@COMMENT
LIGANDBOX_ID = D01844-21
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-21
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -2.5906 0.6041 9.7231 C.3 1 LGD 0.0884
2 C2 -2.2086 1.9603 9.0392 C.3 1 LGD 0.0951
3 C3 -1.3980 1.7607 7.7242 C.3 1 LGD 0.2567
4 C4 -2.0914 0.6958 6.8313 C.3 1 LGD 0.3084
5 O1 -2.2255 -0.5342 7.5780 O.3 1 LGD -0.4281
6 C5 -3.1183 -0.4683 8.7181 C.3 1 LGD 0.1331
7 O2 -1.2911 0.4432 5.6572 O.3 1 LGD -0.3281
8 C6 -1.9441 0.4594 4.3597 C.3 1 LGD 0.0952
9 C7 -3.0872 -0.5865 4.2914 C.3 1 LGD 0.0842
10 O3 -2.6214 -1.8859 4.6501 O.3 1 LGD -0.6086
11 C8 -2.4695 1.9001 4.0245 C.3 1 LGD -0.0087
12 O4 -3.6294 1.8172 3.1396 O.3 1 LGD -0.4677
13 C9 -3.6437 0.7610 2.1441 C.3 1 LGD 0.3437
14 C10 -3.7446 -0.6134 2.8774 C.3 1 LGD 0.1323
15 O5 -0.6736 3.3142 -0.6056 O.3 1 LGD -0.6170
16 C11 -0.8159 2.0183 0.0174 C.3 1 LGD 0.2138
17 C12 -2.3303 1.8328 0.3551 C.3 1 LGD 0.1210
18 O6 -2.4278 0.7940 1.3592 O.3 1 LGD -0.3956
19 C13 -0.2690 0.9273 -0.9555 C.3 1 LGD 0.2492
20 C14 -1.2361 0.7678 -2.1577 C.3 1 LGD 0.3100
21 O7 -2.5411 0.4189 -1.6500 O.3 1 LGD -0.4349
22 C15 -3.2082 1.4503 -0.8856 C.3 1 LGD 0.1454
23 O8 -0.7818 -0.2922 -3.0191 O.3 1 LGD -0.3168
24 C16 -1.2546 -0.2388 -4.3856 C.3 1 LGD 0.1037
25 C17 -0.4527 0.8631 -5.1474 C.3 1 LGD 0.0977
26 O9 -0.9377 0.9385 -6.4902 O.3 1 LGD -0.6327
27 C18 -1.0371 -1.6475 -5.0508 C.3 1 LGD 0.0242
28 O10 0.2412 -1.6819 -5.7529 O.3 1 LGD -0.5000
29 C19 1.3223 -1.0109 -5.0760 C.3 1 LGD 0.3224
30 C20 1.0721 0.5187 -5.1677 C.3 1 LGD 0.1617
31 O11 4.6132 -0.4911 -4.0764 O.3 1 LGD -0.6458
32 C21 4.0527 -1.7860 -3.8484 C.3 1 LGD 0.1052
33 C22 3.3697 -2.3397 -5.1493 C.3 1 LGD 0.1045
34 O12 2.5566 -1.3101 -5.7485 O.3 1 LGD -0.4212
35 C23 5.1729 -2.7412 -3.3519 C.3 1 LGD 0.2831
36 C24 6.1363 -3.0515 -4.5317 C.3 1 LGD 0.3042
37 O13 5.3733 -3.6924 -5.5788 O.3 1 LGD -0.4988
38 C25 4.3822 -2.8581 -6.2245 C.3 1 LGD 0.1622
39 O14 -3.3870 2.7182 8.7635 O.3 1 LGD -0.5716
40 C26 -4.5837 -0.2587 8.2520 C.3 1 LGD 0.1737
41 O15 -5.1166 -0.9870 3.0231 O.3 1 LGD -0.6485
42 C27 -3.5568 2.6516 -1.8076 C.3 1 LGD 0.1510
43 O16 1.7115 1.1060 -4.0156 O.3 1 LGD -0.5468
44 C28 5.1000 -1.7703 -7.0736 C.3 1 LGD 0.1713
45 O17 -1.4511 0.0736 10.4004 O.3 1 LGD -0.6465
46 N1 -0.0162 1.3694 8.0579 N.pl3 1 LGD -0.8771
47 C29 -1.3995 2.8674 3.4717 C.2 1 LGD 0.9188
48 N2 -0.1206 -0.3473 -0.2324 N.pl3 1 LGD -0.8761
49 O18 7.1755 -3.9448 -4.0948 O.3 1 LGD -0.3610
50 N3 4.5755 -3.9741 -2.8131 N.pl3 1 LGD -0.8787
51 C30 -1.2082 -2.8421 -4.0837 C.2 1 LGD 0.9542
52 C31 8.2928 -4.0286 -4.9927 C.3 1 LGD 0.1329
53 S1 1.3797 2.1366 7.3895 S.O2 1 LGD 1.4195
54 O19 0.8723 3.4177 6.9301 O.co2 1 LGD -0.7077
55 O20 1.6998 1.1534 6.3708 O.co2 1 LGD -0.7077
56 O21 2.2356 2.1119 8.5626 O.co2 1 LGD -0.7077
57 O22 -4.8934 -1.2773 7.2846 O.3 1 LGD -0.5636
58 S2 -6.3762 -1.2924 6.6183 S.O2 1 LGD 1.5405
59 O23 -6.5934 0.0722 6.1687 O.co2 1 LGD -0.7322
60 O24 -7.2478 -1.7024 7.7066 O.co2 1 LGD -0.7322
61 O25 -6.2625 -2.2641 5.5444 O.co2 1 LGD -0.7322
62 O26 4.2419 -1.4172 -8.1741 O.3 1 LGD -0.5613
63 S3 4.7566 -0.2863 -9.2244 S.O2 1 LGD 1.5461
64 O27 4.8828 0.9207 -8.4260 O.co2 1 LGD -0.7519
65 O28 3.7046 -0.2338 -10.2252 O.co2 1 LGD -0.7519
66 O29 6.0230 -0.8009 -9.7190 O.co2 1 LGD -0.7519
67 S4 2.4798 2.5305 -4.1861 S.O2 1 LGD 1.5169
68 O30 -4.2599 2.1513 -2.9609 O.3 1 LGD -0.5786
69 S5 -4.5412 3.1734 -4.1943 S.O2 1 LGD 1.5471
70 O31 -5.2266 4.3007 -3.5837 O.co2 1 LGD -0.7583
71 O32 -5.3633 2.4007 -5.1098 O.co2 1 LGD -0.7583
72 O33 -3.2184 3.4913 -4.7041 O.co2 1 LGD -0.7583
73 O34 3.4869 2.2726 -5.2015 O.co2 1 LGD -0.7248
74 O35 3.0266 2.7945 -2.8680 O.co2 1 LGD -0.7248
75 O36 1.4427 3.4565 -4.6075 O.co2 1 LGD -0.7248
76 S6 0.6567 4.2227 -0.3521 S.O2 1 LGD 1.5371
77 O37 0.2685 5.1105 0.7298 O.co2 1 LGD -0.7284
78 O38 0.8542 4.9049 -1.6188 O.co2 1 LGD -0.7284
79 O39 1.7101 3.2871 0.0019 O.co2 1 LGD -0.7284
80 O40 -2.3133 -2.9930 -3.5898 O.co2 1 LGD -0.8439
81 O41 -0.2597 -3.5922 -3.9207 O.co2 1 LGD -0.8439
82 O42 -0.2286 2.5472 3.5775 O.co2 1 LGD -0.7849
83 O43 -1.8018 3.8794 2.9238 O.co2 1 LGD -0.7849
84 S7 1.3515 -1.2478 -0.2192 S.O2 1 LGD 1.4379
85 S8 4.9005 -4.5220 -1.2141 S.O2 1 LGD 1.4290
86 O44 1.2050 -1.9409 -1.4859 O.co2 1 LGD -0.7263
87 O45 1.1280 -2.0401 0.9773 O.co2 1 LGD -0.7263
88 O46 2.3512 -0.1953 -0.1847 O.co2 1 LGD -0.7263
89 O47 3.9884 -5.6502 -1.1564 O.co2 1 LGD -0.7333
90 O48 4.5696 -3.3305 -0.4541 O.co2 1 LGD -0.7333
91 O49 6.3201 -4.8087 -1.3228 O.co2 1 LGD -0.7333
92 H1 -3.3729 0.8001 10.4675 H 1 LGD -0.0055
93 H2 -1.5916 2.5399 9.7382 H 1 LGD 0.0188
94 H3 -1.3976 2.7101 7.1759 H 1 LGD 0.1332
95 H4 -3.0810 1.0587 6.5355 H 1 LGD 0.0518
96 H5 -3.0926 -1.4392 9.2292 H 1 LGD 0.0313
97 H6 -1.1998 0.1816 3.6015 H 1 LGD 0.1839
98 H7 -3.8589 -0.2760 5.0065 H 1 LGD 0.0055
99 H8 -2.2962 -1.8200 5.5663 H 1 LGD 0.3996
100 H9 -2.8151 2.3718 4.9513 H 1 LGD -0.0026
101 H10 -4.5126 0.8848 1.4889 H 1 LGD 0.0541
102 H11 -3.2291 -1.3631 2.2631 H 1 LGD 0.0925
103 H12 -0.2455 1.9963 0.9550 H 1 LGD 0.1212
104 H13 -2.7062 2.7733 0.7767 H 1 LGD 0.0694
105 H14 0.7059 1.2506 -1.3412 H 1 LGD 0.1340
106 H15 -1.2814 1.7070 -2.7179 H 1 LGD 0.0425
107 H16 -4.1629 1.0466 -0.5298 H 1 LGD 0.0188
108 H17 -2.3264 -0.0005 -4.3956 H 1 LGD 0.0503
109 H18 -0.6028 1.8361 -4.6645 H 1 LGD 0.1409
110 H19 -0.7166 0.0887 -6.9115 H 1 LGD 0.3775
111 H20 -1.8234 -1.7695 -5.8066 H 1 LGD -0.0073
112 H21 1.3615 -1.3307 -4.0269 H 1 LGD 0.1572
113 H22 1.5242 0.9023 -6.0919 H 1 LGD 0.0452
114 H23 3.8873 0.0948 -4.3620 H 1 LGD 0.4708
115 H24 3.2962 -1.7044 -3.0591 H 1 LGD 0.1596
116 H25 2.7291 -3.1856 -4.8666 H 1 LGD 0.0822
117 H26 5.7389 -2.2375 -2.5579 H 1 LGD 0.0832
118 H27 6.5880 -2.1236 -4.9019 H 1 LGD 0.0277
119 H28 3.8183 -3.4865 -6.9246 H 1 LGD 0.0532
120 H29 -3.7454 3.0136 9.6183 H 1 LGD 0.3381
121 H30 -5.2565 -0.3424 9.1147 H 1 LGD 0.0265
122 H31 -4.7142 0.7355 7.8104 H 1 LGD 0.0265
123 H32 -5.2087 -1.4382 3.8840 H 1 LGD 0.4193
124 H33 -4.1885 3.3628 -1.2609 H 1 LGD 0.0497
125 H34 -2.6472 3.1766 -2.1204 H 1 LGD 0.0497
126 H35 5.3304 -0.8862 -6.4689 H 1 LGD 0.0335
127 H36 6.0419 -2.1783 -7.4616 H 1 LGD 0.0335
128 H37 -1.0501 -0.5803 9.8009 H 1 LGD 0.4363
129 H38 0.1355 0.6227 8.7151 H 1 LGD 0.3695
130 H39 -0.9232 -0.7491 0.2254 H 1 LGD 0.3960
131 H40 3.8867 -4.4770 -3.3464 H 1 LGD 0.4164
132 H41 9.0467 -4.7137 -4.5859 H 1 LGD -0.0151
133 H42 7.9708 -4.4022 -5.9728 H 1 LGD -0.0151
134 H43 8.7519 -3.0400 -5.1213 H 1 LGD -0.0151
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1