@COMMENT
LIGANDBOX_ID = D01844-22
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-22
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0791 -0.7972 -9.9887 C.3 1 LGD 0.0891
2 C2 1.5602 -2.0255 -9.1448 C.3 1 LGD 0.0953
3 C3 1.7912 -1.6692 -7.6461 C.3 1 LGD 0.2567
4 C4 0.5745 -0.8749 -7.0968 C.3 1 LGD 0.3093
5 O1 0.3703 0.3018 -7.9106 O.3 1 LGD -0.4272
6 C5 -0.0291 0.0440 -9.2799 C.3 1 LGD 0.1330
7 O2 0.8299 -0.4603 -5.7381 O.3 1 LGD -0.3282
8 C6 -0.1893 -0.7132 -4.7343 C.3 1 LGD 0.0955
9 C7 -1.5345 -0.0416 -5.1149 C.3 1 LGD 0.0838
10 O3 -1.3624 1.3500 -5.3755 O.3 1 LGD -0.6077
11 C8 -0.3659 -2.2557 -4.5055 C.3 1 LGD -0.0083
12 O4 -1.7295 -2.5437 -4.0666 O.3 1 LGD -0.4679
13 C9 -2.3782 -1.5766 -3.1995 C.3 1 LGD 0.3439
14 C10 -2.6089 -0.2599 -4.0059 C.3 1 LGD 0.1327
15 O5 0.0816 -3.3255 0.4992 O.3 1 LGD -0.6182
16 C11 -0.2107 -2.0804 -0.1731 C.3 1 LGD 0.2143
17 C12 -1.5075 -2.3097 -1.0158 C.3 1 LGD 0.1211
18 O6 -1.5461 -1.2942 -2.0478 O.3 1 LGD -0.3965
19 C13 -0.3579 -0.9506 0.8959 C.3 1 LGD 0.2454
20 C14 -1.6844 -1.1433 1.6771 C.3 1 LGD 0.3090
21 O7 -2.7753 -1.1300 0.7336 O.3 1 LGD -0.4278
22 C15 -2.8268 -2.2564 -0.1716 C.3 1 LGD 0.1445
23 O8 -1.8787 -0.0672 2.6129 O.3 1 LGD -0.3131
24 C16 -2.7154 -0.3787 3.7519 C.3 1 LGD 0.1042
25 C17 -1.8690 -1.2044 4.7719 C.3 1 LGD 0.0956
26 O9 -2.7016 -1.5555 5.8796 O.3 1 LGD -0.6351
27 C18 -3.2220 0.9643 4.3991 C.3 1 LGD 0.0215
28 O10 -2.3368 1.3645 5.4879 O.3 1 LGD -0.5061
29 C19 -0.9379 1.1594 5.2177 C.3 1 LGD 0.3252
30 C20 -0.6536 -0.3650 5.2856 C.3 1 LGD 0.1689
31 O11 1.3428 5.1103 6.8413 O.3 1 LGD -0.6387
32 C21 0.9602 3.7582 7.1162 C.3 1 LGD 0.1215
33 C22 0.4958 3.0478 5.8105 C.3 1 LGD 0.1078
34 O12 -0.1497 1.8233 6.2221 O.3 1 LGD -0.4356
35 C23 2.1315 2.9754 7.7846 C.3 1 LGD 0.2638
36 C24 3.2644 2.6914 6.7583 C.3 1 LGD 0.3349
37 O13 2.6979 1.9799 5.6340 O.3 1 LGD -0.3905
38 C25 1.6924 2.6790 4.8623 C.3 1 LGD 0.1326
39 O14 0.6117 -3.0885 -9.2425 O.3 1 LGD -0.5719
40 C26 -1.4497 -0.5789 -9.3251 C.3 1 LGD 0.1738
41 O15 -3.8974 -0.2884 -4.6243 O.3 1 LGD -0.6481
42 C27 -3.1212 -3.5598 0.6218 C.3 1 LGD 0.1510
43 O16 0.4887 -0.6077 4.4391 O.3 1 LGD -0.5313
44 C28 2.3447 3.8720 4.1148 C.3 1 LGD 0.1637
45 O17 2.1905 0.0548 -10.2675 O.3 1 LGD -0.6467
46 N1 3.0432 -0.9013 -7.5165 N.pl3 1 LGD -0.8780
47 C29 0.6814 -2.8946 -3.5660 C.2 1 LGD 0.9198
48 N2 -0.3198 0.3639 0.2313 N.pl3 1 LGD -0.8732
49 O18 4.2539 1.8489 7.3784 O.3 1 LGD -0.3899
50 N3 2.6606 3.7386 8.9246 N.pl3 1 LGD -0.8956
51 C30 -3.4615 2.1087 3.3862 C.2 1 LGD 0.9529
52 C31 5.4442 1.6605 6.5956 C.3 1 LGD 0.1374
53 S1 4.2666 -1.2614 -6.3512 S.O2 1 LGD 1.4197
54 O19 3.9927 -2.6418 -5.9921 O.co2 1 LGD -0.7073
55 O20 3.9332 -0.2484 -5.3664 O.co2 1 LGD -0.7073
56 O21 5.4397 -0.9760 -7.1587 O.co2 1 LGD -0.7073
57 O22 -2.3325 0.2711 -8.5717 O.3 1 LGD -0.5636
58 S2 -3.8989 -0.1464 -8.4496 S.O2 1 LGD 1.5405
59 O23 -3.8793 -1.5418 -8.0443 O.co2 1 LGD -0.7321
60 O24 -4.4277 0.0742 -9.7852 O.co2 1 LGD -0.7321
61 O25 -4.4209 0.7608 -7.4421 O.co2 1 LGD -0.7321
62 O26 1.3415 4.5052 3.3027 O.3 1 LGD -0.5187
63 S3 1.7541 5.8476 2.4813 S.O2 1 LGD 1.5522
64 O27 1.9428 6.8498 3.5170 O.co2 1 LGD -0.7581
65 O28 0.6157 6.0990 1.6148 O.co2 1 LGD -0.7581
66 O29 2.9758 5.4922 1.7781 O.co2 1 LGD -0.7581
67 S4 1.6145 -1.6750 4.9323 S.O2 1 LGD 1.5278
68 O30 -4.2668 -3.3305 1.4647 O.3 1 LGD -0.5759
69 S5 -4.6306 -4.4455 2.5911 S.O2 1 LGD 1.5475
70 O31 -4.7392 -5.6906 1.8487 O.co2 1 LGD -0.7589
71 O32 -5.8843 -3.9770 3.1566 O.co2 1 LGD -0.7589
72 O33 -3.5079 -4.4022 3.5123 O.co2 1 LGD -0.7589
73 O34 2.0849 -1.1445 6.2011 O.co2 1 LGD -0.7313
74 O35 2.6097 -1.6509 3.8758 O.co2 1 LGD -0.7313
75 O36 0.8941 -2.9308 5.0548 O.co2 1 LGD -0.7313
76 S6 1.6180 -3.7725 0.8160 S.O2 1 LGD 1.5387
77 O37 1.9160 -4.7425 -0.2232 O.co2 1 LGD -0.7292
78 O38 1.5389 -4.3529 2.1447 O.co2 1 LGD -0.7292
79 O39 2.4098 -2.5571 0.7344 O.co2 1 LGD -0.7292
80 O40 -4.3177 1.9199 2.5382 O.co2 1 LGD -0.8385
81 O41 -2.8327 3.1445 3.5281 O.co2 1 LGD -0.8385
82 O42 1.6737 -2.2442 -3.2879 O.co2 1 LGD -0.7865
83 O43 0.4251 -4.0022 -3.1259 O.co2 1 LGD -0.7865
84 S7 0.6597 1.6736 0.7897 S.O2 1 LGD 1.4227
85 S8 2.3738 3.2639 10.5525 S.O2 1 LGD 1.4307
86 O44 -0.2696 2.2633 1.7349 O.co2 1 LGD -0.7214
87 O45 0.8281 2.3875 -0.4636 O.co2 1 LGD -0.7214
88 O46 1.8078 0.9986 1.3682 O.co2 1 LGD -0.7214
89 O47 3.1875 4.2521 11.2382 O.co2 1 LGD -0.7512
90 O48 2.8340 1.8868 10.5273 O.co2 1 LGD -0.7512
91 O49 0.9330 3.4390 10.6011 O.co2 1 LGD -0.7512
92 H1 0.6810 -1.1667 -10.9424 H 1 LGD -0.0052
93 H2 2.5103 -2.3830 -9.5629 H 1 LGD 0.0183
94 H3 1.8650 -2.6057 -7.0809 H 1 LGD 0.1315
95 H4 -0.3177 -1.5086 -7.1307 H 1 LGD 0.0512
96 H5 -0.0971 1.0063 -9.8032 H 1 LGD 0.0320
97 H6 0.1451 -0.2638 -3.7899 H 1 LGD 0.1817
98 H7 -1.8999 -0.5310 -6.0262 H 1 LGD 0.0059
99 H8 -0.7599 1.4161 -6.1385 H 1 LGD 0.3997
100 H9 -0.2288 -2.7693 -5.4640 H 1 LGD -0.0018
101 H10 -3.3458 -1.9706 -2.8706 H 1 LGD 0.0549
102 H11 -2.5647 0.5805 -3.3011 H 1 LGD 0.0922
103 H12 0.6089 -1.8345 -0.8606 H 1 LGD 0.1195
104 H13 -1.4361 -3.2960 -1.4910 H 1 LGD 0.0690
105 H14 0.4711 -1.0305 1.6092 H 1 LGD 0.1342
106 H15 -1.6550 -2.0967 2.2142 H 1 LGD 0.0390
107 H16 -3.6745 -2.1090 -0.8501 H 1 LGD 0.0201
108 H17 -3.5841 -0.9635 3.4213 H 1 LGD 0.0513
109 H18 -1.5046 -2.1240 4.2980 H 1 LGD 0.1410
110 H19 -2.9828 -0.7177 6.2890 H 1 LGD 0.3723
111 H20 -4.2045 0.7565 4.8415 H 1 LGD -0.0095
112 H21 -0.7022 1.5475 4.2191 H 1 LGD 0.1598
113 H22 -0.4256 -0.6425 6.3231 H 1 LGD 0.0283
114 H23 0.6193 5.5194 6.3346 H 1 LGD 0.4045
115 H24 0.1150 3.7730 7.8160 H 1 LGD 0.0360
116 H25 -0.2277 3.6836 5.2830 H 1 LGD 0.0934
117 H26 1.7432 2.0132 8.1425 H 1 LGD 0.1253
118 H27 3.7307 3.6267 6.4281 H 1 LGD -0.0013
119 H28 1.3301 1.9984 4.0821 H 1 LGD 0.1930
120 H29 0.6739 -3.4472 -10.1448 H 1 LGD 0.3385
121 H30 -1.7872 -0.6423 -10.3672 H 1 LGD 0.0264
122 H31 -1.4458 -1.5900 -8.9032 H 1 LGD 0.0264
123 H32 -3.8203 0.1650 -5.4856 H 1 LGD 0.4199
124 H33 -3.3266 -4.3791 -0.0784 H 1 LGD 0.0475
125 H34 -2.2559 -3.8438 1.2315 H 1 LGD 0.0475
126 H35 2.7677 4.5969 4.8187 H 1 LGD 0.0198
127 H36 3.1568 3.4957 3.4802 H 1 LGD 0.0198
128 H37 2.1664 0.7691 -9.6064 H 1 LGD 0.4368
129 H38 3.2152 -0.1369 -8.1479 H 1 LGD 0.3691
130 H39 -0.9353 0.5369 -0.5476 H 1 LGD 0.3970
131 H40 3.0730 4.6420 8.7644 H 1 LGD 0.3861
132 H41 6.1592 1.0391 7.1486 H 1 LGD 0.0044
133 H42 5.2066 1.1594 5.6487 H 1 LGD 0.0044
134 H43 5.9149 2.6278 6.3787 H 1 LGD 0.0044
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1