@COMMENT
LIGANDBOX_ID = D02230-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02230
NAME = Gramicidin_S_hydrochloride_(JAN)_Gramicidin_S_dihydrochloride
MOLECULAR_FORMULA = C60H92N12O10
MOLECULAR_WEIGHT = 1141.470
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 12
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 10
TPSA = 325.4600
HOMO = -11.7203
LUMO = -5.1043
mLOGPA = -6.120
mLOGD = -0.419
mLOGS = 1.546
@MOLECULE
D02230-04
176 180 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -2.3358 2.7781 -0.9319 C.3 1 LGD 0.0499
2 C2 -2.3909 4.1824 -0.3012 C.3 1 LGD -0.0842
3 C3 -3.5326 4.1067 0.7263 C.3 1 LGD -0.0944
4 C4 -3.6654 2.6132 1.0790 C.3 1 LGD 0.1005
5 N1 -2.9451 1.8580 0.0416 N.am 1 LGD -0.5069
6 C5 -0.2820 3.0555 3.2355 C.3 1 LGD 0.0499
7 C6 -0.0278 4.5694 3.3964 C.3 1 LGD -0.0842
8 C7 1.2656 4.8505 2.6157 C.3 1 LGD -0.0944
9 C8 1.3581 3.7200 1.5784 C.3 1 LGD 0.1005
10 N2 0.5353 2.6107 2.0871 N.am 1 LGD -0.5069
11 C9 0.4105 1.3465 1.5134 C.2 1 LGD 0.6750
12 O1 -0.4258 0.5554 1.9074 O.2 1 LGD -0.5884
13 N3 1.4188 2.1627 4.8658 N.am 1 LGD -0.6122
14 C10 1.9126 1.5414 6.1150 C.3 1 LGD 0.0750
15 C11 1.6786 2.4922 7.3404 C.3 1 LGD -0.0740
16 C12 2.1359 3.9471 7.0426 C.3 1 LGD -0.0907
17 C13 2.4284 1.9836 8.6035 C.3 1 LGD -0.0907
18 C14 1.3970 0.0868 6.3349 C.2 1 LGD 0.6545
19 O2 0.5885 -0.1889 7.2031 O.2 1 LGD -0.5407
20 N4 1.8809 -0.9980 5.6138 N.am 1 LGD -0.6101
21 C15 2.2717 -0.9411 4.1952 C.3 1 LGD 0.0615
22 C16 3.8137 -1.1254 4.0170 C.3 1 LGD -0.0950
23 C17 4.6420 0.1158 4.4355 C.3 1 LGD -0.1162
24 C18 1.4452 -1.9881 3.4082 C.2 1 LGD 0.6473
25 O3 1.9555 -2.7837 2.6366 O.2 1 LGD -0.5763
26 N5 0.0679 -2.0012 3.5804 N.am 1 LGD -0.5789
27 C19 -0.8510 -2.6433 2.6225 C.3 1 LGD 0.0675
28 C20 -2.1493 -1.8259 2.5554 C.2 1 LGD 0.6664
29 O4 -2.6817 -1.3741 3.5562 O.2 1 LGD -0.5943
30 N6 -2.6840 -1.5565 1.3048 N.am 1 LGD -0.5783
31 C21 0.0811 2.2574 4.5026 C.2 1 LGD 0.6456
32 O5 -0.7764 1.7101 5.1720 O.2 1 LGD -0.5388
33 C22 6.0315 0.1637 3.7625 C.3 1 LGD 0.0983
34 N7 5.9235 0.8034 2.4361 N.4 1 LGD -0.8258
35 C23 -3.5141 -0.3689 1.0535 C.3 1 LGD 0.0682
36 C24 -4.9730 -0.7735 0.7237 C.3 1 LGD -0.0445
37 C25 -1.1090 -4.1297 2.9931 C.3 1 LGD -0.0809
38 C26 -2.1171 -4.8653 2.0550 C.3 1 LGD -0.0685
39 C27 -2.3708 -6.3056 2.5606 C.3 1 LGD -0.0895
40 C28 -1.6512 -4.8952 0.5756 C.3 1 LGD -0.0895
41 C29 -5.1163 -1.4787 -0.6220 C.ar 1 LGD -0.1106
42 C30 -4.8566 -2.8571 -0.7392 C.ar 1 LGD -0.1330
43 C31 -4.9904 -3.4993 -1.9807 C.ar 1 LGD -0.1234
44 C32 -5.3863 -2.7681 -3.1118 C.ar 1 LGD -0.1279
45 C33 -5.6493 -1.3941 -3.0004 C.ar 1 LGD -0.1234
46 C34 -5.5157 -0.7524 -1.7597 C.ar 1 LGD -0.1330
47 N8 -2.3962 2.9583 -3.4358 N.am 1 LGD -0.6122
48 C35 -3.0084 2.8101 -4.7699 C.3 1 LGD 0.0750
49 C36 -2.1463 3.5382 -5.8486 C.3 1 LGD -0.0740
50 C37 -0.6804 3.0316 -5.9265 C.3 1 LGD -0.0907
51 C38 -2.1766 5.0729 -5.6353 C.3 1 LGD -0.0907
52 C39 -3.2451 1.3218 -5.0964 C.2 1 LGD 0.6545
53 O6 -4.2807 0.9369 -5.6120 O.2 1 LGD -0.5407
54 N9 -2.2652 0.4027 -4.7532 N.am 1 LGD -0.6101
55 C40 -2.4400 -1.0553 -4.8753 C.3 1 LGD 0.0615
56 C41 -2.0874 -1.5404 -6.3117 C.3 1 LGD -0.0950
57 C42 -0.6004 -1.3506 -6.7221 C.3 1 LGD -0.1162
58 C43 -1.6062 -1.7499 -3.7892 C.2 1 LGD 0.6473
59 O7 -2.0479 -2.6737 -3.1279 O.2 1 LGD -0.5763
60 N10 -0.3285 -1.2688 -3.5466 N.am 1 LGD -0.5789
61 C44 0.4554 -1.6227 -2.3596 C.3 1 LGD 0.0675
62 C45 0.9865 -0.3273 -1.7246 C.2 1 LGD 0.6664
63 O8 1.4369 0.5866 -2.3971 O.2 1 LGD -0.5943
64 N11 0.9060 -0.1991 -0.3479 N.am 1 LGD -0.5783
65 C46 -3.1015 2.7209 -2.2668 C.2 1 LGD 0.6456
66 O9 -4.2911 2.4562 -2.3277 O.2 1 LGD -0.5388
67 C47 -0.3581 -1.6512 -8.2163 C.3 1 LGD 0.0983
68 N12 -0.6084 -3.0787 -8.4903 N.4 1 LGD -0.8258
69 C48 1.4065 0.9720 0.3921 C.3 1 LGD 0.0682
70 C49 2.7867 0.6093 0.9953 C.3 1 LGD -0.0445
71 C50 1.5927 -2.5936 -2.7776 C.3 1 LGD -0.0809
72 C51 2.4872 -3.0795 -1.6026 C.3 1 LGD -0.0685
73 C52 3.7219 -3.8454 -2.1350 C.3 1 LGD -0.0895
74 C53 1.7068 -3.9480 -0.5880 C.3 1 LGD -0.0895
75 C54 3.9208 0.4745 -0.0147 C.ar 1 LGD -0.1106
76 C55 4.7118 -0.6915 -0.0319 C.ar 1 LGD -0.1330
77 C56 5.7839 -0.8106 -0.9284 C.ar 1 LGD -0.1234
78 C57 6.0780 0.2379 -1.8120 C.ar 1 LGD -0.1279
79 C58 5.3001 1.4059 -1.7959 C.ar 1 LGD -0.1234
80 C59 4.2282 1.5268 -0.8970 C.ar 1 LGD -0.1330
81 C60 -2.8660 0.4700 -0.0725 C.2 1 LGD 0.6750
82 O10 -2.2605 -0.0598 -0.9911 O.2 1 LGD -0.5884
83 H1 -1.2928 2.4879 -1.1145 H 1 LGD 0.0838
84 H2 -1.4467 4.3879 0.2187 H 1 LGD 0.0666
85 H3 -2.5535 4.9729 -1.0454 H 1 LGD 0.0666
86 H4 -3.3274 4.7181 1.6143 H 1 LGD 0.0646
87 H5 -4.4651 4.4612 0.2687 H 1 LGD 0.0646
88 H6 -3.2078 2.4153 2.0552 H 1 LGD 0.0480
89 H7 -4.7211 2.3160 1.1031 H 1 LGD 0.0480
90 H8 -1.3425 2.8820 3.0204 H 1 LGD 0.0838
91 H9 -0.8560 5.1265 2.9398 H 1 LGD 0.0666
92 H10 0.0461 4.8757 4.4473 H 1 LGD 0.0666
93 H11 2.1250 4.7981 3.2967 H 1 LGD 0.0646
94 H12 1.2576 5.8407 2.1428 H 1 LGD 0.0646
95 H13 0.9468 4.0558 0.6181 H 1 LGD 0.0480
96 H14 2.4008 3.4123 1.4403 H 1 LGD 0.0480
97 H15 2.0896 2.6217 4.2682 H 1 LGD 0.3031
98 H16 2.9977 1.4541 6.0194 H 1 LGD 0.0762
99 H17 0.6046 2.5198 7.5670 H 1 LGD 0.0819
100 H18 2.0541 4.5731 7.9404 H 1 LGD 0.0394
101 H19 3.1811 3.9694 6.7080 H 1 LGD 0.0394
102 H20 1.5164 4.4117 6.2670 H 1 LGD 0.0394
103 H21 2.0699 0.9987 8.9240 H 1 LGD 0.0394
104 H22 3.5067 1.9063 8.4137 H 1 LGD 0.0394
105 H23 2.2825 2.6719 9.4457 H 1 LGD 0.0394
106 H24 1.6684 -1.9097 5.9927 H 1 LGD 0.3288
107 H25 1.9810 0.0225 3.7674 H 1 LGD 0.1020
108 H26 4.1517 -2.0039 4.5819 H 1 LGD 0.0606
109 H27 4.0373 -1.3421 2.9671 H 1 LGD 0.0606
110 H28 4.1013 1.0377 4.1885 H 1 LGD 0.0810
111 H29 4.7752 0.0988 5.5246 H 1 LGD 0.0810
112 H30 -0.3315 -1.3907 4.2805 H 1 LGD 0.3297
113 H31 -0.3974 -2.5987 1.6256 H 1 LGD 0.0789
114 H32 -2.2948 -2.0324 0.5039 H 1 LGD 0.3316
115 H33 6.7160 0.7521 4.3769 H 1 LGD 0.1137
116 H34 6.4330 -0.8464 3.6563 H 1 LGD 0.1137
117 H35 5.2743 0.2928 1.8538 H 1 LGD 0.4601
118 H36 6.8280 0.8168 1.9853 H 1 LGD 0.4601
119 H37 -3.5329 0.2406 1.9633 H 1 LGD 0.0954
120 H38 -5.3580 -1.4156 1.5264 H 1 LGD 0.0567
121 H39 -5.6008 0.1262 0.7358 H 1 LGD 0.0567
122 H40 -0.1536 -4.6704 2.9896 H 1 LGD 0.0566
123 H41 -1.4862 -4.1731 4.0234 H 1 LGD 0.0566
124 H42 -3.0789 -4.3382 2.0948 H 1 LGD 0.0475
125 H43 -1.4469 -6.8978 2.5404 H 1 LGD 0.0380
126 H44 -2.7496 -6.2965 3.5904 H 1 LGD 0.0380
127 H45 -3.1153 -6.8128 1.9337 H 1 LGD 0.0380
128 H46 -2.3701 -5.4450 -0.0452 H 1 LGD 0.0380
129 H47 -1.5660 -3.8860 0.1559 H 1 LGD 0.0380
130 H48 -0.6772 -5.3914 0.4844 H 1 LGD 0.0380
131 H49 -4.5531 -3.4311 0.1314 H 1 LGD 0.1426
132 H50 -4.7849 -4.5623 -2.0665 H 1 LGD 0.1443
133 H51 -5.4870 -3.2646 -4.0726 H 1 LGD 0.1374
134 H52 -5.9546 -0.8255 -3.8744 H 1 LGD 0.1443
135 H53 -5.7243 0.3104 -1.6826 H 1 LGD 0.1426
136 H54 -1.4201 3.2067 -3.3709 H 1 LGD 0.3031
137 H55 -3.9992 3.2832 -4.7562 H 1 LGD 0.0762
138 H56 -2.6119 3.3429 -6.8235 H 1 LGD 0.0819
139 H57 -0.6419 1.9782 -6.2232 H 1 LGD 0.0394
140 H58 -0.1167 3.6005 -6.6767 H 1 LGD 0.0394
141 H59 -0.1624 3.1403 -4.9654 H 1 LGD 0.0394
142 H60 -1.6599 5.5889 -6.4545 H 1 LGD 0.0394
143 H61 -3.2098 5.4416 -5.6059 H 1 LGD 0.0394
144 H62 -1.6862 5.3539 -4.6945 H 1 LGD 0.0394
145 H63 -1.4391 0.7536 -4.2922 H 1 LGD 0.3288
146 H64 -3.4885 -1.3066 -4.6754 H 1 LGD 0.1020
147 H65 -2.3482 -2.6034 -6.3909 H 1 LGD 0.0606
148 H66 -2.7287 -1.0125 -7.0295 H 1 LGD 0.0606
149 H67 -0.2893 -0.3186 -6.5235 H 1 LGD 0.0810
150 H68 0.0458 -2.0003 -6.1184 H 1 LGD 0.0810
151 H69 0.0327 -0.5463 -4.1513 H 1 LGD 0.3297
152 H70 -0.1907 -2.1116 -1.6201 H 1 LGD 0.0789
153 H71 0.4623 -0.9401 0.1750 H 1 LGD 0.3316
154 H72 -1.0225 -1.0396 -8.8306 H 1 LGD 0.1137
155 H73 0.6761 -1.4144 -8.4752 H 1 LGD 0.1137
156 H74 -1.5658 -3.3055 -8.2602 H 1 LGD 0.4601
157 H75 -0.4460 -3.2732 -9.4686 H 1 LGD 0.4601
158 H76 1.4972 1.8367 -0.2755 H 1 LGD 0.0954
159 H77 3.0729 1.3450 1.7553 H 1 LGD 0.0567
160 H78 2.6645 -0.3381 1.5245 H 1 LGD 0.0567
161 H79 1.1535 -3.4666 -3.2785 H 1 LGD 0.0566
162 H80 2.2226 -2.0927 -3.5248 H 1 LGD 0.0566
163 H81 2.8565 -2.1995 -1.0691 H 1 LGD 0.0475
164 H82 3.4193 -4.7492 -2.6793 H 1 LGD 0.0380
165 H83 4.3079 -3.2149 -2.8158 H 1 LGD 0.0380
166 H84 4.3792 -4.1465 -1.3093 H 1 LGD 0.0380
167 H85 1.2397 -4.8082 -1.0838 H 1 LGD 0.0380
168 H86 2.3755 -4.3272 0.1951 H 1 LGD 0.0380
169 H87 0.9221 -3.3641 -0.0948 H 1 LGD 0.0380
170 H88 4.4944 -1.5137 0.6442 H 1 LGD 0.1426
171 H89 6.3846 -1.7158 -0.9393 H 1 LGD 0.1443
172 H90 6.9075 0.1459 -2.5074 H 1 LGD 0.1374
173 H91 5.5292 2.2189 -2.4789 H 1 LGD 0.1443
174 H92 3.6402 2.4399 -0.8885 H 1 LGD 0.1426
175 H93 5.5971 1.7539 2.5413 H 1 LGD 0.4601
176 H94 0.0113 -3.6474 -7.9304 H 1 LGD 0.4601
@BOND
1 28 30 am
2 13 14 1
3 41 42 ar
4 42 43 ar
5 43 44 ar
6 44 45 ar
7 45 46 ar
8 41 46 ar
9 14 15 1
10 15 16 1
11 15 17 1
12 14 18 1
13 18 19 2
14 18 20 am
15 20 21 1
16 21 22 1
17 22 23 1
18 21 24 1
19 24 25 2
20 24 26 am
21 26 27 1
22 8 9 1
23 13 31 am
24 9 10 1
25 31 32 2
26 6 10 1
27 61 62 1
28 62 63 2
29 62 64 am
30 47 48 1
31 48 49 1
32 49 50 1
33 49 51 1
34 48 52 1
35 52 53 2
36 52 54 am
37 54 55 1
38 55 56 1
39 56 57 1
40 55 58 1
41 58 59 2
42 58 60 am
43 60 61 1
44 23 33 1
45 47 65 am
46 1 5 1
47 65 66 2
48 33 34 1
49 57 67 1
50 67 68 1
51 30 35 1
52 64 69 1
53 11 12 2
54 69 70 1
55 35 36 1
56 61 71 1
57 1 2 1
58 71 72 1
59 27 37 1
60 72 73 1
61 2 3 1
62 72 74 1
63 37 38 1
64 70 75 1
65 3 4 1
66 38 39 1
67 4 5 1
68 38 40 1
69 6 7 1
70 75 76 ar
71 76 77 ar
72 77 78 ar
73 78 79 ar
74 79 80 ar
75 75 80 ar
76 36 41 1
77 7 8 1
78 81 82 2
79 11 69 1
80 35 81 1
81 6 31 1
82 10 11 am
83 1 65 1
84 5 81 am
85 27 28 1
86 28 29 2
87 1 83 1
88 2 84 1
89 2 85 1
90 3 86 1
91 3 87 1
92 4 88 1
93 4 89 1
94 6 90 1
95 7 91 1
96 7 92 1
97 8 93 1
98 8 94 1
99 9 95 1
100 9 96 1
101 13 97 1
102 14 98 1
103 15 99 1
104 16 100 1
105 16 101 1
106 16 102 1
107 17 103 1
108 17 104 1
109 17 105 1
110 20 106 1
111 21 107 1
112 22 108 1
113 22 109 1
114 23 110 1
115 23 111 1
116 26 112 1
117 27 113 1
118 30 114 1
119 33 115 1
120 33 116 1
121 34 117 1
122 34 118 1
123 35 119 1
124 36 120 1
125 36 121 1
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132 40 128 1
133 40 129 1
134 40 130 1
135 42 131 1
136 43 132 1
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138 45 134 1
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140 47 136 1
141 48 137 1
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143 50 139 1
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145 50 141 1
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149 54 145 1
150 55 146 1
151 56 147 1
152 56 148 1
153 57 149 1
154 57 150 1
155 60 151 1
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157 64 153 1
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159 67 155 1
160 68 156 1
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164 70 160 1
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177 79 173 1
178 80 174 1
179 34 175 1
180 68 176 1