@COMMENT
LIGANDBOX_ID = D02543-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-02
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.6899 0.7062 -3.8931 C.3 1 LGD 0.1224
2 C2 -0.0701 2.0868 -3.5176 C.3 1 LGD 0.1087
3 C3 0.3927 2.1005 -2.0432 C.3 1 LGD 0.0553
4 C4 1.4110 0.9632 -1.8057 C.3 1 LGD 0.0941
5 C5 0.8211 -0.4115 -2.2118 C.3 1 LGD 0.3140
6 O1 0.2750 -0.3358 -3.5587 O.3 1 LGD -0.3874
7 O2 -0.2057 -0.7865 -1.2718 O.3 1 LGD -0.4789
8 C6 -0.3709 -2.2027 -1.0310 C.3 1 LGD 0.1200
9 C7 0.4109 -2.6060 0.2570 C.3 1 LGD 0.1008
10 C8 -0.1675 -1.9053 1.5139 C.3 1 LGD -0.1202
11 C9 -1.6851 -2.1621 1.6980 C.3 1 LGD 0.0922
12 C10 -2.5086 -1.8545 0.4073 C.3 1 LGD 0.1405
13 C11 -1.8924 -2.4987 -0.8754 C.3 1 LGD 0.1441
14 O3 -2.5702 -0.4254 0.2008 O.3 1 LGD -0.4335
15 C12 -3.3692 0.3284 1.1382 C.3 1 LGD 0.2919
16 C13 -2.0739 0.3949 -3.2492 C.3 1 LGD 0.1078
17 O4 -3.0899 1.2551 -3.7639 O.3 1 LGD -0.6006
18 O5 -0.9837 3.1571 -3.7582 O.3 1 LGD -0.5922
19 N1 1.0101 3.4025 -1.7276 N.4 1 LGD -0.8034
20 O6 1.8118 0.9366 -0.4361 O.3 1 LGD -0.6218
21 N2 1.8451 -2.2996 0.1509 N.am 1 LGD -0.6167
22 C14 2.8132 -3.0255 0.8333 C.2 1 LGD 0.6240
23 C15 4.2860 -2.6096 0.7030 C.3 1 LGD 0.0954
24 C16 4.5537 -1.2311 1.3546 C.3 1 LGD -0.1027
25 C17 6.0547 -0.8727 1.3301 C.3 1 LGD 0.1020
26 N3 6.2608 0.4395 1.9718 N.4 1 LGD -0.8203
27 O7 -2.5248 0.8398 2.1951 O.3 1 LGD -0.4630
28 C18 -1.4591 1.7270 1.7775 C.3 1 LGD 0.1248
29 C19 -2.0884 2.9867 1.1328 C.3 1 LGD 0.1290
30 C20 -3.0206 2.5952 -0.0394 C.3 1 LGD 0.1102
31 C21 -4.0473 1.5225 0.4088 C.3 1 LGD 0.0977
32 C22 -0.6314 2.0868 3.0299 C.3 1 LGD 0.1044
33 N4 -0.0979 0.8578 3.6492 N.4 1 LGD -0.8219
34 O8 -1.0617 3.8604 0.6629 O.3 1 LGD -0.6586
35 O9 -3.7077 3.7514 -0.5157 O.3 1 LGD -0.5746
36 O10 -4.7934 1.0523 -0.7162 O.3 1 LGD -0.5604
37 O11 2.4846 -3.9813 1.5153 O.2 1 LGD -0.5329
38 O12 4.6540 -2.5829 -0.6786 O.3 1 LGD -0.5996
39 N5 -1.8831 -3.5740 2.0778 N.4 1 LGD -0.8203
40 O13 -2.0938 -3.9144 -0.8401 O.3 1 LGD -0.6291
41 H1 -0.8333 0.6920 -4.9812 H 1 LGD 0.1618
42 H2 0.8141 2.2331 -4.1516 H 1 LGD 0.1016
43 H3 -0.4703 1.9525 -1.3920 H 1 LGD 0.1139
44 H4 2.2910 1.1494 -2.4353 H 1 LGD 0.1312
45 H5 1.6236 -1.1583 -2.1965 H 1 LGD 0.1177
46 H6 0.0098 -2.7757 -1.8872 H 1 LGD 0.1152
47 H7 0.2940 -3.6903 0.3822 H 1 LGD 0.1059
48 H8 0.3700 -2.2405 2.4103 H 1 LGD 0.0525
49 H9 0.0087 -0.8275 1.4345 H 1 LGD 0.0525
50 H10 -2.0531 -1.5422 2.5173 H 1 LGD 0.0977
51 H11 -3.5297 -2.2387 0.5304 H 1 LGD 0.0962
52 H12 -2.4186 -2.0907 -1.7467 H 1 LGD 0.1065
53 H13 -4.1458 -0.3159 1.5682 H 1 LGD 0.1229
54 H14 -2.3362 -0.6483 -3.4626 H 1 LGD 0.0337
55 H15 -2.0185 0.5159 -2.1637 H 1 LGD 0.0337
56 H16 -3.9219 1.0387 -3.3053 H 1 LGD 0.4499
57 H17 -1.8262 2.7567 -4.0469 H 1 LGD 0.4816
58 H18 1.2831 3.4193 -0.7548 H 1 LGD 0.4695
59 H19 0.3383 4.1369 -1.9044 H 1 LGD 0.4695
60 H20 1.1099 0.4613 0.0440 H 1 LGD 0.4123
61 H21 2.1424 -1.5196 -0.4164 H 1 LGD 0.3218
62 H22 4.8836 -3.3661 1.2288 H 1 LGD 0.1150
63 H23 3.9780 -0.4538 0.8362 H 1 LGD 0.0532
64 H24 4.2041 -1.2502 2.3950 H 1 LGD 0.0532
65 H25 6.6258 -1.6333 1.8676 H 1 LGD 0.1421
66 H26 6.4086 -0.8331 0.2973 H 1 LGD 0.1421
67 H27 5.9404 0.4064 2.9296 H 1 LGD 0.4649
68 H28 5.7445 1.1493 1.4713 H 1 LGD 0.4649
69 H29 -0.8115 1.2293 1.0451 H 1 LGD 0.0462
70 H30 -2.6876 3.5016 1.8957 H 1 LGD 0.1065
71 H31 -2.4076 2.1775 -0.8456 H 1 LGD 0.0332
72 H32 -4.7361 1.9915 1.1239 H 1 LGD 0.1296
73 H33 0.1932 2.7468 2.7521 H 1 LGD 0.1432
74 H34 -1.2686 2.6052 3.7498 H 1 LGD 0.1432
75 H35 0.5212 0.3881 3.0048 H 1 LGD 0.4607
76 H36 0.4074 1.0900 4.4934 H 1 LGD 0.4607
77 H37 -1.5173 4.6147 0.2455 H 1 LGD 0.4790
78 H38 -4.4409 3.4374 -1.0754 H 1 LGD 0.4678
79 H39 -4.6697 0.0876 -0.7634 H 1 LGD 0.4192
80 H40 4.6026 -3.4947 -1.0184 H 1 LGD 0.4655
81 H41 -2.8501 -3.7338 2.3228 H 1 LGD 0.4801
82 H42 -1.6463 -4.1664 1.2918 H 1 LGD 0.4801
83 H43 -2.1019 -4.2378 -1.7597 H 1 LGD 0.4856
84 H44 1.8213 3.5500 -2.3107 H 1 LGD 0.4695
85 H45 7.2439 0.6753 1.9605 H 1 LGD 0.4649
86 H46 -0.8686 0.2456 3.8795 H 1 LGD 0.4607
87 H47 -1.2947 -3.8081 2.8651 H 1 LGD 0.4801
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1