@COMMENT
LIGANDBOX_ID = D02230-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02230
NAME = Gramicidin_S_hydrochloride_(JAN)_Gramicidin_S_dihydrochloride
MOLECULAR_FORMULA = C60H92N12O10
MOLECULAR_WEIGHT = 1141.470
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 12
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 10
TPSA = 325.4600
HOMO = -11.7203
LUMO = -5.1043
mLOGPA = -6.120
mLOGD = -0.419
mLOGS = 1.546
@MOLECULE
D02230-02
176 180 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 2.4655 -1.1470 3.2147 C.3 1 LGD 0.0510
2 C2 3.7360 -2.0183 3.1732 C.3 1 LGD -0.0826
3 C3 4.8668 -1.0555 2.7756 C.3 1 LGD -0.0949
4 C4 4.1723 0.1190 2.0625 C.3 1 LGD 0.1026
5 N1 2.7454 0.0541 2.4123 N.am 1 LGD -0.5083
6 C5 3.9094 -1.9674 -1.4100 C.3 1 LGD 0.0510
7 C6 4.8567 -3.1375 -1.0744 C.3 1 LGD -0.0826
8 C7 3.9394 -4.3297 -0.7485 C.3 1 LGD -0.0949
9 C8 2.5714 -3.7167 -0.3959 C.3 1 LGD 0.1026
10 N2 2.5946 -2.3179 -0.8529 N.am 1 LGD -0.5083
11 C9 1.5270 -1.4243 -0.8366 C.2 1 LGD 0.6813
12 O1 1.7015 -0.2245 -0.9535 O.2 1 LGD -0.5942
13 N3 3.2165 -2.7628 -3.6867 N.am 1 LGD -0.5995
14 C10 2.8213 -2.6646 -5.1076 C.3 1 LGD 0.0664
15 C11 3.9698 -2.2042 -6.0673 C.3 1 LGD -0.0716
16 C12 5.2931 -2.9706 -5.8022 C.3 1 LGD -0.0898
17 C13 3.5530 -2.3904 -7.5494 C.3 1 LGD -0.0898
18 C14 1.5285 -1.8384 -5.2653 C.2 1 LGD 0.6530
19 O2 0.4982 -2.3602 -5.6564 O.2 1 LGD -0.5858
20 N4 1.5351 -0.4849 -4.9494 N.am 1 LGD -0.6069
21 C15 0.3793 0.4029 -5.1816 C.3 1 LGD 0.0643
22 C16 0.7693 1.5442 -6.1595 C.3 1 LGD -0.1031
23 C17 1.1641 1.0243 -7.5652 C.3 1 LGD -0.1191
24 C18 -0.1481 0.9651 -3.8525 C.2 1 LGD 0.6580
25 O3 -1.2241 0.6168 -3.3969 O.2 1 LGD -0.5777
26 N5 0.6164 1.9046 -3.1771 N.am 1 LGD -0.5832
27 C19 0.1445 2.6203 -1.9812 C.3 1 LGD 0.0613
28 C20 1.3227 2.8270 -1.0207 C.2 1 LGD 0.6718
29 O4 2.4326 3.1502 -1.4127 O.2 1 LGD -0.6112
30 N6 1.1079 2.5804 0.3251 N.am 1 LGD -0.5697
31 C21 3.7513 -1.7316 -2.9205 C.2 1 LGD 0.6561
32 O5 4.0494 -0.6651 -3.4292 O.2 1 LGD -0.5839
33 C22 1.4558 2.1644 -8.5641 C.3 1 LGD 0.0977
34 N7 0.2144 2.8997 -8.8702 N.4 1 LGD -0.8205
35 C23 2.2002 2.2033 1.2330 C.3 1 LGD 0.0624
36 C24 2.6165 3.4028 2.1221 C.3 1 LGD -0.0340
37 C25 -0.5246 3.9553 -2.4115 C.3 1 LGD -0.0825
38 C26 -0.9791 4.8746 -1.2390 C.3 1 LGD -0.0691
39 C27 -1.5449 6.2063 -1.7880 C.3 1 LGD -0.0875
40 C28 -2.0177 4.1947 -0.3110 C.3 1 LGD -0.0875
41 C29 1.5112 3.8688 3.0665 C.ar 1 LGD -0.0873
42 C30 0.5215 4.7636 2.6187 C.ar 1 LGD -0.1160
43 C31 -0.4943 5.1923 3.4875 C.ar 1 LGD -0.1290
44 C32 -0.5198 4.7386 4.8150 C.ar 1 LGD -0.1331
45 C33 0.4699 3.8541 5.2711 C.ar 1 LGD -0.1290
46 C34 1.4793 3.4175 4.3991 C.ar 1 LGD -0.1160
47 N8 1.0234 -1.3842 5.2533 N.am 1 LGD -0.5995
48 C35 0.4633 -0.9485 6.5469 C.3 1 LGD 0.0664
49 C36 -0.1752 -2.1562 7.2997 C.3 1 LGD -0.0716
50 C37 -1.3300 -2.8353 6.5170 C.3 1 LGD -0.0898
51 C38 0.9029 -3.1970 7.6953 C.3 1 LGD -0.0898
52 C39 -0.5289 0.2129 6.3413 C.2 1 LGD 0.6530
53 O6 -0.6158 1.1251 7.1451 O.2 1 LGD -0.5858
54 N9 -1.3135 0.2278 5.1964 N.am 1 LGD -0.6069
55 C40 -2.2173 1.3385 4.8460 C.3 1 LGD 0.0643
56 C41 -3.5726 1.2126 5.6032 C.3 1 LGD -0.1031
57 C42 -4.4272 -0.0238 5.2081 C.3 1 LGD -0.1191
58 C43 -2.3875 1.3903 3.3192 C.2 1 LGD 0.6580
59 O7 -2.3162 2.4370 2.6989 O.2 1 LGD -0.5777
60 N10 -2.5909 0.1930 2.6483 N.am 1 LGD -0.5832
61 C44 -2.5291 0.0479 1.1874 C.3 1 LGD 0.0613
62 C45 -1.5164 -1.0612 0.8454 C.2 1 LGD 0.6718
63 O8 -1.2456 -1.9498 1.6393 O.2 1 LGD -0.6112
64 N11 -0.8750 -1.0208 -0.3840 N.am 1 LGD -0.5697
65 C46 2.0902 -0.7384 4.6491 C.2 1 LGD 0.6561
66 O9 2.6812 0.1443 5.2495 O.2 1 LGD -0.5839
67 C47 -5.6160 -0.2578 6.1636 C.3 1 LGD 0.0977
68 N12 -6.5715 0.8609 6.0633 N.4 1 LGD -0.8205
69 C48 0.1118 -2.0336 -0.8012 C.3 1 LGD 0.0624
70 C49 -0.2719 -2.5867 -2.1991 C.3 1 LGD -0.0340
71 C50 -3.9607 -0.2731 0.6738 C.3 1 LGD -0.0825
72 C51 -4.1229 -0.2958 -0.8737 C.3 1 LGD -0.0691
73 C52 -5.5209 -0.8345 -1.2603 C.3 1 LGD -0.0875
74 C53 -3.8940 1.0998 -1.5040 C.3 1 LGD -0.0875
75 C54 -1.7105 -3.0883 -2.3026 C.ar 1 LGD -0.0873
76 C55 -2.5033 -2.7098 -3.4033 C.ar 1 LGD -0.1160
77 C56 -3.8288 -3.1592 -3.5120 C.ar 1 LGD -0.1290
78 C57 -4.3709 -3.9939 -2.5232 C.ar 1 LGD -0.1331
79 C58 -3.5858 -4.3805 -1.4263 C.ar 1 LGD -0.1290
80 C59 -2.2593 -3.9334 -1.3174 C.ar 1 LGD -0.1160
81 C60 1.7607 0.9792 2.0667 C.2 1 LGD 0.6813
82 O10 0.5933 0.8125 2.3805 O.2 1 LGD -0.5942
83 H1 1.6215 -1.6939 2.7742 H 1 LGD 0.0888
84 H2 3.6280 -2.7903 2.4019 H 1 LGD 0.0652
85 H3 3.9343 -2.5167 4.1310 H 1 LGD 0.0652
86 H4 5.6120 -1.5397 2.1319 H 1 LGD 0.0643
87 H5 5.3730 -0.6903 3.6784 H 1 LGD 0.0643
88 H6 4.2793 0.0154 0.9764 H 1 LGD 0.0510
89 H7 4.6049 1.0741 2.3848 H 1 LGD 0.0510
90 H8 4.2766 -1.0406 -0.9527 H 1 LGD 0.0888
91 H9 5.4487 -2.8814 -0.1862 H 1 LGD 0.0652
92 H10 5.5521 -3.3617 -1.8937 H 1 LGD 0.0652
93 H11 3.8398 -4.9722 -1.6327 H 1 LGD 0.0643
94 H12 4.3356 -4.9373 0.0750 H 1 LGD 0.0643
95 H13 2.4119 -3.7367 0.6890 H 1 LGD 0.0510
96 H14 1.7683 -4.2765 -0.8898 H 1 LGD 0.0510
97 H15 3.0096 -3.6256 -3.2054 H 1 LGD 0.3204
98 H16 2.5531 -3.6838 -5.4150 H 1 LGD 0.1073
99 H17 4.1630 -1.1351 -5.9162 H 1 LGD 0.0635
100 H18 6.0611 -2.6829 -6.5314 H 1 LGD 0.0404
101 H19 5.1407 -4.0548 -5.8786 H 1 LGD 0.0404
102 H20 5.6906 -2.7495 -4.8040 H 1 LGD 0.0404
103 H21 2.6292 -1.8462 -7.7782 H 1 LGD 0.0404
104 H22 3.3849 -3.4504 -7.7789 H 1 LGD 0.0404
105 H23 4.3348 -2.0165 -8.2227 H 1 LGD 0.0404
106 H24 2.3840 -0.0954 -4.5604 H 1 LGD 0.3393
107 H25 -0.4512 -0.1564 -5.6304 H 1 LGD 0.1214
108 H26 1.6026 2.1258 -5.7437 H 1 LGD 0.0511
109 H27 -0.0825 2.2305 -6.2493 H 1 LGD 0.0511
110 H28 0.3728 0.3761 -7.9637 H 1 LGD 0.0899
111 H29 2.0670 0.4086 -7.4788 H 1 LGD 0.0899
112 H30 1.5338 2.1276 -3.5357 H 1 LGD 0.3207
113 H31 -0.5906 2.0018 -1.4528 H 1 LGD 0.0892
114 H32 0.1617 2.4182 0.6393 H 1 LGD 0.3335
115 H33 1.8565 1.7446 -9.4893 H 1 LGD 0.1143
116 H34 2.1937 2.8507 -8.1426 H 1 LGD 0.1143
117 H35 -0.1465 3.3248 -8.0278 H 1 LGD 0.4603
118 H36 0.4032 3.6207 -9.5528 H 1 LGD 0.4603
119 H37 3.0651 1.9071 0.6285 H 1 LGD 0.0922
120 H38 2.9285 4.2338 1.4764 H 1 LGD 0.0618
121 H39 3.5058 3.1265 2.7021 H 1 LGD 0.0618
122 H40 -1.3902 3.7282 -3.0478 H 1 LGD 0.0436
123 H41 0.1828 4.5127 -3.0397 H 1 LGD 0.0436
124 H42 -0.0971 5.1253 -0.6377 H 1 LGD 0.0631
125 H43 -2.4336 6.0303 -2.4077 H 1 LGD 0.0366
126 H44 -0.7969 6.7240 -2.4019 H 1 LGD 0.0366
127 H45 -1.8279 6.8773 -0.9671 H 1 LGD 0.0366
128 H46 -2.3090 4.8701 0.5034 H 1 LGD 0.0366
129 H47 -1.6123 3.2861 0.1475 H 1 LGD 0.0366
130 H48 -2.9234 3.9253 -0.8682 H 1 LGD 0.0366
131 H49 0.5416 5.1295 1.5975 H 1 LGD 0.1369
132 H50 -1.2581 5.8782 3.1327 H 1 LGD 0.1349
133 H51 -1.3036 5.0721 5.4889 H 1 LGD 0.1286
134 H52 0.4541 3.5054 6.2995 H 1 LGD 0.1349
135 H53 2.2398 2.7325 4.7614 H 1 LGD 0.1369
136 H54 0.5693 -2.1344 4.7535 H 1 LGD 0.3204
137 H55 1.2726 -0.5555 7.1762 H 1 LGD 0.1073
138 H56 -0.6000 -1.7673 8.2346 H 1 LGD 0.0635
139 H57 -2.1606 -2.1383 6.3609 H 1 LGD 0.0404
140 H58 -1.7241 -3.6915 7.0791 H 1 LGD 0.0404
141 H59 -0.9948 -3.2012 5.5384 H 1 LGD 0.0404
142 H60 0.4695 -3.9847 8.3244 H 1 LGD 0.0404
143 H61 1.7126 -2.7217 8.2637 H 1 LGD 0.0404
144 H62 1.3414 -3.6733 6.8091 H 1 LGD 0.0404
145 H63 -1.1722 -0.5106 4.5228 H 1 LGD 0.3393
146 H64 -1.7467 2.2836 5.1411 H 1 LGD 0.1214
147 H65 -4.1570 2.1241 5.4235 H 1 LGD 0.0511
148 H66 -3.3739 1.1843 6.6824 H 1 LGD 0.0511
149 H67 -3.8018 -0.9239 5.2101 H 1 LGD 0.0899
150 H68 -4.8099 0.0951 4.1866 H 1 LGD 0.0899
151 H69 -2.6713 -0.6492 3.1981 H 1 LGD 0.3207
152 H70 -2.1680 0.9772 0.7323 H 1 LGD 0.0892
153 H71 -1.1023 -0.2751 -1.0267 H 1 LGD 0.3335
154 H72 -5.2582 -0.3429 7.1921 H 1 LGD 0.1143
155 H73 -6.1244 -1.1854 5.8915 H 1 LGD 0.1143
156 H74 -6.1231 1.7179 6.3558 H 1 LGD 0.4603
157 H75 -7.3700 0.6829 6.6567 H 1 LGD 0.4603
158 H76 0.1218 -2.8652 -0.0883 H 1 LGD 0.0922
159 H77 0.4122 -3.3968 -2.4781 H 1 LGD 0.0618
160 H78 -0.1076 -1.7934 -2.9358 H 1 LGD 0.0618
161 H79 -4.6599 0.4658 1.0875 H 1 LGD 0.0436
162 H80 -4.2660 -1.2457 1.0822 H 1 LGD 0.0436
163 H81 -3.3854 -0.9858 -1.2971 H 1 LGD 0.0631
164 H82 -6.3148 -0.1835 -0.8727 H 1 LGD 0.0366
165 H83 -5.6758 -1.8420 -0.8539 H 1 LGD 0.0366
166 H84 -5.6277 -0.8931 -2.3510 H 1 LGD 0.0366
167 H85 -4.5824 1.8414 -1.0792 H 1 LGD 0.0366
168 H86 -4.0553 1.0670 -2.5890 H 1 LGD 0.0366
169 H87 -2.8691 1.4466 -1.3345 H 1 LGD 0.0366
170 H88 -2.0947 -2.0632 -4.1750 H 1 LGD 0.1369
171 H89 -4.4351 -2.8596 -4.3619 H 1 LGD 0.1349
172 H90 -5.3967 -4.3412 -2.6073 H 1 LGD 0.1286
173 H91 -4.0037 -5.0295 -0.6621 H 1 LGD 0.1349
174 H92 -1.6622 -4.2468 -0.4662 H 1 LGD 0.1369
175 H93 -0.4752 2.2618 -9.2426 H 1 LGD 0.4603
176 H94 -6.8826 0.9580 5.1070 H 1 LGD 0.4603
@BOND
1 28 30 am
2 13 14 1
3 41 42 ar
4 42 43 ar
5 43 44 ar
6 44 45 ar
7 45 46 ar
8 41 46 ar
9 14 15 1
10 15 16 1
11 15 17 1
12 14 18 1
13 18 19 2
14 18 20 am
15 20 21 1
16 21 22 1
17 22 23 1
18 21 24 1
19 24 25 2
20 24 26 am
21 26 27 1
22 8 9 1
23 13 31 am
24 9 10 1
25 31 32 2
26 6 10 1
27 61 62 1
28 62 63 2
29 62 64 am
30 47 48 1
31 48 49 1
32 49 50 1
33 49 51 1
34 48 52 1
35 52 53 2
36 52 54 am
37 54 55 1
38 55 56 1
39 56 57 1
40 55 58 1
41 58 59 2
42 58 60 am
43 60 61 1
44 23 33 1
45 47 65 am
46 1 5 1
47 65 66 2
48 33 34 1
49 57 67 1
50 67 68 1
51 30 35 1
52 64 69 1
53 11 12 2
54 69 70 1
55 35 36 1
56 61 71 1
57 1 2 1
58 71 72 1
59 27 37 1
60 72 73 1
61 2 3 1
62 72 74 1
63 37 38 1
64 70 75 1
65 3 4 1
66 38 39 1
67 4 5 1
68 38 40 1
69 6 7 1
70 75 76 ar
71 76 77 ar
72 77 78 ar
73 78 79 ar
74 79 80 ar
75 75 80 ar
76 36 41 1
77 7 8 1
78 81 82 2
79 11 69 1
80 35 81 1
81 6 31 1
82 10 11 am
83 1 65 1
84 5 81 am
85 27 28 1
86 28 29 2
87 1 83 1
88 2 84 1
89 2 85 1
90 3 86 1
91 3 87 1
92 4 88 1
93 4 89 1
94 6 90 1
95 7 91 1
96 7 92 1
97 8 93 1
98 8 94 1
99 9 95 1
100 9 96 1
101 13 97 1
102 14 98 1
103 15 99 1
104 16 100 1
105 16 101 1
106 16 102 1
107 17 103 1
108 17 104 1
109 17 105 1
110 20 106 1
111 21 107 1
112 22 108 1
113 22 109 1
114 23 110 1
115 23 111 1
116 26 112 1
117 27 113 1
118 30 114 1
119 33 115 1
120 33 116 1
121 34 117 1
122 34 118 1
123 35 119 1
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128 38 124 1
129 39 125 1
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132 40 128 1
133 40 129 1
134 40 130 1
135 42 131 1
136 43 132 1
137 44 133 1
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154 57 150 1
155 60 151 1
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157 64 153 1
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160 68 156 1
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177 79 173 1
178 80 174 1
179 34 175 1
180 68 176 1