@COMMENT
LIGANDBOX_ID = D01844-24
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D01844
NAME = Fondaparinux_sodium_(JAN/USP/INN)_Arixtra_(TN)
MOLECULAR_FORMULA = C31H43N3O49S8
MOLECULAR_WEIGHT = 1498.177
MOLECULAR_CHARGE = -10
NUM_OF_DONOR = 9
NUM_OF_ACCEPTOR = 49
NUM_OF_CHIRAL_ATOMS = 25
TPSA = 833.7800
HOMO = 12.9918
LUMO = 16.3845
mLOGPA = -12.277
mLOGS = 2.735
mLOGD = -8.441
@MOLECULE
D01844-24
134 138 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0285 -0.4110 -9.9045 C.3 1 LGD 0.0957
2 C2 1.5275 -1.6544 -9.0987 C.3 1 LGD 0.0840
3 C3 1.6915 -1.3420 -7.5817 C.3 1 LGD 0.2488
4 C4 0.4147 -0.6490 -7.0431 C.3 1 LGD 0.3108
5 O1 0.1828 0.5562 -7.8051 O.3 1 LGD -0.4277
6 C5 -0.1431 0.3520 -9.2026 C.3 1 LGD 0.1468
7 O2 0.6181 -0.2855 -5.6628 O.3 1 LGD -0.3444
8 C6 -0.4194 -0.6107 -4.7026 C.3 1 LGD 0.0997
9 C7 -1.7747 0.0350 -5.0943 C.3 1 LGD 0.0867
10 O3 -1.6402 1.4417 -5.2873 O.3 1 LGD -0.6042
11 C8 -0.5550 -2.1669 -4.5367 C.3 1 LGD -0.0075
12 O4 -1.9075 -2.5091 -4.0966 O.3 1 LGD -0.4669
13 C9 -2.5873 -1.5700 -3.2237 C.3 1 LGD 0.3483
14 C10 -2.8789 -0.2682 -4.0337 C.3 1 LGD 0.1293
15 O5 -0.0474 -3.0167 0.5875 O.3 1 LGD -0.6224
16 C11 -0.3218 -1.8734 -0.2527 C.3 1 LGD 0.2170
17 C12 -1.6585 -2.1687 -1.0085 C.3 1 LGD 0.1252
18 O6 -1.7399 -1.2311 -2.1054 O.3 1 LGD -0.4046
19 C13 -0.4283 -0.5918 0.6309 C.3 1 LGD 0.2517
20 C14 -1.6559 -0.7664 1.5644 C.3 1 LGD 0.3102
21 O7 -2.8344 -0.8417 0.7304 O.3 1 LGD -0.4330
22 C15 -2.9360 -2.0266 -0.1048 C.3 1 LGD 0.1496
23 O8 -1.7634 0.3541 2.4660 O.3 1 LGD -0.3229
24 C16 -2.6069 0.1741 3.6286 C.3 1 LGD 0.1096
25 C17 -1.9266 -0.8220 4.6247 C.3 1 LGD 0.1060
26 O9 -2.8194 -1.0414 5.7197 O.3 1 LGD -0.6367
27 C18 -2.8274 1.5742 4.3138 C.3 1 LGD 0.0244
28 O10 -1.8590 1.7767 5.3862 O.3 1 LGD -0.5210
29 C19 -0.5264 1.2987 5.1117 C.3 1 LGD 0.3172
30 C20 -0.5785 -0.2541 5.1732 C.3 1 LGD 0.1776
31 O11 1.1594 5.0796 7.4743 O.3 1 LGD -0.6597
32 C21 0.9633 3.6640 7.5117 C.3 1 LGD 0.1052
33 C22 0.8282 3.1264 6.0549 C.3 1 LGD 0.1126
34 O12 0.3596 1.7638 6.1456 O.3 1 LGD -0.3868
35 C23 2.1541 2.9974 8.2779 C.3 1 LGD 0.3018
36 C24 3.4496 3.0066 7.4101 C.3 1 LGD 0.3276
37 O13 3.1530 2.4097 6.1331 O.3 1 LGD -0.3576
38 C25 2.2218 3.1799 5.3481 C.3 1 LGD 0.1390
39 O14 0.6250 -2.7472 -9.2705 O.3 1 LGD -0.5714
40 C26 -1.5348 -0.3240 -9.3340 C.3 1 LGD 0.1682
41 O15 -4.1358 -0.3791 -4.7044 O.3 1 LGD -0.6507
42 C27 -3.2132 -3.2732 0.7776 C.3 1 LGD 0.1502
43 O16 0.5067 -0.7611 4.3696 O.3 1 LGD -0.5247
44 C28 2.2650 2.6649 3.8975 C.3 1 LGD 0.2040
45 O17 2.1241 0.4848 -10.0918 O.3 1 LGD -0.6659
46 N1 2.8629 -0.4783 -7.3578 N.pl3 1 LGD -0.8845
47 C29 0.5199 -2.8077 -3.6289 C.2 1 LGD 0.9153
48 N2 -0.5800 0.5699 -0.2673 N.pl3 1 LGD -0.8790
49 O18 4.4797 2.2354 8.0588 O.3 1 LGD -0.3885
50 N3 1.8020 1.6255 8.6701 N.pl3 1 LGD -0.8721
51 C30 -2.8666 2.7684 3.3333 C.2 1 LGD 0.9618
52 C31 5.7592 2.2837 7.4051 C.3 1 LGD 0.1356
53 S1 4.4281 -1.1204 -7.0194 S.O2 1 LGD 1.4136
54 O19 4.2938 -2.5271 -7.3575 O.co2 1 LGD -0.7222
55 O20 4.5095 -0.7690 -5.6135 O.co2 1 LGD -0.7222
56 O21 5.2074 -0.2765 -7.9077 O.co2 1 LGD -0.7222
57 O22 -2.4783 0.4475 -8.5685 O.3 1 LGD -0.5631
58 S2 -4.0216 -0.0581 -8.4918 S.O2 1 LGD 1.5415
59 O23 -3.9332 -1.4594 -8.1173 O.co2 1 LGD -0.7346
60 O24 -4.5334 0.1643 -9.8337 O.co2 1 LGD -0.7346
61 O25 -4.6149 0.7946 -7.4761 O.co2 1 LGD -0.7346
62 O26 3.6071 2.8632 3.4128 O.3 1 LGD -0.6461
63 S3 3.9301 2.5940 1.8411 S.O2 1 LGD 1.5310
64 O27 3.3857 1.2755 1.5686 O.co2 1 LGD -0.7204
65 O28 5.3800 2.6670 1.7705 O.co2 1 LGD -0.7204
66 O29 3.2516 3.6789 1.1523 O.co2 1 LGD -0.7204
67 S4 1.7619 -1.4780 5.1251 S.O2 1 LGD 1.5332
68 O30 -4.4161 -3.0355 1.5327 O.3 1 LGD -0.5769
69 S5 -4.9034 -4.1775 2.5833 S.O2 1 LGD 1.5506
70 O31 -5.0504 -5.3759 1.7736 O.co2 1 LGD -0.7625
71 O32 -6.1540 -3.6585 3.1103 O.co2 1 LGD -0.7625
72 O33 -3.8292 -4.2518 3.5587 O.co2 1 LGD -0.7625
73 O34 2.1044 -0.5908 6.2250 O.co2 1 LGD -0.7318
74 O35 2.7866 -1.5753 4.1014 O.co2 1 LGD -0.7318
75 O36 1.2238 -2.7573 5.5560 O.co2 1 LGD -0.7318
76 S6 1.4826 -3.4550 0.9378 S.O2 1 LGD 1.5334
77 O37 1.7961 -4.4488 -0.0741 O.co2 1 LGD -0.7234
78 O38 1.3826 -4.0008 2.2798 O.co2 1 LGD -0.7234
79 O39 2.2714 -2.2398 0.8350 O.co2 1 LGD -0.7234
80 O40 -3.8517 2.8531 2.6193 O.co2 1 LGD -0.8464
81 O41 -1.9704 3.5946 3.3944 O.co2 1 LGD -0.8464
82 O42 1.5606 -2.1959 -3.4628 O.co2 1 LGD -0.7887
83 O43 0.2400 -3.8670 -3.0943 O.co2 1 LGD -0.7887
84 S7 -0.2447 2.1996 0.1753 S.O2 1 LGD 1.4552
85 S8 1.4918 1.2133 10.3102 S.O2 1 LGD 1.4341
86 O44 -1.5889 2.7338 0.0488 O.co2 1 LGD -0.7338
87 O45 0.6473 2.5458 -0.9172 O.co2 1 LGD -0.7338
88 O46 0.3145 2.0699 1.5064 O.co2 1 LGD -0.7338
89 O47 1.0948 -0.1745 10.1574 O.co2 1 LGD -0.7602
90 O48 0.4658 2.1895 10.6342 O.co2 1 LGD -0.7602
91 O49 2.7985 1.4820 10.8851 O.co2 1 LGD -0.7602
92 H1 0.6822 -0.7455 -10.8907 H 1 LGD -0.0101
93 H2 2.5044 -1.9567 -9.4979 H 1 LGD 0.0288
94 H3 1.8243 -2.2837 -7.0337 H 1 LGD 0.1221
95 H4 -0.4425 -1.3242 -7.1349 H 1 LGD 0.0568
96 H5 -0.2291 1.3356 -9.6816 H 1 LGD 0.0414
97 H6 -0.1195 -0.1894 -3.7342 H 1 LGD 0.1832
98 H7 -2.0929 -0.4231 -6.0388 H 1 LGD 0.0058
99 H8 -1.0074 1.5623 -6.0185 H 1 LGD 0.4008
100 H9 -0.4120 -2.6382 -5.5158 H 1 LGD -0.0032
101 H10 -3.5279 -2.0019 -2.8643 H 1 LGD 0.0540
102 H11 -2.9220 0.5673 -3.3226 H 1 LGD 0.0954
103 H12 0.4837 -1.7546 -0.9890 H 1 LGD 0.1162
104 H13 -1.6134 -3.1886 -1.4107 H 1 LGD 0.0652
105 H14 0.4805 -0.4794 1.2355 H 1 LGD 0.1489
106 H15 -1.5407 -1.6879 2.1415 H 1 LGD 0.0431
107 H16 -3.8078 -1.9099 -0.7593 H 1 LGD 0.0206
108 H17 -3.5799 -0.2234 3.3114 H 1 LGD 0.0445
109 H18 -1.7381 -1.7847 4.1347 H 1 LGD 0.1294
110 H19 -2.9053 -0.1883 6.1817 H 1 LGD 0.3766
111 H20 -3.8206 1.5470 4.7799 H 1 LGD -0.0092
112 H21 -0.1950 1.6423 4.1242 H 1 LGD 0.1538
113 H22 -0.4634 -0.5836 6.2145 H 1 LGD 0.0360
114 H23 0.3115 5.4776 7.2097 H 1 LGD 0.3745
115 H24 0.0321 3.4551 8.0539 H 1 LGD 0.0542
116 H25 0.1008 3.7404 5.5071 H 1 LGD 0.0704
117 H26 2.3489 3.5816 9.1864 H 1 LGD -0.0011
118 H27 3.7988 4.0360 7.2645 H 1 LGD -0.0313
119 H28 2.5509 4.2263 5.3184 H 1 LGD -0.0167
120 H29 0.6409 -2.9874 -10.2132 H 1 LGD 0.3409
121 H30 -1.8344 -0.3460 -10.3892 H 1 LGD 0.0230
122 H31 -1.5018 -1.3548 -8.9644 H 1 LGD 0.0230
123 H32 -4.0712 0.1321 -5.5338 H 1 LGD 0.4212
124 H33 -3.3433 -4.1506 0.1319 H 1 LGD 0.0514
125 H34 -2.3742 -3.4696 1.4548 H 1 LGD 0.0514
126 H35 1.9945 1.6027 3.8518 H 1 LGD 0.1120
127 H36 1.5588 3.2501 3.2975 H 1 LGD 0.1120
128 H37 2.6897 0.3963 -9.3014 H 1 LGD 0.4686
129 H38 2.7098 0.4982 -7.1577 H 1 LGD 0.4277
130 H39 -0.9682 0.4171 -1.1844 H 1 LGD 0.3936
131 H40 1.7418 0.9018 7.9659 H 1 LGD 0.5164
132 H41 6.4933 1.7063 7.9802 H 1 LGD 0.0038
133 H42 5.6930 1.8545 6.3971 H 1 LGD 0.0038
134 H43 6.1101 3.3205 7.3283 H 1 LGD 0.0038
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 8 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 1
16 15 16 1
17 16 17 1
18 17 18 1
19 13 18 1
20 16 19 1
21 19 20 1
22 20 21 1
23 21 22 1
24 17 22 1
25 20 23 1
26 23 24 1
27 24 25 1
28 25 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 25 30 1
34 31 32 1
35 32 33 1
36 33 34 1
37 29 34 1
38 32 35 1
39 35 36 1
40 36 37 1
41 37 38 1
42 33 38 1
43 2 39 1
44 6 40 1
45 14 41 1
46 22 42 1
47 30 43 1
48 38 44 1
49 1 45 1
50 3 46 1
51 11 47 1
52 19 48 1
53 36 49 1
54 35 50 1
55 27 51 1
56 49 52 1
57 46 53 1
58 53 54 2
59 53 55 1
60 53 56 2
61 40 57 1
62 57 58 1
63 58 59 2
64 58 60 2
65 58 61 1
66 44 62 1
67 62 63 1
68 63 64 2
69 63 65 1
70 63 66 2
71 43 67 1
72 42 68 1
73 68 69 1
74 69 70 2
75 69 71 1
76 69 72 2
77 67 73 1
78 67 74 2
79 67 75 2
80 15 76 1
81 76 77 1
82 76 78 2
83 76 79 2
84 51 80 1
85 51 81 2
86 47 82 2
87 47 83 1
88 48 84 1
89 50 85 1
90 84 86 1
91 84 87 2
92 84 88 2
93 85 89 2
94 85 90 2
95 85 91 1
96 1 92 1
97 2 93 1
98 3 94 1
99 4 95 1
100 6 96 1
101 8 97 1
102 9 98 1
103 10 99 1
104 11 100 1
105 13 101 1
106 14 102 1
107 16 103 1
108 17 104 1
109 19 105 1
110 20 106 1
111 22 107 1
112 24 108 1
113 25 109 1
114 26 110 1
115 27 111 1
116 29 112 1
117 30 113 1
118 31 114 1
119 32 115 1
120 33 116 1
121 35 117 1
122 36 118 1
123 38 119 1
124 39 120 1
125 40 121 1
126 40 122 1
127 41 123 1
128 42 124 1
129 42 125 1
130 44 126 1
131 44 127 1
132 45 128 1
133 46 129 1
134 48 130 1
135 50 131 1
136 52 132 1
137 52 133 1
138 52 134 1