@COMMENT
LIGANDBOX_ID = D02368-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02368
NAME = Gemcitabine_(USAN/INN)
MOLECULAR_FORMULA = C9H11N3O4F2
MOLECULAR_WEIGHT = 263.200
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 5
NUM_OF_CHIRAL_ATOMS = 3
TPSA = 108.3800
HOMO = -9.6263
LUMO = -0.4266
mLOGD = 0.454
mLOGPA = -5.878
mLOGS = -1.491
@MOLECULE
D02368-03
29 30 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.0039 0.2749 -0.9096 C.3 1 LGD 0.2642
2 N1 1.0182 0.5216 0.1507 N.am 1 LGD -0.3892
3 C2 -0.0062 -1.1681 -1.4906 C.3 1 LGD 0.3708
4 O1 -1.3348 0.4926 -0.4332 O.3 1 LGD -0.3898
5 C3 0.7821 0.2163 1.4950 C.2 1 LGD 0.8732
6 C4 2.2175 1.1042 -0.2368 C.2 1 LGD 0.0637
7 C5 -1.5102 -1.5555 -1.5704 C.3 1 LGD 0.0850
8 F1 0.5443 -1.1673 -2.7253 F 1 LGD -0.2106
9 F2 0.7057 -2.0311 -0.7250 F 1 LGD -0.2106
10 C6 -2.2184 -0.1928 -1.3298 C.3 1 LGD 0.0506
11 N2 1.7840 0.5559 2.3999 N.2 1 LGD -0.7643
12 O2 -0.2339 -0.3341 1.8846 O.2 1 LGD -0.5858
13 C7 3.1853 1.4182 0.6924 C.2 1 LGD -0.3975
14 O3 -1.8515 -2.5268 -0.5743 O.3 1 LGD -0.5741
15 C8 -3.6399 -0.2351 -0.7072 C.3 1 LGD 0.1456
16 C9 2.9286 1.1281 2.0781 C.2 1 LGD 0.7584
17 O4 -3.6012 -0.6721 0.6523 O.3 1 LGD -0.6003
18 N3 3.8439 1.4181 3.0489 N.pl3 1 LGD -0.9102
19 H1 0.1963 0.9866 -1.7216 H 1 LGD 0.0711
20 H2 2.3041 1.2802 -1.3020 H 1 LGD 0.1562
21 H3 -1.7595 -1.9357 -2.5693 H 1 LGD 0.0907
22 H4 -2.2641 0.3505 -2.2829 H 1 LGD 0.0585
23 H5 4.1188 1.8789 0.3902 H 1 LGD 0.1519
24 H6 -2.4665 -2.0967 0.0492 H 1 LGD 0.4457
25 H7 -4.0728 0.7721 -0.7553 H 1 LGD 0.0625
26 H8 -4.2801 -0.8997 -1.3008 H 1 LGD 0.0625
27 H9 -2.8762 -0.1837 1.0858 H 1 LGD 0.4460
28 H10 3.6916 0.9957 3.9520 H 1 LGD 0.4379
29 H11 4.7907 1.6037 2.7563 H 1 LGD 0.4379
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 am
5 2 6 1
6 3 7 1
7 3 8 1
8 3 9 1
9 4 10 1
10 5 11 1
11 5 12 2
12 6 13 2
13 7 14 1
14 10 15 1
15 11 16 2
16 15 17 1
17 16 18 1
18 7 10 1
19 13 16 1
20 1 19 1
21 6 20 1
22 7 21 1
23 10 22 1
24 13 23 1
25 14 24 1
26 15 25 1
27 15 26 1
28 17 27 1
29 18 28 1
30 18 29 1