@COMMENT
LIGANDBOX_ID = D01844-23
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-23
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1343 -0.8052 -10.0016 C.3 1 LGD 0.0895
2 C2 1.6128 -2.0334 -9.1558 C.3 1 LGD 0.0953
3 C3 1.8419 -1.6760 -7.6571 C.3 1 LGD 0.2566
4 C4 0.6244 -0.8808 -7.1114 C.3 1 LGD 0.3090
5 O1 0.4235 0.2962 -7.9255 O.3 1 LGD -0.4263
6 C5 0.0260 0.0382 -9.2952 C.3 1 LGD 0.1330
7 O2 0.8748 -0.4673 -5.7516 O.3 1 LGD -0.3273
8 C6 -0.1462 -0.7273 -4.7516 C.3 1 LGD 0.0954
9 C7 -1.4926 -0.0586 -5.1341 C.3 1 LGD 0.0841
10 O3 -1.3242 1.3347 -5.3877 O.3 1 LGD -0.6068
11 C8 -0.3179 -2.2714 -4.5288 C.3 1 LGD -0.0079
12 O4 -1.6824 -2.5659 -4.0967 O.3 1 LGD -0.4687
13 C9 -2.3374 -1.6041 -3.2285 C.3 1 LGD 0.3441
14 C10 -2.5707 -0.2857 -4.0307 C.3 1 LGD 0.1324
15 O5 0.1174 -3.3485 0.4755 O.3 1 LGD -0.6197
16 C11 -0.1721 -2.1069 -0.2043 C.3 1 LGD 0.2141
17 C12 -1.4702 -2.3366 -1.0442 C.3 1 LGD 0.1217
18 O6 -1.5082 -1.3214 -2.0756 O.3 1 LGD -0.3954
19 C13 -0.3165 -0.9689 0.8554 C.3 1 LGD 0.2430
20 C14 -1.6416 -1.1545 1.6398 C.3 1 LGD 0.3097
21 O7 -2.7350 -1.1462 0.6992 O.3 1 LGD -0.4268
22 C15 -2.7882 -2.2787 -0.1984 C.3 1 LGD 0.1446
23 O8 -1.8305 -0.0732 2.5706 O.3 1 LGD -0.3124
24 C16 -2.6719 -0.3742 3.7087 C.3 1 LGD 0.1047
25 C17 -1.8433 -1.2233 4.7235 C.3 1 LGD 0.0997
26 O9 -2.6809 -1.5575 5.8327 O.3 1 LGD -0.6339
27 C18 -3.1459 0.9750 4.3669 C.3 1 LGD 0.0232
28 O10 -2.2381 1.3596 5.4429 O.3 1 LGD -0.5096
29 C19 -0.8456 1.1165 5.1672 C.3 1 LGD 0.3270
30 C20 -0.6090 -0.4149 5.2343 C.3 1 LGD 0.1669
31 O11 1.1855 5.0948 6.9833 O.3 1 LGD -0.6514
32 C21 0.9319 3.7033 7.1856 C.3 1 LGD 0.1315
33 C22 0.5345 3.0202 5.8423 C.3 1 LGD 0.1120
34 O12 -0.0417 1.7416 6.1817 O.3 1 LGD -0.4318
35 C23 2.1706 3.0271 7.8499 C.3 1 LGD 0.2598
36 C24 3.3355 2.7803 6.8442 C.3 1 LGD 0.3161
37 O13 2.8366 2.1464 5.6372 O.3 1 LGD -0.3376
38 C25 1.7569 2.7744 4.8923 C.3 1 LGD 0.1195
39 O14 0.6633 -3.0954 -9.2539 O.3 1 LGD -0.5717
40 C26 -1.3956 -0.5824 -9.3424 C.3 1 LGD 0.1739
41 O15 -3.8565 -0.3173 -4.6543 O.3 1 LGD -0.6485
42 C27 -3.0811 -3.5773 0.6039 C.3 1 LGD 0.1510
43 O16 0.5235 -0.6930 4.3873 O.3 1 LGD -0.5263
44 C28 2.2703 4.0309 4.1409 C.3 1 LGD 0.1667
45 O17 2.2472 0.0452 -10.2792 O.3 1 LGD -0.6473
46 N1 3.0942 -0.9090 -7.5260 N.pl3 1 LGD -0.8781
47 C29 0.7286 -2.9092 -3.5872 C.2 1 LGD 0.9198
48 N2 -0.2783 0.3389 0.1776 N.pl3 1 LGD -0.8730
49 O18 4.0145 4.0100 6.5186 O.3 1 LGD -0.4395
50 N3 1.7851 1.7420 8.4467 N.pl3 1 LGD -0.8816
51 C30 -3.3886 2.1271 3.3644 C.2 1 LGD 0.9538
52 C31 4.9850 4.4417 7.4867 C.3 1 LGD 0.1616
53 S1 4.3110 -1.2631 -6.3520 S.O2 1 LGD 1.4192
54 O19 4.0359 -2.6423 -5.9890 O.co2 1 LGD -0.7069
55 O20 3.9708 -0.2466 -5.3731 O.co2 1 LGD -0.7069
56 O21 5.4886 -0.9801 -7.1536 O.co2 1 LGD -0.7069
57 O22 -2.2781 0.2686 -8.5897 O.3 1 LGD -0.5633
58 S2 -3.8450 -0.1472 -8.4683 S.O2 1 LGD 1.5404
59 O23 -3.8272 -1.5427 -8.0632 O.co2 1 LGD -0.7321
60 O24 -4.3729 0.0742 -9.8041 O.co2 1 LGD -0.7321
61 O25 -4.3665 0.7604 -7.4609 O.co2 1 LGD -0.7321
62 O26 1.2624 4.4477 3.2051 O.3 1 LGD -0.5181
63 S3 1.5555 5.7786 2.3157 S.O2 1 LGD 1.5517
64 O27 1.6275 6.8514 3.2942 O.co2 1 LGD -0.7572
65 O28 0.4157 5.8694 1.4202 O.co2 1 LGD -0.7572
66 O29 2.8190 5.5053 1.6507 O.co2 1 LGD -0.7572
67 S4 1.7098 -1.6382 4.9754 S.O2 1 LGD 1.5308
68 O30 -4.2227 -3.3424 1.4503 O.3 1 LGD -0.5758
69 S5 -4.5806 -4.4501 2.5859 S.O2 1 LGD 1.5475
70 O31 -4.6952 -5.6996 1.8517 O.co2 1 LGD -0.7588
71 O32 -5.8303 -3.9768 3.1563 O.co2 1 LGD -0.7588
72 O33 -3.4521 -4.4025 3.4997 O.co2 1 LGD -0.7588
73 O34 2.1457 -0.9588 6.1845 O.co2 1 LGD -0.7332
74 O35 2.7028 -1.6609 3.9166 O.co2 1 LGD -0.7332
75 O36 1.0605 -2.9148 5.2212 O.co2 1 LGD -0.7332
76 S6 1.6499 -3.7824 0.8273 S.O2 1 LGD 1.5403
77 O37 1.9647 -4.7803 -0.1801 O.co2 1 LGD -0.7297
78 O38 1.5514 -4.3250 2.1706 O.co2 1 LGD -0.7297
79 O39 2.4411 -2.5680 0.7237 O.co2 1 LGD -0.7297
80 O40 -4.2388 1.9410 2.5097 O.co2 1 LGD -0.8376
81 O41 -2.7662 3.1648 3.5199 O.co2 1 LGD -0.8376
82 O42 1.7211 -2.2586 -3.3104 O.co2 1 LGD -0.7871
83 O43 0.4717 -4.0152 -3.1436 O.co2 1 LGD -0.7871
84 S7 0.6446 1.6796 0.7588 S.O2 1 LGD 1.4224
85 S8 2.2593 1.3084 10.0419 S.O2 1 LGD 1.4363
86 O44 -0.3811 2.3192 1.5605 O.co2 1 LGD -0.7197
87 O45 0.9397 2.3210 -0.5102 O.co2 1 LGD -0.7197
88 O46 1.7287 1.0490 1.4907 O.co2 1 LGD -0.7197
89 O47 1.6009 0.0201 10.1608 O.co2 1 LGD -0.7605
90 O48 1.7188 2.4284 10.7927 O.co2 1 LGD -0.7605
91 O49 3.7027 1.3147 9.8787 O.co2 1 LGD -0.7605
92 H1 0.7373 -1.1750 -10.9555 H 1 LGD -0.0054
93 H2 2.5632 -2.3924 -9.5720 H 1 LGD 0.0178
94 H3 1.9141 -2.6122 -7.0909 H 1 LGD 0.1314
95 H4 -0.2681 -1.5139 -7.1488 H 1 LGD 0.0509
96 H5 -0.0396 1.0003 -9.8192 H 1 LGD 0.0317
97 H6 0.1841 -0.2800 -3.8048 H 1 LGD 0.1832
98 H7 -1.8528 -0.5450 -6.0489 H 1 LGD 0.0050
99 H8 -0.7171 1.4066 -6.1465 H 1 LGD 0.3995
100 H9 -0.1750 -2.7816 -5.4883 H 1 LGD -0.0024
101 H10 -3.3039 -2.0028 -2.9020 H 1 LGD 0.0544
102 H11 -2.5329 0.5523 -3.3225 H 1 LGD 0.0933
103 H12 0.6480 -1.8681 -0.8936 H 1 LGD 0.1192
104 H13 -1.4012 -3.3235 -1.5185 H 1 LGD 0.0675
105 H14 0.5137 -1.0450 1.5674 H 1 LGD 0.1366
106 H15 -1.6119 -2.1052 2.1814 H 1 LGD 0.0372
107 H16 -3.6368 -2.1357 -0.8769 H 1 LGD 0.0191
108 H17 -3.5537 -0.9376 3.3761 H 1 LGD 0.0505
109 H18 -1.4978 -2.1505 4.2495 H 1 LGD 0.1377
110 H19 -2.9361 -0.7149 6.2492 H 1 LGD 0.3727
111 H20 -4.1238 0.7802 4.8251 H 1 LGD -0.0124
112 H21 -0.5923 1.5035 4.1719 H 1 LGD 0.1562
113 H22 -0.3922 -0.7012 6.2720 H 1 LGD 0.0327
114 H23 0.5277 5.4208 6.3442 H 1 LGD 0.4115
115 H24 0.0822 3.6140 7.8749 H 1 LGD 0.0229
116 H25 -0.2203 3.6341 5.3327 H 1 LGD 0.0894
117 H26 2.5281 3.6818 8.6539 H 1 LGD 0.0075
118 H27 4.0653 2.1007 7.3000 H 1 LGD 0.0726
119 H28 1.4478 2.0714 4.1086 H 1 LGD 0.1900
120 H29 0.7364 -3.4646 -10.1511 H 1 LGD 0.3382
121 H30 -1.7320 -0.6448 -10.3850 H 1 LGD 0.0262
122 H31 -1.3938 -1.5938 -8.9211 H 1 LGD 0.0262
123 H32 -3.7797 0.1472 -5.5097 H 1 LGD 0.4198
124 H33 -3.2899 -4.4005 -0.0907 H 1 LGD 0.0469
125 H34 -2.2137 -3.8587 1.2117 H 1 LGD 0.0469
126 H35 2.4848 4.8494 4.8348 H 1 LGD 0.0250
127 H36 3.1937 3.7768 3.6054 H 1 LGD 0.0250
128 H37 2.2233 0.7596 -9.6181 H 1 LGD 0.4371
129 H38 3.2714 -0.1501 -8.1627 H 1 LGD 0.3686
130 H39 -0.8696 0.4907 -0.6240 H 1 LGD 0.3959
131 H40 1.3384 1.0412 7.8730 H 1 LGD 0.4952
132 H41 5.4874 5.3487 7.1289 H 1 LGD -0.0157
133 H42 4.5003 4.6690 8.4442 H 1 LGD -0.0157
134 H43 5.7405 3.6620 7.6455 H 1 LGD -0.0157
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1