.4185 O.3 1 LGD -0.5777
69 S5 -4.5788 -4.4420 2.5250 S.O2 1 LGD 1.5470
70 O31 -4.6182 -5.6847 1.7717 O.co2 1 LGD -0.7549
71 O32 -5.8663 -4.0239 3.0526 O.co2 1 LGD -0.7549
72 O33 -3.4881 -4.3650 3.4818 O.co2 1 LGD -0.7549
73 O34 2.0188 -0.8047 6.3297 O.co2 1 LGD -0.7352
74 O35 2.6831 -1.5413 4.1009 O.co2 1 LGD -0.7352
75 O36 1.0409 -2.8223 5.3775 O.co2 1 LGD -0.7352
76 S6 1.6662 -3.6319 0.8724 S.O2 1 LGD 1.5411
77 O37 2.0174 -4.6350 -0.1177 O.co2 1 LGD -0.7289
78 O38 1.5473 -4.1615 2.2191 O.co2 1 LGD -0.7289
79 O39 2.4411 -2.4065 0.7731 O.co2 1 LGD -0.7289
80 O40 -4.8299 1.0714 5.8944 O.co2 1 LGD -0.8807
81 O41 -5.4045 1.4405 3.8409 O.co2 1 LGD -0.8807
82 O42 1.7226 -2.1224 -3.2884 O.co2 1 LGD -0.7876
83 O43 0.4829 -3.8873 -3.1370 O.co2 1 LGD -0.7876
84 S7 0.5444 1.8321 0.8285 S.O2 1 LGD 1.4382
85 S8 1.9470 1.4468 10.0688 S.O2 1 LGD 1.4348
86 O44 -0.5200 2.4427 1.6046 O.co2 1 LGD -0.7301
87 O45 0.8562 2.4877 -0.4290 O.co2 1 LGD -0.7301
88 O46 1.6258 1.2309 1.5885 O.co2 1 LGD -0.7301
89 O47 1.2207 0.1917 10.1363 O.co2 1 LGD -0.7606
90 O48 1.2913 2.6552 10.5386 O.co2 1 LGD -0.7606
91 O49 3.3803 1.3901 10.2968 O.co2 1 LGD -0.7606
92 H1 0.7201 -1.0316 -10.9463 H 1 LGD -0.0042
93 H2 2.5560 -2.2460 -9.5737 H 1 LGD 0.0195
94 H3 1.9143 -2.4777 -7.0907 H 1 LGD 0.1320
95 H4 -0.2697 -1.3857 -7.1334 H 1 LGD 0.0520
96 H5 -0.0621 1.1359 -9.8001 H 1 LGD 0.0324
97 H6 0.1942 -0.1474 -3.7912 H 1 LGD 0.1787
98 H7 -1.8512 -0.4093 -6.0277 H 1 LGD 0.0086
99 H8 -0.7121 1.5391 -6.1318 H 1 LGD 0.4008
100 H9 -0.1729 -2.6491 -5.4712 H 1 LGD 0.0006
101 H10 -3.3003 -1.8657 -2.8852 H 1 LGD 0.0574
102 H11 -2.5133 0.6892 -3.2966 H 1 LGD 0.0869
103 H12 0.6546 -1.7292 -0.8709 H 1 LGD 0.1169
104 H13 -1.3767 -3.1986 -1.5156 H 1 LGD 0.0728
105 H14 0.5051 -0.9201 1.5908 H 1 LGD 0.1389
106 H15 -1.6074 -2.0095 2.2180 H 1 LGD 0.0518
107 H16 -3.6273 -2.0478 -0.8640 H 1 LGD 0.0201
108 H17 -3.6075 -0.7414 3.3726 H 1 LGD 0.0655
109 H18 -1.6193 -2.0187 4.3170 H 1 LGD 0.1244
110 H19 -3.2175 -0.4993 6.1244 H 1 LGD 0.4198
111 H20 -2.9775 1.9525 3.4845 H 1 LGD 0.0812
112 H21 -0.5495 1.5789 4.1879 H 1 LGD 0.1200
113 H22 -0.4987 -0.5853 6.3333 H 1 LGD 0.0511
114 H23 0.6927 5.5055 6.4782 H 1 LGD 0.3999
115 H24 0.2874 3.6810 7.9179 H 1 LGD 0.0468
116 H25 -0.1107 3.7496 5.3722 H 1 LGD 0.0541
117 H26 2.7743 3.6221 8.5756 H 1 LGD 0.0070
118 H27 3.8272 3.7560 6.3600 H 1 LGD -0.0132
119 H28 1.4257 2.0822 4.0830 H 1 LGD 0.1883
120 H29 0.6969 -3.2909 -10.1654 H 1 LGD 0.3396
121 H30 -1.7475 -0.5188 -10.3643 H 1 LGD 0.0272
122 H31 -1.4010 -1.4661 -8.9013 H 1 LGD 0.0272
123 H32 -3.7706 0.2840 -5.4854 H 1 LGD 0.4207
124 H33 -3.2216 -4.3218 -0.1090 H 1 LGD 0.0484
125 H34 -2.1918 -3.7632 1.2241 H 1 LGD 0.0484
126 H35 2.7626 4.7293 4.8287 H 1 LGD 0.0212
127 H36 3.2055 3.6596 3.4790 H 1 LGD 0.0212
128 H37 2.2036 0.9046 -9.6084 H 1 LGD 0.4359
129 H38 3.2475 0.0123 -8.1358 H 1 LGD 0.3702
130 H39 -0.8659 0.5911 -0.6196 H 1 LGD 0.3956
131 H40 1.7497 0.9207 7.7620 H 1 LGD 0.5128
132 H41 6.4354 1.2953 6.8762 H 1 LGD 0.0038
133 H42 5.3812 1.3673 5.4427 H 1 LGD 0.0038
134 H43 6.0550 2.8707 6.1343 H 1 LGD 0.0038
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1