@COMMENT
LIGANDBOX_ID = D02230-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02230
NAME = Gramicidin_S_hydrochloride_(JAN)_Gramicidin_S_dihydrochloride
MOLECULAR_FORMULA = C60H92N12O10
MOLECULAR_WEIGHT = 1141.470
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 12
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 10
TPSA = 325.4600
HOMO = -11.7203
LUMO = -5.1043
mLOGPA = -6.120
mLOGD = -0.419
mLOGS = 1.546
@MOLECULE
D02230-03
176 180 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -3.2775 -1.5994 3.4613 C.3 1 LGD 0.0470
2 C2 -3.3211 -1.3509 4.9800 C.3 1 LGD -0.0818
3 C3 -2.6560 -2.5835 5.6128 C.3 1 LGD -0.0917
4 C4 -1.8364 -3.2475 4.4898 C.3 1 LGD 0.1007
5 N1 -2.3175 -2.6940 3.2137 N.am 1 LGD -0.5052
6 C5 2.2381 3.5626 3.1768 C.3 1 LGD 0.0470
7 C6 2.0331 4.8760 3.9560 C.3 1 LGD -0.0818
8 C7 0.8213 5.5393 3.2858 C.3 1 LGD -0.0917
9 C8 0.7916 4.9790 1.8518 C.3 1 LGD 0.1007
10 N2 1.6249 3.7647 1.8396 N.am 1 LGD -0.5052
11 C9 1.7493 2.8692 0.7696 C.2 1 LGD 0.6753
12 O1 2.4670 1.8898 0.8379 O.2 1 LGD -0.5987
13 N3 4.5935 3.8847 2.3365 N.am 1 LGD -0.5939
14 C10 5.8517 3.3582 1.7673 C.3 1 LGD 0.0707
15 C11 6.9155 2.9130 2.8296 C.3 1 LGD -0.0725
16 C12 7.1201 3.9914 3.9257 C.3 1 LGD -0.0897
17 C13 8.2709 2.5856 2.1524 C.3 1 LGD -0.0897
18 C14 5.5247 2.2901 0.7026 C.2 1 LGD 0.6583
19 O2 5.3559 2.6130 -0.4617 O.2 1 LGD -0.6087
20 N4 5.4084 0.9508 1.0672 N.am 1 LGD -0.5865
21 C15 4.8922 -0.0863 0.1494 C.3 1 LGD 0.0751
22 C16 6.0400 -0.8349 -0.5837 C.3 1 LGD -0.0992
23 C17 6.8965 0.0941 -1.4867 C.3 1 LGD -0.1165
24 C18 3.9748 -1.0683 0.9075 C.2 1 LGD 0.6645
25 O3 4.2204 -1.4414 2.0418 O.2 1 LGD -0.5625
26 N5 2.8292 -1.5145 0.2621 N.am 1 LGD -0.5926
27 C19 1.6410 -2.0734 0.9490 C.3 1 LGD 0.0678
28 C20 0.9827 -3.1396 0.0366 C.2 1 LGD 0.6610
29 O4 1.3749 -3.3270 -1.1026 O.2 1 LGD -0.6137
30 N6 -0.0901 -3.9292 0.4303 N.am 1 LGD -0.5760
31 C21 3.7130 3.1284 3.0990 C.2 1 LGD 0.6629
32 O5 4.1037 2.1259 3.6703 O.2 1 LGD -0.5647
33 C22 7.9239 -0.6703 -2.3460 C.3 1 LGD 0.0965
34 N7 7.2279 -1.4386 -3.3948 N.4 1 LGD -0.8206
35 C23 -0.6861 -4.0115 1.7811 C.3 1 LGD 0.0607
36 C24 -1.1409 -5.4879 1.9661 C.3 1 LGD -0.0443
37 C25 0.6498 -0.8989 1.2115 C.3 1 LGD -0.0937
38 C26 0.4035 -0.5188 2.6999 C.3 1 LGD -0.0648
39 C27 -0.5337 0.7107 2.7791 C.3 1 LGD -0.0904
40 C28 1.6952 -0.2719 3.5084 C.3 1 LGD -0.0904
41 C29 -2.2849 -5.8536 1.0204 C.ar 1 LGD -0.0943
42 C30 -2.0155 -6.3697 -0.2616 C.ar 1 LGD -0.1229
43 C31 -3.0669 -6.6370 -1.1530 C.ar 1 LGD -0.1242
44 C32 -4.3944 -6.3919 -0.7687 C.ar 1 LGD -0.1320
45 C33 -4.6707 -5.8912 0.5127 C.ar 1 LGD -0.1242
46 C34 -3.6203 -5.6301 1.4060 C.ar 1 LGD -0.1229
47 N8 -5.2823 -0.9406 2.1212 N.am 1 LGD -0.5939
48 C35 -6.4006 -1.2408 1.2119 C.3 1 LGD 0.0707
49 C36 -7.1880 0.0581 0.8426 C.3 1 LGD -0.0725
50 C37 -6.3308 1.1420 0.1329 C.3 1 LGD -0.0897
51 C38 -7.8820 0.6567 2.0927 C.3 1 LGD -0.0897
52 C39 -5.8777 -2.0107 -0.0169 C.2 1 LGD 0.6583
53 O6 -6.3994 -3.0519 -0.3779 O.2 1 LGD -0.6087
54 N9 -4.7620 -1.5276 -0.6914 N.am 1 LGD -0.5865
55 C40 -4.0844 -2.2787 -1.7644 C.3 1 LGD 0.0751
56 C41 -4.8954 -2.2116 -3.0899 C.3 1 LGD -0.0992
57 C42 -4.9922 -0.7973 -3.7215 C.3 1 LGD -0.1165
58 C43 -2.6283 -1.8033 -1.9494 C.2 1 LGD 0.6645
59 O7 -1.7409 -2.5991 -2.2072 O.2 1 LGD -0.5625
60 N10 -2.3161 -0.4532 -1.8050 N.am 1 LGD -0.5926
61 C44 -0.9651 0.0827 -2.0659 C.3 1 LGD 0.0678
62 C45 -0.7212 1.3930 -1.2786 C.2 1 LGD 0.6610
63 O8 -1.6310 1.9940 -0.7302 O.2 1 LGD -0.6137
64 N11 0.5791 1.8784 -1.1809 N.am 1 LGD -0.5760
65 C46 -4.6539 -1.9277 2.8658 C.2 1 LGD 0.6629
66 O9 -5.1793 -3.0209 2.9944 O.2 1 LGD -0.5647
67 C47 -6.0849 -0.7189 -4.8104 C.3 1 LGD 0.0965
68 N12 -5.7955 -1.6769 -5.8942 N.4 1 LGD -0.8206
69 C48 0.9382 3.1503 -0.5168 C.3 1 LGD 0.0607
70 C49 1.7885 4.0212 -1.4797 C.3 1 LGD -0.0443
71 C50 -0.8101 0.2762 -3.6056 C.3 1 LGD -0.0937
72 C51 0.6439 0.4942 -4.1202 C.3 1 LGD -0.0648
73 C52 0.6415 0.6645 -5.6586 C.3 1 LGD -0.0904
74 C53 1.6014 -0.6531 -3.7039 C.3 1 LGD -0.0904
75 C54 1.2074 4.1653 -2.8862 C.ar 1 LGD -0.0943
76 C55 2.0534 4.0302 -4.0043 C.ar 1 LGD -0.1229
77 C56 1.5377 4.1467 -5.3046 C.ar 1 LGD -0.1242
78 C57 0.1722 4.4034 -5.4977 C.ar 1 LGD -0.1320
79 C58 -0.6764 4.5469 -4.3893 C.ar 1 LGD -0.1242
80 C59 -0.1613 4.4330 -3.0880 C.ar 1 LGD -0.1229
81 C60 -1.8859 -3.0326 1.9261 C.2 1 LGD 0.6753
82 O10 -2.4047 -2.5313 0.9452 O.2 1 LGD -0.5987
83 H1 -2.9203 -0.6926 2.9631 H 1 LGD 0.0742
84 H2 -2.7372 -0.4531 5.2208 H 1 LGD 0.0673
85 H3 -4.3441 -1.2017 5.3492 H 1 LGD 0.0673
86 H4 -2.0246 -2.3117 6.4683 H 1 LGD 0.0677
87 H5 -3.4306 -3.2777 5.9630 H 1 LGD 0.0677
88 H6 -0.7708 -3.0174 4.6118 H 1 LGD 0.0495
89 H7 -1.9869 -4.3311 4.5239 H 1 LGD 0.0495
90 H8 1.6820 2.7647 3.6846 H 1 LGD 0.0742
91 H9 1.8653 4.6931 5.0251 H 1 LGD 0.0673
92 H10 2.9094 5.5286 3.8506 H 1 LGD 0.0673
93 H11 0.8916 6.6343 3.2960 H 1 LGD 0.0677
94 H12 -0.0958 5.2465 3.8134 H 1 LGD 0.0677
95 H13 -0.2406 4.7428 1.5645 H 1 LGD 0.0495
96 H14 1.2129 5.7114 1.1522 H 1 LGD 0.0495
97 H15 4.2489 4.7620 1.9757 H 1 LGD 0.3164
98 H16 6.3040 4.1893 1.2113 H 1 LGD 0.1001
99 H17 6.5778 1.9970 3.3289 H 1 LGD 0.0664
100 H18 7.9069 3.6878 4.6280 H 1 LGD 0.0403
101 H19 7.4102 4.9526 3.4827 H 1 LGD 0.0403
102 H20 6.2027 4.1443 4.5078 H 1 LGD 0.0403
103 H21 8.1673 1.7648 1.4322 H 1 LGD 0.0403
104 H22 8.6658 3.4605 1.6204 H 1 LGD 0.0403
105 H23 9.0136 2.2776 2.8994 H 1 LGD 0.0403
106 H24 5.5310 0.7103 2.0412 H 1 LGD 0.3375
107 H25 4.2592 0.3917 -0.6094 H 1 LGD 0.1030
108 H26 6.6879 -1.3277 0.1529 H 1 LGD 0.0522
109 H27 5.5987 -1.6301 -1.1979 H 1 LGD 0.0522
110 H28 6.2448 0.6857 -2.1429 H 1 LGD 0.0905
111 H29 7.4426 0.8064 -0.8560 H 1 LGD 0.0905
112 H30 2.7393 -1.3142 -0.7229 H 1 LGD 0.3141
113 H31 1.9245 -2.5660 1.8868 H 1 LGD 0.1017
114 H32 -0.4950 -4.5135 -0.2864 H 1 LGD 0.3354
115 H33 8.6014 0.0424 -2.8215 H 1 LGD 0.1134
116 H34 8.5089 -1.3460 -1.7185 H 1 LGD 0.1134
117 H35 6.6066 -2.1113 -2.9684 H 1 LGD 0.4592
118 H36 7.9038 -1.9240 -3.9684 H 1 LGD 0.4592
119 H37 0.0677 -3.7665 2.5388 H 1 LGD 0.0879
120 H38 -0.2844 -6.1533 1.7963 H 1 LGD 0.0680
121 H39 -1.4465 -5.6700 3.0009 H 1 LGD 0.0680
122 H40 0.9858 -0.0156 0.6680 H 1 LGD 0.0510
123 H41 -0.3145 -1.1260 0.7477 H 1 LGD 0.0510
124 H42 -0.1055 -1.3541 3.1832 H 1 LGD 0.0459
125 H43 -0.0104 1.6247 2.4827 H 1 LGD 0.0375
126 H44 -1.3933 0.5957 2.1081 H 1 LGD 0.0375
127 H45 -0.9097 0.8493 3.8004 H 1 LGD 0.0375
128 H46 1.4731 0.2158 4.4659 H 1 LGD 0.0375
129 H47 2.2027 -1.2173 3.7341 H 1 LGD 0.0375
130 H48 2.3850 0.3677 2.9514 H 1 LGD 0.0375
131 H49 -0.9907 -6.5523 -0.5728 H 1 LGD 0.1373
132 H50 -2.8518 -7.0282 -2.1432 H 1 LGD 0.1374
133 H51 -5.2073 -6.5915 -1.4609 H 1 LGD 0.1322
134 H52 -5.6973 -5.6993 0.8120 H 1 LGD 0.1374
135 H53 -3.8432 -5.2366 2.3932 H 1 LGD 0.1373
136 H54 -4.8703 -0.0197 2.0965 H 1 LGD 0.3164
137 H55 -7.0984 -1.9157 1.7250 H 1 LGD 0.1001
138 H56 -7.9854 -0.2335 0.1463 H 1 LGD 0.0664
139 H57 -6.0066 0.8055 -0.8578 H 1 LGD 0.0403
140 H58 -6.9160 2.0583 -0.0159 H 1 LGD 0.0403
141 H59 -5.4416 1.4037 0.7199 H 1 LGD 0.0403
142 H60 -8.5378 1.4903 1.8108 H 1 LGD 0.0403
143 H61 -8.4984 -0.0985 2.5967 H 1 LGD 0.0403
144 H62 -7.1456 1.0343 2.8136 H 1 LGD 0.0403
145 H63 -4.3250 -0.6910 -0.3353 H 1 LGD 0.3375
146 H64 -4.0236 -3.3311 -1.4556 H 1 LGD 0.1030
147 H65 -4.4332 -2.8951 -3.8136 H 1 LGD 0.0522
148 H66 -5.9074 -2.5971 -2.9134 H 1 LGD 0.0522
149 H67 -5.2255 -0.0564 -2.9479 H 1 LGD 0.0905
150 H68 -4.0234 -0.5133 -4.1520 H 1 LGD 0.0905
151 H69 -3.0490 0.1932 -1.5530 H 1 LGD 0.3141
152 H70 -0.2289 -0.6469 -1.7089 H 1 LGD 0.1017
153 H71 1.3184 1.3420 -1.6099 H 1 LGD 0.3354
154 H72 -7.0571 -0.9552 -4.3722 H 1 LGD 0.1134
155 H73 -6.1234 0.2914 -5.2232 H 1 LGD 0.1134
156 H74 -5.7672 -2.6141 -5.5171 H 1 LGD 0.4592
157 H75 -6.5178 -1.6249 -6.5992 H 1 LGD 0.4592
158 H76 0.0268 3.6980 -0.2571 H 1 LGD 0.0879
159 H77 1.9258 5.0164 -1.0392 H 1 LGD 0.0680
160 H78 2.7925 3.5814 -1.5454 H 1 LGD 0.0680
161 H79 -1.2176 -0.6055 -4.1176 H 1 LGD 0.0510
162 H80 -1.4357 1.1229 -3.9180 H 1 LGD 0.0510
163 H81 1.0324 1.4274 -3.7008 H 1 LGD 0.0459
164 H82 0.2997 -0.2523 -6.1558 H 1 LGD 0.0375
165 H83 -0.0246 1.4832 -5.9587 H 1 LGD 0.0375
166 H84 1.6483 0.8995 -6.0265 H 1 LGD 0.0375
167 H85 1.1849 -1.6311 -3.9779 H 1 LGD 0.0375
168 H86 2.5745 -0.5467 -4.1996 H 1 LGD 0.0375
169 H87 1.7843 -0.6471 -2.6226 H 1 LGD 0.0375
170 H88 3.1122 3.8282 -3.8675 H 1 LGD 0.1373
171 H89 2.1963 4.0363 -6.1614 H 1 LGD 0.1374
172 H90 -0.2267 4.4930 -6.5040 H 1 LGD 0.1322
173 H91 -1.7329 4.7497 -4.5383 H 1 LGD 0.1374
174 H92 -0.8297 4.5519 -2.2403 H 1 LGD 0.1373
175 H93 6.6904 -0.8099 -3.9753 H 1 LGD 0.4592
176 H94 -4.9022 -1.4603 -6.3133 H 1 LGD 0.4592
@BOND
1 28 30 am
2 13 14 1
3 41 42 ar
4 42 43 ar
5 43 44 ar
6 44 45 ar
7 45 46 ar
8 41 46 ar
9 14 15 1
10 15 16 1
11 15 17 1
12 14 18 1
13 18 19 2
14 18 20 am
15 20 21 1
16 21 22 1
17 22 23 1
18 21 24 1
19 24 25 2
20 24 26 am
21 26 27 1
22 8 9 1
23 13 31 am
24 9 10 1
25 31 32 2
26 6 10 1
27 61 62 1
28 62 63 2
29 62 64 am
30 47 48 1
31 48 49 1
32 49 50 1
33 49 51 1
34 48 52 1
35 52 53 2
36 52 54 am
37 54 55 1
38 55 56 1
39 56 57 1
40 55 58 1
41 58 59 2
42 58 60 am
43 60 61 1
44 23 33 1
45 47 65 am
46 1 5 1
47 65 66 2
48 33 34 1
49 57 67 1
50 67 68 1
51 30 35 1
52 64 69 1
53 11 12 2
54 69 70 1
55 35 36 1
56 61 71 1
57 1 2 1
58 71 72 1
59 27 37 1
60 72 73 1
61 2 3 1
62 72 74 1
63 37 38 1
64 70 75 1
65 3 4 1
66 38 39 1
67 4 5 1
68 38 40 1
69 6 7 1
70 75 76 ar
71 76 77 ar
72 77 78 ar
73 78 79 ar
74 79 80 ar
75 75 80 ar
76 36 41 1
77 7 8 1
78 81 82 2
79 11 69 1
80 35 81 1
81 6 31 1
82 10 11 am
83 1 65 1
84 5 81 am
85 27 28 1
86 28 29 2
87 1 83 1
88 2 84 1
89 2 85 1
90 3 86 1
91 3 87 1
92 4 88 1
93 4 89 1
94 6 90 1
95 7 91 1
96 7 92 1
97 8 93 1
98 8 94 1
99 9 95 1
100 9 96 1
101 13 97 1
102 14 98 1
103 15 99 1
104 16 100 1
105 16 101 1
106 16 102 1
107 17 103 1
108 17 104 1
109 17 105 1
110 20 106 1
111 21 107 1
112 22 108 1
113 22 109 1
114 23 110 1
115 23 111 1
116 26 112 1
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179 34 175 1
180 68 176 1