@COMMENT
LIGANDBOX_ID = D02543-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-04
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.0435 0.5862 -3.3932 C.3 1 LGD 0.1381
2 C2 -0.3782 1.9904 -3.4438 C.3 1 LGD 0.0943
3 C3 0.6836 2.1489 -2.3208 C.3 1 LGD 0.0530
4 C4 1.6740 0.9544 -2.3235 C.3 1 LGD 0.1015
5 C5 0.9493 -0.4196 -2.3766 C.3 1 LGD 0.2848
6 O1 0.0036 -0.4107 -3.4668 O.3 1 LGD -0.3756
7 O2 0.2510 -0.6751 -1.1354 O.3 1 LGD -0.5245
8 C6 -0.0885 -2.0665 -0.9239 C.3 1 LGD 0.1212
9 C7 0.5305 -2.5242 0.4209 C.3 1 LGD 0.1132
10 C8 -0.1618 -1.8425 1.6277 C.3 1 LGD -0.1161
11 C9 -1.6915 -2.0887 1.6362 C.3 1 LGD 0.0891
12 C10 -2.3687 -1.6864 0.2875 C.3 1 LGD 0.1367
13 C11 -1.6338 -2.2537 -0.9679 C.3 1 LGD 0.1310
14 O3 -2.4190 -0.2462 0.1903 O.3 1 LGD -0.4574
15 C12 -3.3423 0.3855 1.1117 C.3 1 LGD 0.2855
16 C13 -2.0085 0.3411 -4.5782 C.3 1 LGD 0.1522
17 O4 -2.6028 -0.9528 -4.4796 O.3 1 LGD -0.6275
18 O5 -1.3659 3.0172 -3.3300 O.3 1 LGD -0.5972
19 N1 0.0166 2.2275 -1.0090 N.4 1 LGD -0.8274
20 O6 2.5419 1.0126 -1.1894 O.3 1 LGD -0.5739
21 N2 1.9678 -2.2226 0.4248 N.am 1 LGD -0.6153
22 C14 2.8969 -2.9838 1.1184 C.2 1 LGD 0.6225
23 C15 4.3797 -2.5992 1.0154 C.3 1 LGD 0.0952
24 C16 4.6413 -1.1881 1.5965 C.3 1 LGD -0.0995
25 C17 6.1408 -0.8266 1.5718 C.3 1 LGD 0.1030
26 N3 6.3310 0.5170 2.1502 N.4 1 LGD -0.8208
27 O7 -2.6133 0.9130 2.2435 O.3 1 LGD -0.4530
28 C18 -1.6076 1.9011 1.9265 C.3 1 LGD 0.1297
29 C19 -2.3059 3.1298 1.2826 C.3 1 LGD 0.1121
30 C20 -3.1487 2.7122 0.0484 C.3 1 LGD 0.0991
31 C21 -4.0966 1.5429 0.4053 C.3 1 LGD 0.0938
32 C22 -0.8797 2.2757 3.2342 C.3 1 LGD 0.1041
33 N4 -0.2339 1.0760 3.8024 N.4 1 LGD -0.8211
34 O8 -1.3320 4.1005 0.8989 O.3 1 LGD -0.6553
35 O9 -3.9067 3.8269 -0.4178 O.3 1 LGD -0.5654
36 O10 -4.7478 1.0564 -0.7689 O.3 1 LGD -0.5344
37 O11 2.5280 -3.9374 1.7821 O.2 1 LGD -0.5277
38 O12 4.7887 -2.6512 -0.3543 O.3 1 LGD -0.5963
39 N5 -1.9481 -3.5173 1.9023 N.4 1 LGD -0.8187
40 O13 -1.9166 -3.6515 -1.0702 O.3 1 LGD -0.6283
41 H1 -1.6044 0.4817 -2.4558 H 1 LGD 0.0367
42 H2 0.1324 2.0860 -4.4110 H 1 LGD 0.1220
43 H3 1.2364 3.0772 -2.4783 H 1 LGD 0.1414
44 H4 2.2805 1.0362 -3.2348 H 1 LGD 0.1681
45 H5 1.6972 -1.2037 -2.5465 H 1 LGD 0.1336
46 H6 0.3501 -2.6826 -1.7208 H 1 LGD 0.1157
47 H7 0.3913 -3.6101 0.5016 H 1 LGD 0.1059
48 H8 0.2745 -2.2108 2.5651 H 1 LGD 0.0546
49 H9 0.0293 -0.7629 1.5966 H 1 LGD 0.0546
50 H10 -2.1376 -1.5138 2.4496 H 1 LGD 0.1003
51 H11 -3.3970 -2.0721 0.2772 H 1 LGD 0.1034
52 H12 -2.0271 -1.7469 -1.8578 H 1 LGD 0.1241
53 H13 -4.0787 -0.3466 1.4651 H 1 LGD 0.1306
54 H14 -2.7926 1.1086 -4.5781 H 1 LGD 0.0724
55 H15 -1.4523 0.4281 -5.5204 H 1 LGD 0.0724
56 H16 -3.0669 -1.1262 -5.3180 H 1 LGD 0.4614
57 H17 -1.0319 3.8040 -3.7971 H 1 LGD 0.4627
58 H18 -0.6807 2.9605 -1.0254 H 1 LGD 0.4609
59 H19 0.6985 2.4371 -0.2948 H 1 LGD 0.4609
60 H20 2.0803 0.5680 -0.4571 H 1 LGD 0.3827
61 H21 2.3055 -1.4625 -0.1461 H 1 LGD 0.3179
62 H22 4.9501 -3.3331 1.5999 H 1 LGD 0.1164
63 H23 4.0729 -0.4389 1.0302 H 1 LGD 0.0488
64 H24 4.2771 -1.1524 2.6314 H 1 LGD 0.0488
65 H25 6.7080 -1.5571 2.1531 H 1 LGD 0.1432
66 H26 6.5068 -0.8357 0.5424 H 1 LGD 0.1432
67 H27 5.9924 0.5306 3.1023 H 1 LGD 0.4654
68 H28 5.8218 1.1987 1.6050 H 1 LGD 0.4654
69 H29 -0.8763 1.4766 1.2301 H 1 LGD 0.0100
70 H30 -2.9820 3.5674 2.0294 H 1 LGD 0.1169
71 H31 -2.4783 2.3711 -0.7478 H 1 LGD 0.0034
72 H32 -4.8534 1.9204 1.1057 H 1 LGD 0.1499
73 H33 -0.1227 3.0364 3.0303 H 1 LGD 0.1493
74 H34 -1.5974 2.6777 3.9525 H 1 LGD 0.1493
75 H35 0.4444 0.7082 3.1512 H 1 LGD 0.4617
76 H36 0.2276 1.3129 4.6702 H 1 LGD 0.4617
77 H37 -1.8237 4.8696 0.5551 H 1 LGD 0.4929
78 H38 -4.5437 3.4874 -1.0725 H 1 LGD 0.4703
79 H39 -4.1185 0.4727 -1.2291 H 1 LGD 0.4145
80 H40 4.7081 -3.5742 -0.6560 H 1 LGD 0.4642
81 H41 -2.9384 -3.6714 2.0312 H 1 LGD 0.4806
82 H42 -1.6361 -4.0660 1.1112 H 1 LGD 0.4806
83 H43 -1.9165 -3.8847 -2.0168 H 1 LGD 0.4879
84 H44 -0.4300 1.3420 -0.8079 H 1 LGD 0.4609
85 H45 7.3132 0.7563 2.1451 H 1 LGD 0.4654
86 H46 -0.9400 0.3749 3.9805 H 1 LGD 0.4617
87 H47 -1.4533 -3.8101 2.7332 H 1 LGD 0.4806
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1