@COMMENT
LIGANDBOX_ID = D02543-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-03
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.1563 0.5505 -3.2669 C.3 1 LGD 0.1134
2 C2 -0.5978 2.0005 -3.2283 C.3 1 LGD 0.1039
3 C3 0.3311 2.1520 -1.9951 C.3 1 LGD 0.0880
4 C4 1.4369 1.0655 -2.0007 C.3 1 LGD 0.1011
5 C5 0.8393 -0.3569 -2.1728 C.3 1 LGD 0.3115
6 O1 -0.0395 -0.3712 -3.3214 O.3 1 LGD -0.3751
7 O2 0.0901 -0.7090 -0.9922 O.3 1 LGD -0.4928
8 C6 -0.1842 -2.1209 -0.8396 C.3 1 LGD 0.1192
9 C7 0.4451 -2.5917 0.4959 C.3 1 LGD 0.1133
10 C8 -0.2498 -1.9283 1.7130 C.3 1 LGD -0.1151
11 C9 -1.7838 -2.1573 1.7168 C.3 1 LGD 0.0910
12 C10 -2.4579 -1.7701 0.3608 C.3 1 LGD 0.1402
13 C11 -1.7212 -2.3584 -0.8818 C.3 1 LGD 0.1329
14 O3 -2.4740 -0.3345 0.2228 O.3 1 LGD -0.4404
15 C12 -3.3449 0.3801 1.1257 C.3 1 LGD 0.2931
16 C13 -2.0760 0.2788 -4.4813 C.3 1 LGD 0.1472
17 O4 -2.6427 -1.0276 -4.3927 O.3 1 LGD -0.6172
18 O5 0.1244 2.3082 -4.4266 O.3 1 LGD -0.6049
19 N1 0.9514 3.4906 -1.9912 N.4 1 LGD -0.8091
20 O6 2.1960 1.1343 -0.7933 O.3 1 LGD -0.6026
21 N2 1.8785 -2.2708 0.5006 N.am 1 LGD -0.6141
22 C14 2.8211 -3.0414 1.1652 C.2 1 LGD 0.6216
23 C15 4.2996 -2.6390 1.0663 C.3 1 LGD 0.0951
24 C16 4.5476 -1.2284 1.6544 C.3 1 LGD -0.1011
25 C17 6.0464 -0.8635 1.6527 C.3 1 LGD 0.1021
26 N3 6.2261 0.4747 2.2465 N.4 1 LGD -0.8207
27 O7 -2.5679 0.9165 2.2206 O.3 1 LGD -0.4602
28 C18 -1.5033 1.8249 1.8479 C.3 1 LGD 0.1255
29 C19 -2.1246 3.0569 1.1393 C.3 1 LGD 0.1267
30 C20 -2.9958 2.6217 -0.0656 C.3 1 LGD 0.0928
31 C21 -4.0262 1.5496 0.3684 C.3 1 LGD 0.0949
32 C22 -0.7637 2.2290 3.1408 C.3 1 LGD 0.1043
33 N4 -0.1947 1.0288 3.7842 N.4 1 LGD -0.8204
34 O8 -1.0924 3.9376 0.6952 O.3 1 LGD -0.6532
35 O9 -3.6750 3.7537 -0.6070 O.3 1 LGD -0.5825
36 O10 -4.7274 1.0493 -0.7706 O.3 1 LGD -0.5432
37 O11 2.4671 -4.0181 1.8031 O.2 1 LGD -0.5288
38 O12 4.7121 -2.6819 -0.3025 O.3 1 LGD -0.5970
39 N5 -2.0509 -3.5801 2.0012 N.4 1 LGD -0.8192
40 O13 -1.9721 -3.7640 -0.9566 O.3 1 LGD -0.6305
41 H1 -1.7415 0.3792 -2.3548 H 1 LGD 0.0572
42 H2 -1.4376 2.6987 -3.1194 H 1 LGD 0.0752
43 H3 -0.2638 2.0370 -1.0870 H 1 LGD 0.1054
44 H4 2.1019 1.2507 -2.8544 H 1 LGD 0.1520
45 H5 1.6553 -1.0745 -2.3223 H 1 LGD 0.1278
46 H6 0.2771 -2.6870 -1.6601 H 1 LGD 0.1120
47 H7 0.3170 -3.6797 0.5645 H 1 LGD 0.1055
48 H8 0.1827 -2.3142 2.6451 H 1 LGD 0.0551
49 H9 -0.0489 -0.8508 1.7009 H 1 LGD 0.0551
50 H10 -2.2275 -1.5674 2.5208 H 1 LGD 0.0998
51 H11 -3.4930 -2.1364 0.3543 H 1 LGD 0.0983
52 H12 -2.1257 -1.8776 -1.7812 H 1 LGD 0.1204
53 H13 -4.1174 -0.2932 1.5171 H 1 LGD 0.1269
54 H14 -2.8759 1.0297 -4.5046 H 1 LGD 0.0605
55 H15 -1.4970 0.3717 -5.4089 H 1 LGD 0.0605
56 H16 -3.1008 -1.2072 -5.2332 H 1 LGD 0.4604
57 H17 -0.5015 2.2783 -5.1719 H 1 LGD 0.4745
58 H18 1.6033 3.5575 -1.2221 H 1 LGD 0.4727
59 H19 0.2400 4.2011 -1.8984 H 1 LGD 0.4727
60 H20 1.6364 0.7553 -0.0922 H 1 LGD 0.4036
61 H21 2.1998 -1.4783 -0.0357 H 1 LGD 0.3195
62 H22 4.8761 -3.3696 1.6488 H 1 LGD 0.1138
63 H23 3.9852 -0.4795 1.0815 H 1 LGD 0.0507
64 H24 4.1684 -1.1966 2.6841 H 1 LGD 0.0507
65 H25 6.6072 -1.5983 2.2349 H 1 LGD 0.1425
66 H26 6.4263 -0.8626 0.6283 H 1 LGD 0.1425
67 H27 5.8729 0.4785 3.1933 H 1 LGD 0.4643
68 H28 5.7241 1.1607 1.7002 H 1 LGD 0.4643
69 H29 -0.7981 1.3287 1.1687 H 1 LGD 0.0499
70 H30 -2.7675 3.5794 1.8605 H 1 LGD 0.1052
71 H31 -2.3437 2.1840 -0.8309 H 1 LGD 0.0205
72 H32 -4.7425 2.0192 1.0557 H 1 LGD 0.1443
73 H33 0.0362 2.9344 2.9057 H 1 LGD 0.1428
74 H34 -1.4650 2.7087 3.8272 H 1 LGD 0.1428
75 H35 0.4764 0.5945 3.1674 H 1 LGD 0.4612
76 H36 0.2592 1.2851 4.6503 H 1 LGD 0.4612
77 H37 -1.5420 4.7009 0.2884 H 1 LGD 0.4720
78 H38 -4.4280 3.4140 -1.1243 H 1 LGD 0.4665
79 H39 -4.1615 0.3711 -1.1811 H 1 LGD 0.4160
80 H40 4.6215 -3.6009 -0.6134 H 1 LGD 0.4640
81 H41 -3.0435 -3.7277 2.1180 H 1 LGD 0.4790
82 H42 -1.7294 -4.1413 1.2228 H 1 LGD 0.4790
83 H43 -1.9525 -4.0170 -1.8978 H 1 LGD 0.4848
84 H44 1.4450 3.6266 -2.8632 H 1 LGD 0.4727
85 H45 7.2080 0.7150 2.2589 H 1 LGD 0.4643
86 H46 -0.9408 0.3749 3.9785 H 1 LGD 0.4612
87 H47 -1.5689 -3.8619 2.8433 H 1 LGD 0.4790
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1